Merge pull request #15954 from github/release-prep/2.16.5

Release preparation for version 2.16.5

.bazelrc

@@ -1,4 +1,12 @@
 common --enable_platform_specific_config
+common --enable_bzlmod
+# because we use --override_module with `%workspace%`, the lock file is not stable
+common --lockfile_mode=off
+
+# when building from this repository in isolation, the internal repository will not be found at ..
+# where `MODULE.bazel` looks for it. The following will get us past the module loading phase, so
+# that we can build things that do not rely on that
+common --override_module=semmle_code=%workspace%/misc/bazel/semmle_code_stub
 
 build --repo_env=CC=clang --repo_env=CXX=clang++
 

.bazelversion

@@ -1 +1 @@
-6.3.1
+7.0.2

.clang-format

@@ -0,0 +1 @@
+DisableFormat: true

.gitattributes

@@ -71,3 +71,10 @@ go/extractor/opencsv/CSVReader.java -text
 # `javascript/ql/experimental/adaptivethreatmodeling/test/update_endpoint_test_files.py`.
 javascript/ql/experimental/adaptivethreatmodeling/test/endpoint_large_scale/autogenerated/**/*.js linguist-generated=true -merge
 javascript/ql/experimental/adaptivethreatmodeling/test/endpoint_large_scale/autogenerated/**/*.ts linguist-generated=true -merge
+
+# Auto-generated modeling for Python
+python/ql/lib/semmle/python/frameworks/data/internal/subclass-capture/*.yml linguist-generated=true
+
+# auto-generated bazel lock file
+ruby/extractor/cargo-bazel-lock.json linguist-generated=true
+ruby/extractor/cargo-bazel-lock.json -merge

.github/labeler.yml

@@ -20,7 +20,7 @@ JS:
 
 Kotlin:
   - java/kotlin-extractor/**/*
-  - java/ql/test/kotlin/**/*
+  - java/ql/test-kotlin*/**/*
 
 Python:
   - python/**/*

.github/workflows/check-change-note.yml

@@ -1,5 +1,8 @@
 name: Check change note
 
+permissions:
+  pull-requests: read
+
 on:
   pull_request_target:
     types: [labeled, unlabeled, opened, synchronize, reopened, ready_for_review]

.github/workflows/check-implicit-this.yml

@@ -9,6 +9,9 @@ on:
       - main
       - "rc/*"
 
+permissions:
+  contents: read
+
 jobs:
   check:
     runs-on: ubuntu-latest

.github/workflows/check-qldoc.yml

@@ -10,6 +10,9 @@ on:
       - main
       - "rc/*"
 
+permissions:
+  contents: read
+
 jobs:
   qldoc:
     runs-on: ubuntu-latest

.github/workflows/check-query-ids.yml

@@ -11,6 +11,9 @@ on:
       - "rc/*"
   workflow_dispatch:
 
+permissions:
+  contents: read
+
 jobs:
   check:
     name: Check query IDs

.github/workflows/close-stale.yml

@@ -5,6 +5,9 @@ on:
   schedule:
     - cron: "30 1 * * *"
 
+permissions:
+  issues: write
+
 jobs:
   stale:
     if: github.repository == 'github/codeql'
@@ -12,7 +15,7 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/stale@v8
+    - uses: actions/stale@v9
       with:
         repo-token: ${{ secrets.GITHUB_TOKEN }}
         stale-issue-message: 'This issue is stale because it has been open 14 days with no activity. Comment or remove the `Stale` label in order to avoid having this issue closed in 7 days.'

.github/workflows/codeql-analysis.yml

@@ -28,9 +28,9 @@ jobs:
 
     steps:
     - name: Setup dotnet
-      uses: actions/setup-dotnet@v3
+      uses: actions/setup-dotnet@v4
       with:
-        dotnet-version: 7.0.102
+        dotnet-version: 8.0.101
 
     - name: Checkout repository
       uses: actions/checkout@v4

.github/workflows/compile-queries.yml

@@ -8,8 +8,12 @@ on:
       - "codeql-cli-*"
   pull_request:
 
+permissions:
+  contents: read
+
 jobs:
   compile-queries:
+    if: github.repository_owner == 'github'
     runs-on: ubuntu-latest-xl
 
     steps:
@@ -24,7 +28,7 @@ jobs:
         with: 
           key: all-queries
       - name: check formatting
-        run: find */ql -type f \( -name "*.qll" -o -name "*.ql" \) -print0 | xargs -0 -n 3000 -P 10 codeql query format -q --check-only
+        run: find shared */ql -type f \( -name "*.qll" -o -name "*.ql" \) -print0 | xargs -0 -n 3000 -P 10 codeql query format -q --check-only
       - name: compile queries - check-only
         # run with --check-only if running in a PR (github.sha != main)
         if : ${{ github.event_name == 'pull_request' }}

.github/workflows/csharp-qltest.yml

@@ -25,6 +25,9 @@ defaults:
   run:
     working-directory: csharp
 
+permissions:
+  contents: read
+
 jobs:
   qlupgrade:
     runs-on: ubuntu-latest
@@ -46,6 +49,7 @@ jobs:
            xargs codeql execute upgrades testdb
           diff -q testdb/semmlecode.csharp.dbscheme downgrades/initial/semmlecode.csharp.dbscheme
   qltest:
+    if: github.repository_owner == 'github'
     runs-on: ubuntu-latest-xl
     strategy:
       fail-fast: false
@@ -72,15 +76,15 @@ jobs:
     steps:
       - uses: actions/checkout@v4
       - name: Setup dotnet
-        uses: actions/setup-dotnet@v3
+        uses: actions/setup-dotnet@v4
         with:
-          dotnet-version: 7.0.102
+          dotnet-version: 8.0.101
       - name: Extractor unit tests
         run: |
-          dotnet test -p:RuntimeFrameworkVersion=7.0.2 extractor/Semmle.Util.Tests
-          dotnet test -p:RuntimeFrameworkVersion=7.0.2 extractor/Semmle.Extraction.Tests
-          dotnet test -p:RuntimeFrameworkVersion=7.0.2 autobuilder/Semmle.Autobuild.CSharp.Tests
-          dotnet test -p:RuntimeFrameworkVersion=7.0.2 "${{ github.workspace }}/cpp/autobuilder/Semmle.Autobuild.Cpp.Tests"
+          dotnet test -p:RuntimeFrameworkVersion=8.0.1 extractor/Semmle.Util.Tests
+          dotnet test -p:RuntimeFrameworkVersion=8.0.1 extractor/Semmle.Extraction.Tests
+          dotnet test -p:RuntimeFrameworkVersion=8.0.1 autobuilder/Semmle.Autobuild.CSharp.Tests
+          dotnet test -p:RuntimeFrameworkVersion=8.0.1 "${{ github.workspace }}/cpp/autobuilder/Semmle.Autobuild.Cpp.Tests"
         shell: bash
   stubgentest:
     runs-on: ubuntu-latest

.github/workflows/csv-coverage-metrics.yml

@@ -14,6 +14,10 @@ on:
       - ".github/workflows/csv-coverage-metrics.yml"
       - ".github/actions/fetch-codeql/action.yml"
 
+permissions:
+  contents: read
+  security-events: write
+
 jobs:
   publish-java:
     runs-on: ubuntu-latest

.github/workflows/csv-coverage-pr-artifacts.yml

@@ -19,6 +19,10 @@ on:
       - main
       - "rc/*"
 
+permissions:
+  contents: read
+  pull-requests: read
+
 jobs:
   generate:
     name: Generate framework coverage artifacts

.github/workflows/csv-coverage-pr-comment.yml

@@ -6,6 +6,10 @@ on:
     types:
       - completed
 
+permissions:
+  contents: read
+  pull-requests: write
+
 jobs:
   check:
     name: Check framework coverage differences and comment

.github/workflows/csv-coverage-timeseries.yml

@@ -3,6 +3,9 @@ name: Build framework coverage timeseries reports
 on:
   workflow_dispatch:
 
+permissions:
+  contents: read
+
 jobs:
   build:
     runs-on: ubuntu-latest

.github/workflows/csv-coverage-update.yml

@@ -5,6 +5,10 @@ on:
   schedule:
     - cron: "0 0 * * *"
 
+permissions:
+  contents: write
+  pull-requests: write
+
 jobs:
   update:
     name: Update framework coverage report

.github/workflows/csv-coverage.yml

@@ -7,6 +7,9 @@ on:
         description: "github/codeql repo SHA used for looking up the CSV models"
         required: false
 
+permissions:
+  contents: read
+
 jobs:
   build:
     runs-on: ubuntu-latest

.github/workflows/fast-forward.yml

@@ -7,13 +7,14 @@ name: Fast-forward tracking branch for selected CodeQL version
 on:
   workflow_dispatch:
 
+permissions:
+  contents: write
+
 jobs:
   fast-forward:
     name: Fast-forward tracking branch for selected CodeQL version
     runs-on: ubuntu-latest
     if: github.repository == 'github/codeql'
-    permissions:
-      contents: write
     env:
       BRANCH_NAME: 'lgtm.com'
     steps:

.github/workflows/go-tests-other-os.yml

@@ -8,16 +8,21 @@ on:
       - .github/actions/**
       - codeql-workspace.yml
 env:
-  GO_VERSION: '~1.21.0'
+  GO_VERSION: '~1.22.0'
+
+permissions:
+  contents: read
+
 jobs:
   test-mac:
     name: Test MacOS
     runs-on: macos-latest
     steps:
       - name: Set up Go ${{ env.GO_VERSION }}
-        uses: actions/setup-go@v4
+        uses: actions/setup-go@v5
         with:
           go-version: ${{ env.GO_VERSION }}
+          cache: false
         id: go
 
       - name: Check out code
@@ -46,13 +51,15 @@ jobs:
           make test cache="${{ steps.query-cache.outputs.cache-dir }}"
 
   test-win:
+    if: github.repository_owner == 'github'
     name: Test Windows
     runs-on: windows-latest-xl
     steps:
       - name: Set up Go ${{ env.GO_VERSION }}
-        uses: actions/setup-go@v4
+        uses: actions/setup-go@v5
         with:
           go-version: ${{ env.GO_VERSION }}
+          cache: false
         id: go
 
       - name: Check out code

.github/workflows/go-tests.yml

@@ -15,17 +15,24 @@ on:
       - .github/workflows/go-tests.yml
       - .github/actions/**
       - codeql-workspace.yml
+
 env:
-  GO_VERSION: '~1.21.0'
+  GO_VERSION: '~1.22.0'
+
+permissions:
+  contents: read
+
 jobs:
   test-linux:
+    if: github.repository_owner == 'github'
     name: Test Linux (Ubuntu)
     runs-on: ubuntu-latest-xl
     steps:
       - name: Set up Go ${{ env.GO_VERSION }}
-        uses: actions/setup-go@v4
+        uses: actions/setup-go@v5
         with:
           go-version: ${{ env.GO_VERSION }}
+          cache: false
         id: go
 
       - name: Check out code

.github/workflows/labeler.yml

@@ -2,11 +2,12 @@ name: "Pull Request Labeler"
 on:
 - pull_request_target
 
+permissions:
+  contents: read
+  pull-requests: write
+
 jobs:
   triage:
-    permissions:
-      contents: read
-      pull-requests: write
     runs-on: ubuntu-latest
     steps:
     - uses: actions/labeler@v4

.github/workflows/mad_modelDiff.yml

@@ -12,6 +12,7 @@ on:
       - main
     paths:
       - "java/ql/src/utils/modelgenerator/**/*.*"
+      - "misc/scripts/models-as-data/*.*"
       - ".github/workflows/mad_modelDiff.yml"
 
 permissions:
@@ -61,8 +62,9 @@ jobs:
             DATABASE=$2
             cd codeql-$QL_VARIANT
             SHORTNAME=`basename $DATABASE`
-            python java/ql/src/utils/modelgenerator/GenerateFlowModel.py --with-summaries --with-sinks $DATABASE ${SHORTNAME}.temp.model.yml
-            mv java/ql/lib/ext/generated/${SHORTNAME}.temp.model.yml $MODELS/${SHORTNAME}Generated_${QL_VARIANT}.model.yml
+            python java/ql/src/utils/modelgenerator/GenerateFlowModel.py --with-summaries --with-sinks $DATABASE $SHORTNAME/$QL_VARIANT
+            mkdir -p $MODELS/$SHORTNAME
+            mv java/ql/lib/ext/generated/$SHORTNAME/$QL_VARIANT $MODELS/$SHORTNAME
             cd ..
           }
 
@@ -85,16 +87,16 @@ jobs:
           set -x
           MODELS=`pwd`/tmp-models
           ls -1 tmp-models/
-          for m in $MODELS/*_main.model.yml ; do
+          for m in $MODELS/*/main/*.model.yml ; do
             t="${m/main/"pr"}"
             basename=`basename $m`
-            name="diff_${basename/_main.model.yml/""}"
+            name="diff_${basename/.model.yml/""}"
             (diff -w -u $m $t | diff2html -i stdin -F $MODELS/$name.html) || true
           done
       - uses: actions/upload-artifact@v3
         with:
           name: models
-          path: tmp-models/*.model.yml
+          path: tmp-models/**/**/*.model.yml
           retention-days: 20
       - uses: actions/upload-artifact@v3
         with:

.github/workflows/mad_regenerate-models.yml

@@ -11,6 +11,9 @@ on:
       - ".github/workflows/mad_regenerate-models.yml"
       - ".github/actions/fetch-codeql/action.yml"
 
+permissions:
+  contents: read
+
 jobs:
   regenerate-models:
     runs-on: ubuntu-latest

.github/workflows/qhelp-pr-preview.yml

@@ -77,7 +77,7 @@ jobs:
           done < "${RUNNER_TEMP}/paths.txt" >> comment_body.txt
           exit "${EXIT_CODE}"
 
-      - if: always()
+      - if: ${{ !cancelled() }}
         uses: actions/upload-artifact@v3
         with:
           name: comment

.github/workflows/ql-for-ql-build.yml

@@ -9,8 +9,13 @@ on:
 env:
   CARGO_TERM_COLOR: always
 
+permissions:
+  contents: read
+  security-events: write
+
 jobs:
   analyze:
+    if: github.repository_owner == 'github'
     runs-on: ubuntu-latest-xl
     steps:
       ### Build the queries ###
@@ -19,7 +24,7 @@ jobs:
           fetch-depth: 0
       - name: Find codeql
         id: find-codeql
-        uses: github/codeql-action/init@v2
+        uses: github/codeql-action/init@main
         with:
           languages: javascript # does not matter
       - uses: ./.github/actions/os-version
@@ -65,7 +70,7 @@ jobs:
             exclude:*/ql/lib/upgrades/
             exclude:java/ql/integration-tests
       - name: Upload sarif to code-scanning
-        uses: github/codeql-action/upload-sarif@v2
+        uses: github/codeql-action/upload-sarif@main
         with:
           sarif_file: ql-for-ql.sarif
           category: ql-for-ql

.github/workflows/ql-for-ql-dataset_measure.yml

@@ -11,6 +11,10 @@ on:
       - ql/ql/src/ql.dbscheme
   workflow_dispatch:
 
+permissions:
+  contents: read
+  security-events: read
+
 jobs:
   measure:
     env:
@@ -25,7 +29,7 @@ jobs:
 
       - name: Find codeql
         id: find-codeql
-        uses: github/codeql-action/init@v2
+        uses: github/codeql-action/init@main
         with:
           languages: javascript # does not matter
       - uses: ./.github/actions/os-version

.github/workflows/ql-for-ql-tests.yml

@@ -17,6 +17,9 @@ on:
 env:
   CARGO_TERM_COLOR: always
 
+permissions:
+  contents: read
+
 jobs:
   qltest:
     runs-on: ubuntu-latest
@@ -24,7 +27,7 @@ jobs:
       - uses: actions/checkout@v4
       - name: Find codeql
         id: find-codeql
-        uses: github/codeql-action/init@v2
+        uses: github/codeql-action/init@main
         with:
           languages: javascript # does not matter
       - uses: ./.github/actions/os-version
@@ -69,7 +72,7 @@ jobs:
           echo "/usr/local/opt/gnu-tar/libexec/gnubin" >> $GITHUB_PATH
       - name: Find codeql
         id: find-codeql
-        uses: github/codeql-action/init@v2
+        uses: github/codeql-action/init@main
         with:
           languages: javascript # does not matter
       - uses: ./.github/actions/os-version

.github/workflows/query-list.yml

@@ -13,6 +13,9 @@ on:
       - '.github/actions/fetch-codeql/action.yml'
       - 'misc/scripts/generate-code-scanning-query-list.py'
 
+permissions:
+  contents: read
+
 jobs:
   build:
 

.github/workflows/ruby-build.yml

@@ -32,6 +32,9 @@ defaults:
   run:
     working-directory: ruby
 
+permissions:
+  contents: read
+
 jobs:
   build:
     strategy:
@@ -48,9 +51,11 @@ jobs:
         run: |
           brew install gnu-tar
           echo "/usr/local/opt/gnu-tar/libexec/gnubin" >> $GITHUB_PATH
-      - name: Install cargo-cross
-        if: runner.os == 'Linux'
-        run: cargo install cross --version 0.2.5
+      - name: Prepare Windows
+        if: runner.os == 'Windows'
+        shell: powershell
+        run: |
+          git config --global core.longpaths true
       - uses: ./.github/actions/os-version
         id: os_version
       - name: Cache entire extractor
@@ -79,16 +84,8 @@ jobs:
       - name: Run tests
         if: steps.cache-extractor.outputs.cache-hit != 'true'
         run: cd extractor && cargo test --verbose
-      # On linux, build the extractor via cross in a centos7 container.
-      # This ensures we don't depend on glibc > 2.17.
-      - name: Release build (linux)
-        if: steps.cache-extractor.outputs.cache-hit != 'true' && runner.os == 'Linux'
-        run: |
-          cd extractor
-          cross build --release
-          mv target/x86_64-unknown-linux-gnu/release/codeql-extractor-ruby target/release/
-      - name: Release build (windows and macos)
-        if: steps.cache-extractor.outputs.cache-hit != 'true' && runner.os != 'Linux'
+      - name: Release build
+        if: steps.cache-extractor.outputs.cache-hit != 'true'
         run: cd extractor && cargo build --release
       - name: Generate dbscheme
         if: ${{ matrix.os == 'ubuntu-latest' && steps.cache-extractor.outputs.cache-hit != 'true'}}
@@ -111,6 +108,7 @@ jobs:
             ruby/extractor/target/release/codeql-extractor-ruby.exe
           retention-days: 1
   compile-queries:
+    if: github.repository_owner == 'github'
     runs-on: ubuntu-latest-xl
     steps:
       - uses: actions/checkout@v4
@@ -119,7 +117,7 @@ jobs:
       - name: Cache compilation cache
         id: query-cache
         uses: ./.github/actions/cache-query-compilation
-        with: 
+        with:
           key: ruby-build
       - name: Build Query Pack
         run: |
@@ -231,54 +229,3 @@ jobs:
         shell: bash
         run: |
           codeql database analyze --search-path "${{ runner.temp }}/ruby-bundle" --format=sarifv2.1.0 --output=out.sarif ../database ruby-code-scanning.qls
-
-  # This is a copy of the 'test' job that runs in a centos7 container.
-  # This tests that the extractor works correctly on systems with an old glibc.
-  test-centos7:
-    defaults:
-      run:
-        working-directory: ${{ github.workspace }}
-    strategy:
-      fail-fast: false
-    runs-on: ubuntu-latest
-    container:
-      image: centos:centos7
-      env:
-        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-    needs: [package]
-    steps:
-      - name: Install gh cli
-        run: |
-          yum-config-manager --add-repo https://cli.github.com/packages/rpm/gh-cli.repo
-          # fetch-codeql requires unzip and jq
-          # jq is available in epel-release (https://docs.fedoraproject.org/en-US/epel/)
-          yum install -y gh unzip epel-release
-          yum install -y jq
-      - uses: actions/checkout@v3
-      - name: Fetch CodeQL
-        uses: ./.github/actions/fetch-codeql
-
-      # Due to a bug in Actions, we can't use runner.temp in the run blocks here.
-      # https://github.com/actions/runner/issues/2185
-
-      - name: Download Ruby bundle
-        uses: actions/download-artifact@v3
-        with:
-          name: codeql-ruby-bundle
-          path: ${{ runner.temp }}
-      - name: Unzip Ruby bundle
-        shell: bash
-        run: unzip -q -d "$RUNNER_TEMP"/ruby-bundle "$RUNNER_TEMP"/codeql-ruby-bundle.zip
-
-      - name: Run QL test
-        shell: bash
-        run: |
-          codeql test run --search-path "$RUNNER_TEMP"/ruby-bundle --additional-packs "$RUNNER_TEMP"/ruby-bundle ruby/ql/test/library-tests/ast/constants/
-      - name: Create database
-        shell: bash
-        run: |
-          codeql database create --search-path "$RUNNER_TEMP"/ruby-bundle --language ruby --source-root ruby/ql/test/library-tests/ast/constants/ ../database
-      - name: Analyze database
-        shell: bash
-        run: |
-          codeql database analyze --search-path "$RUNNER_TEMP"/ruby-bundle --format=sarifv2.1.0 --output=out.sarif ../database ruby-code-scanning.qls

.github/workflows/ruby-dataset-measure.yml

@@ -17,6 +17,9 @@ on:
       - .github/workflows/ruby-dataset-measure.yml
   workflow_dispatch:
 
+permissions:
+  contents: read
+
 jobs:
   measure:
     env:

.github/workflows/ruby-qltest.yml

@@ -29,6 +29,9 @@ defaults:
   run:
     working-directory: ruby
 
+permissions:
+  contents: read
+
 jobs:
   qlupgrade:
     runs-on: ubuntu-latest
@@ -50,6 +53,7 @@ jobs:
            xargs codeql execute upgrades testdb
           diff -q testdb/ruby.dbscheme downgrades/initial/ruby.dbscheme
   qltest:
+    if: github.repository_owner == 'github'
     runs-on: ubuntu-latest-xl
     strategy:
       fail-fast: false

.github/workflows/swift.yml

@@ -33,46 +33,62 @@ on:
       - rc/*
       - codeql-cli-*
 
+permissions:
+  contents: read
+
 jobs:
   # not using a matrix as you cannot depend on a specific job in a matrix, and we want to start linux checks
   # without waiting for the macOS build
   build-and-test-macos:
+    if: github.repository_owner == 'github'
     runs-on: macos-12-xl
     steps:
       - uses: actions/checkout@v4
       - uses: ./swift/actions/build-and-test
   build-and-test-linux:
+    if: github.repository_owner == 'github'
     runs-on: ubuntu-latest-xl
     steps:
       - uses: actions/checkout@v4
       - uses: ./swift/actions/build-and-test
   qltests-linux:
+    if: github.repository_owner == 'github'
     needs: build-and-test-linux
     runs-on: ubuntu-latest-xl
     steps:
       - uses: actions/checkout@v4
       - uses: ./swift/actions/run-ql-tests
   qltests-macos:
-    if : ${{ github.event_name == 'pull_request' }}
+    if: ${{ github.repository_owner == 'github' && github.event_name == 'pull_request' }}
     needs: build-and-test-macos
     runs-on: macos-12-xl
     steps:
       - uses: actions/checkout@v4
       - uses: ./swift/actions/run-ql-tests
   integration-tests-linux:
+    if: github.repository_owner == 'github'
     needs: build-and-test-linux
     runs-on: ubuntu-latest-xl
     steps:
       - uses: actions/checkout@v4
       - uses: ./swift/actions/run-integration-tests
   integration-tests-macos:
-    if : ${{ github.event_name == 'pull_request' }}
+    if: ${{ github.repository_owner == 'github' && github.event_name == 'pull_request' }}
     needs: build-and-test-macos
     runs-on: macos-12-xl
     timeout-minutes: 60
     steps:
       - uses: actions/checkout@v4
       - uses: ./swift/actions/run-integration-tests
+  clang-format:
+    if : ${{ github.event_name == 'pull_request' }}
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: pre-commit/action@646c83fcd040023954eafda54b4db0192ce70507
+        name: Check that python code is properly formatted
+        with:
+          extra_args: clang-format --all-files
   codegen:
     if : ${{ github.event_name == 'pull_request' }}
     runs-on: ubuntu-latest
@@ -82,12 +98,12 @@ jobs:
       - uses: actions/setup-python@v4
         with:
           python-version-file: 'swift/.python-version'
-      - uses: pre-commit/action@v3.0.0
+      - uses: pre-commit/action@646c83fcd040023954eafda54b4db0192ce70507
         name: Check that python code is properly formatted
         with:
           extra_args: autopep8 --all-files
       - uses: ./.github/actions/fetch-codeql
-      - uses: pre-commit/action@v3.0.0
+      - uses: pre-commit/action@646c83fcd040023954eafda54b4db0192ce70507
         name: Check that QL generated code was checked in
         with:
           extra_args: swift-codegen --all-files

.github/workflows/sync-files.yml

@@ -10,6 +10,9 @@ on:
       - main
       - 'rc/*'
 
+permissions:
+  contents: read
+
 jobs:
   sync:
     runs-on: ubuntu-latest

.github/workflows/tree-sitter-extractor-test.yml

@@ -23,6 +23,9 @@ defaults:
   run:
     working-directory: shared/tree-sitter-extractor
 
+permissions:
+  contents: read
+
 jobs:
   test:
     runs-on: ubuntu-latest

.github/workflows/validate-change-notes.yml

@@ -15,6 +15,9 @@ on:
       - ".github/workflows/validate-change-notes.yml"
       - ".github/actions/fetch-codeql/action.yml"
 
+permissions:
+  contents: read
+
 jobs:
   check-change-note:
     runs-on: ubuntu-latest

.gitignore

@@ -39,6 +39,9 @@
 # local bazel options
 /local.bazelrc
 
+# generated cmake directory
+/.bazel-cmake
+
 # CLion project files
 /.clwb
 

.pre-commit-config.yaml

@@ -10,10 +10,9 @@ repos:
         exclude: /test/.*$(?<!\.ql)(?<!\.qll)(?<!\.qlref)|.*\.patch
 
   - repo: https://github.com/pre-commit/mirrors-clang-format
-    rev: v13.0.1
+    rev: v17.0.6
     hooks:
       - id: clang-format
-        files: ^swift/.*\.(h|c|cpp)$
 
   - repo: https://github.com/pre-commit/mirrors-autopep8
     rev: v1.6.0

CODEOWNERS

@@ -8,6 +8,8 @@
 /swift/ @github/codeql-swift
 /misc/codegen/ @github/codeql-swift
 /java/kotlin-extractor/ @github/codeql-kotlin
+/java/ql/test-kotlin1/ @github/codeql-kotlin
+/java/ql/test-kotlin2/ @github/codeql-kotlin
 
 # ML-powered queries
 /javascript/ql/experimental/adaptivethreatmodeling/ @github/codeql-ml-powered-queries-reviewers
@@ -23,6 +25,7 @@
 
 # Bazel (excluding BUILD.bazel files)
 WORKSPACE.bazel @github/codeql-ci-reviewers
+MODULE.bazel @github/codeql-ci-reviewers
 .bazelversion @github/codeql-ci-reviewers
 .bazelrc @github/codeql-ci-reviewers
 **/*.bzl @github/codeql-ci-reviewers
@@ -42,3 +45,4 @@ WORKSPACE.bazel @github/codeql-ci-reviewers
 
 # Misc
 /misc/scripts/accept-expected-changes-from-ci.py @RasmusWL
+/misc/scripts/generate-code-scanning-query-list.py @RasmusWL

MODULE.bazel

@@ -0,0 +1,53 @@
+module(
+    name = "codeql",
+    version = "0.0",
+)
+
+# this points to our internal repository when `codeql` is checked out as a submodule thereof
+# when building things from `codeql` independently this is stubbed out in `.bazelrc`
+bazel_dep(name = "semmle_code", version = "0.0")
+local_path_override(
+    module_name = "semmle_code",
+    path = "..",
+)
+
+# see https://registry.bazel.build/ for a list of available packages
+
+bazel_dep(name = "platforms", version = "0.0.8")
+bazel_dep(name = "rules_pkg", version = "0.9.1")
+bazel_dep(name = "rules_nodejs", version = "6.0.3")
+bazel_dep(name = "rules_python", version = "0.31.0")
+bazel_dep(name = "bazel_skylib", version = "1.5.0")
+bazel_dep(name = "abseil-cpp", version = "20240116.0", repo_name = "absl")
+bazel_dep(name = "nlohmann_json", version = "3.11.3", repo_name = "json")
+bazel_dep(name = "fmt", version = "10.0.0")
+
+pip = use_extension("@rules_python//python/extensions:pip.bzl", "pip")
+pip.parse(
+    hub_name = "codegen_deps",
+    python_version = "3.11",
+    requirements_lock = "//misc/codegen:requirements_lock.txt",
+)
+use_repo(pip, "codegen_deps")
+
+swift_deps = use_extension("//swift/third_party:load.bzl", "swift_deps")
+use_repo(
+    swift_deps,
+    "binlog",
+    "picosha2",
+    "swift_prebuilt_darwin_x86_64",
+    "swift_prebuilt_linux",
+    "swift_toolchain_linux",
+    "swift_toolchain_macos",
+)
+
+node = use_extension("@rules_nodejs//nodejs:extensions.bzl", "node")
+node.toolchain(
+    name = "nodejs",
+    node_version = "18.15.0",
+)
+use_repo(node, "nodejs", "nodejs_toolchains")
+
+register_toolchains(
+    "@nodejs_toolchains//:all",
+)

WORKSPACE.bazel

@@ -1,12 +1,2 @@
-# Please notice that any bazel targets and definitions in this repository are currently experimental
-# and for internal use only.
-
-workspace(name = "codeql")
-
-load("//misc/bazel:workspace.bzl", "codeql_workspace")
-
-codeql_workspace()
-
-load("//misc/bazel:workspace_deps.bzl", "codeql_workspace_deps")
-
-codeql_workspace_deps()
+# please use MODULE.bazel to add dependencies
+# this empty file is required by internal repositories, don't remove it

codeql-workspace.yml

@@ -1,7 +1,7 @@
 provide:
   - "*/ql/src/qlpack.yml"
   - "*/ql/lib/qlpack.yml"
-  - "*/ql/test/qlpack.yml"
+  - "*/ql/test*/qlpack.yml"
   - "*/ql/examples/qlpack.yml"
   - "*/ql/consistency-queries/qlpack.yml"
   - "*/ql/automodel/src/qlpack.yml"
@@ -29,6 +29,7 @@ provide:
   - "swift/extractor-pack/codeql-extractor.yml"
   - "swift/integration-tests/qlpack.yml"
   - "ql/extractor-pack/codeql-extractor.yml"
+  - ".github/codeql/extensions/**/codeql-pack.yml"
 
 versionPolicies:
   default:

config/identical-files.json

@@ -53,14 +53,6 @@
     "ruby/ql/lib/codeql/ruby/dataflow/internal/tainttracking1/TaintTrackingImpl.qll",
     "swift/ql/lib/codeql/swift/dataflow/internal/tainttracking1/TaintTrackingImpl.qll"
   ],
-  "DataFlow Java/C#/Go/Ruby/Python/Swift Flow Summaries": [
-    "java/ql/lib/semmle/code/java/dataflow/internal/FlowSummaryImpl.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/FlowSummaryImpl.qll",
-    "go/ql/lib/semmle/go/dataflow/internal/FlowSummaryImpl.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/FlowSummaryImpl.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/FlowSummaryImpl.qll",
-    "swift/ql/lib/codeql/swift/dataflow/internal/FlowSummaryImpl.qll"
-  ],
   "SsaReadPosition Java/C#": [
     "java/ql/lib/semmle/code/java/dataflow/internal/rangeanalysis/SsaReadPositionCommon.qll",
     "csharp/ql/lib/semmle/code/csharp/dataflow/internal/rangeanalysis/SsaReadPositionCommon.qll"
@@ -439,13 +431,6 @@
     "java/ql/src/experimental/Security/CWE/CWE-400/LocalThreadResourceAbuse.qhelp",
     "java/ql/src/experimental/Security/CWE/CWE-400/ThreadResourceAbuse.qhelp"
   ],
-  "IDE Contextual Queries": [
-    "cpp/ql/lib/IDEContextual.qll",
-    "csharp/ql/lib/IDEContextual.qll",
-    "java/ql/lib/IDEContextual.qll",
-    "javascript/ql/lib/IDEContextual.qll",
-    "python/ql/lib/analysis/IDEContextual.qll"
-  ],
   "CryptoAlgorithms Python/JS/Ruby": [
     "javascript/ql/lib/semmle/javascript/security/CryptoAlgorithms.qll",
     "python/ql/lib/semmle/python/concepts/CryptoAlgorithms.qll",
@@ -462,23 +447,6 @@
     "ruby/ql/lib/codeql/ruby/security/internal/SensitiveDataHeuristics.qll",
     "swift/ql/lib/codeql/swift/security/internal/SensitiveDataHeuristics.qll"
   ],
-  "TypeTracker": [
-    "python/ql/lib/semmle/python/dataflow/new/internal/TypeTracker.qll",
-    "ruby/ql/lib/codeql/ruby/typetracking/TypeTracker.qll"
-  ],
-  "SummaryTypeTracker": [
-    "python/ql/lib/semmle/python/dataflow/new/internal/SummaryTypeTracker.qll",
-    "ruby/ql/lib/codeql/ruby/typetracking/internal/SummaryTypeTracker.qll"
-  ],
-  "AccessPathSyntax": [
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/AccessPathSyntax.qll",
-    "go/ql/lib/semmle/go/dataflow/internal/AccessPathSyntax.qll",
-    "java/ql/lib/semmle/code/java/dataflow/internal/AccessPathSyntax.qll",
-    "javascript/ql/lib/semmle/javascript/frameworks/data/internal/AccessPathSyntax.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/AccessPathSyntax.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/AccessPathSyntax.qll",
-    "swift/ql/lib/codeql/swift/dataflow/internal/AccessPathSyntax.qll"
-  ],
   "IncompleteUrlSubstringSanitization": [
     "javascript/ql/src/Security/CWE-020/IncompleteUrlSubstringSanitization.qll",
     "ruby/ql/src/queries/security/cwe-020/IncompleteUrlSubstringSanitization.qll"
@@ -498,10 +466,6 @@
     "ruby/ql/lib/codeql/ruby/frameworks/data/internal/ApiGraphModelsExtensions.qll",
     "python/ql/lib/semmle/python/frameworks/data/internal/ApiGraphModelsExtensions.qll"
   ],
-  "Typo database": [
-    "javascript/ql/src/Expressions/TypoDatabase.qll",
-    "ql/ql/src/codeql_ql/style/TypoDatabase.qll"
-  ],
   "Swift declarations test file": [
     "swift/ql/test/extractor-tests/declarations/declarations.swift",
     "swift/ql/test/library-tests/ast/declarations.swift"
@@ -534,4 +498,4 @@
     "python/ql/test/experimental/dataflow/model-summaries/InlineTaintTest.ext.yml",
     "python/ql/test/experimental/dataflow/model-summaries/NormalDataflowTest.ext.yml"
   ]
-}
+}

cpp/autobuilder/Semmle.Autobuild.Cpp.Tests/BuildScripts.cs

@@ -145,9 +145,9 @@ namespace Semmle.Autobuild.Cpp.Tests
 
         bool IBuildActions.IsMacOs() => IsMacOs;
 
-        public bool IsArm { get; set; }
+        public bool IsRunningOnAppleSilicon { get; set; }
 
-        bool IBuildActions.IsArm() => IsArm;
+        bool IBuildActions.IsRunningOnAppleSilicon() => IsRunningOnAppleSilicon;
 
         string IBuildActions.PathCombine(params string[] parts)
         {
@@ -326,7 +326,7 @@ namespace Semmle.Autobuild.Cpp.Tests
         public void TestCppAutobuilderSuccess()
         {
             Actions.RunProcess[@"cmd.exe /C nuget restore C:\Project\test.sln -DisableParallelProcessing"] = 1;
-            Actions.RunProcess[@"cmd.exe /C C:\Project\.nuget\nuget.exe restore C:\Project\test.sln -DisableParallelProcessing"] = 0;
+            Actions.RunProcess[@"cmd.exe /C scratch\.nuget\nuget.exe restore C:\Project\test.sln -DisableParallelProcessing"] = 0;
             Actions.RunProcess[@"cmd.exe /C CALL ^""C:\Program^ Files^ ^(x86^)\Microsoft^ Visual^ Studio^ 14.0\VC\vcvarsall.bat^"" && set Platform=&& type NUL && msbuild C:\Project\test.sln /t:rebuild /p:Platform=""x86"" /p:Configuration=""Release"""] = 0;
             Actions.RunProcessOut[@"C:\Program Files (x86)\Microsoft Visual Studio\Installer\vswhere.exe -prerelease -legacy -property installationPath"] = "";
             Actions.RunProcess[@"C:\Program Files (x86)\Microsoft Visual Studio\Installer\vswhere.exe -prerelease -legacy -property installationPath"] = 1;
@@ -337,10 +337,11 @@ namespace Semmle.Autobuild.Cpp.Tests
             Actions.FileExists[@"C:\Program Files (x86)\Microsoft Visual Studio 11.0\VC\vcvarsall.bat"] = true;
             Actions.FileExists[@"C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\vcvarsall.bat"] = true;
             Actions.FileExists[@"C:\Program Files (x86)\Microsoft Visual Studio\Installer\vswhere.exe"] = true;
+            Actions.GetEnvironmentVariable["CODEQL_EXTRACTOR_CPP_SCRATCH_DIR"] = "scratch";
             Actions.EnumerateFiles[@"C:\Project"] = "foo.cs\ntest.slx";
             Actions.EnumerateDirectories[@"C:\Project"] = "";
-            Actions.CreateDirectories.Add(@"C:\Project\.nuget");
-            Actions.DownloadFiles.Add(("https://dist.nuget.org/win-x86-commandline/latest/nuget.exe", @"C:\Project\.nuget\nuget.exe"));
+            Actions.CreateDirectories.Add(@"scratch\.nuget");
+            Actions.DownloadFiles.Add(("https://dist.nuget.org/win-x86-commandline/latest/nuget.exe", @"scratch\.nuget\nuget.exe"));
 
             var autobuilder = CreateAutoBuilder(true);
             var solution = new TestSolution(@"C:\Project\test.sln");

cpp/autobuilder/Semmle.Autobuild.Cpp.Tests/Semmle.Autobuild.Cpp.Tests.csproj

@@ -2,7 +2,7 @@
 
   <PropertyGroup>
     <OutputType>Exe</OutputType>
-    <TargetFramework>net7.0</TargetFramework>
+    <TargetFramework>net8.0</TargetFramework>
     <GenerateAssemblyInfo>false</GenerateAssemblyInfo>
     <RuntimeIdentifiers>win-x64;linux-x64;osx-x64</RuntimeIdentifiers>
     <Nullable>enable</Nullable>
@@ -11,12 +11,12 @@
   <ItemGroup>
     <PackageReference Include="System.IO.FileSystem" Version="4.3.0" />
     <PackageReference Include="System.IO.FileSystem.Primitives" Version="4.3.0" />
-    <PackageReference Include="xunit" Version="2.4.2" />
-    <PackageReference Include="xunit.runner.visualstudio" Version="2.4.5">
+    <PackageReference Include="xunit" Version="2.6.2" />
+    <PackageReference Include="xunit.runner.visualstudio" Version="2.5.4">
       <PrivateAssets>all</PrivateAssets>
       <IncludeAssets>runtime; build; native; contentfiles; analyzers</IncludeAssets>
     </PackageReference>
-    <PackageReference Include="Microsoft.NET.Test.Sdk" Version="17.4.0" />
+    <PackageReference Include="Microsoft.NET.Test.Sdk" Version="17.8.0" />
   </ItemGroup>
 
   <ItemGroup>

cpp/autobuilder/Semmle.Autobuild.Cpp/Program.cs

@@ -1,5 +1,7 @@
 using System;
+
 using Semmle.Autobuild.Shared;
+using Semmle.Util;
 
 namespace Semmle.Autobuild.Cpp
 {

cpp/autobuilder/Semmle.Autobuild.Cpp/Semmle.Autobuild.Cpp.csproj

@@ -1,7 +1,7 @@
 <Project Sdk="Microsoft.NET.Sdk">
 
   <PropertyGroup>
-    <TargetFramework>net7.0</TargetFramework>
+    <TargetFramework>net8.0</TargetFramework>
     <AssemblyName>Semmle.Autobuild.Cpp</AssemblyName>
     <RootNamespace>Semmle.Autobuild.Cpp</RootNamespace>
     <ApplicationIcon />
@@ -17,7 +17,7 @@
   </ItemGroup>
 
   <ItemGroup>
-    <PackageReference Include="Microsoft.Build" Version="17.3.2" />
+    <PackageReference Include="Microsoft.Build" Version="17.8.3" />
   </ItemGroup>
 
   <ItemGroup>

cpp/downgrades/0a9eb01d3650642e013eb86be45d952289537f91/upgrade.properties

@@ -0,0 +1,3 @@
+description: Expose whether a function was prototyped or not
+compatibility: backwards
+function_prototyped.rel: delete

cpp/downgrades/298438feb146335af824002589cd6d4e96e5dbf9/exprparents.ql

@@ -0,0 +1,19 @@
+class Element extends @element {
+  string toString() { none() }
+}
+
+class Expr extends @expr {
+  string toString() { none() }
+}
+
+class Stmt extends @stmt {
+  string toString() { none() }
+}
+
+predicate isStmtWithInitializer(Stmt stmt) { exists(int kind | stmts(stmt, kind, _) | kind = 29) }
+
+from Expr child, int index, int index_new, Element parent
+where
+  exprparents(child, index, parent) and
+  if isStmtWithInitializer(parent) then index_new = index - 1 else index_new = index
+select child, index_new, parent

cpp/downgrades/298438feb146335af824002589cd6d4e96e5dbf9/for_initialization.ql

@@ -0,0 +1,9 @@
+class Stmt extends @stmt {
+  string toString() { none() }
+}
+
+from Stmt f, Stmt i
+where
+  for_initialization(f, i) and
+  f instanceof @stmt_for
+select f, i

cpp/downgrades/298438feb146335af824002589cd6d4e96e5dbf9/stmtparents.ql

@@ -0,0 +1,20 @@
+class Element extends @element {
+  string toString() { none() }
+}
+
+class Stmt extends @stmt {
+  string toString() { none() }
+}
+
+predicate isStmtWithInitializer(Stmt stmt) { exists(int kind | stmts(stmt, kind, _) | kind = 29) }
+
+from Stmt child, int index, int index_new, Element parent
+where
+  stmtparents(child, index, parent) and
+  (
+    not isStmtWithInitializer(parent)
+    or
+    index > 0
+  ) and
+  if isStmtWithInitializer(parent) then index_new = index - 1 else index_new = index
+select child, index_new, parent

cpp/downgrades/298438feb146335af824002589cd6d4e96e5dbf9/upgrade.properties

@@ -0,0 +1,5 @@
+description: Support C++20 range-based for initializers
+compatibility: partial
+exprparents.rel: run exprparents.qlo
+stmtparents.rel: run stmtparents.qlo
+for_initialization.rel: run for_initialization.qlo

cpp/downgrades/4f9fabab5124d49108782c081579f45a70571d74/mangled_name.ql

@@ -0,0 +1,11 @@
+class Declaration extends @declaration {
+  string toString() { none() }
+}
+
+class MangledName extends @mangledname {
+  string toString() { none() }
+}
+
+from Declaration d, MangledName n
+where mangled_name(d, n, _)
+select d, n

cpp/downgrades/4f9fabab5124d49108782c081579f45a70571d74/upgrade.properties

@@ -0,0 +1,3 @@
+description: Add completness information to mangled name table
+compatibility: full
+mangled_name.rel: run mangled_name.qlo

cpp/downgrades/7f34caf73ca98314885030cc5a22b6e328fe687c/functions.ql

@@ -0,0 +1,9 @@
+class Function extends @function {
+  string toString() { none() }
+}
+
+from Function fun, string name, int kind, int kind_new
+where
+  functions(fun, name, kind) and
+  if kind = 7 or kind = 8 then kind_new = 0 else kind_new = kind
+select fun, name, kind_new

cpp/downgrades/7f34caf73ca98314885030cc5a22b6e328fe687c/upgrade.properties

@@ -0,0 +1,3 @@
+description: Support more function types
+compatibility: full
+functions.rel: run functions.qlo

cpp/downgrades/8cba93a44180e0d50a80a660950800d822b981fc/upgrade.properties

@@ -0,0 +1,2 @@
+description: Removed @assignpaddexpr and @assignpsubexpr from @assign_bitwise_expr
+compatibility: full

cpp/downgrades/cf72c8898d19eb1b3374432cf79d8276cb07ad43/upgrade.properties

@@ -1,5 +1,6 @@
 description: Support C++17 if and switch initializers
 compatibility: partial
+constexpr_if_initialization.rel: delete
 if_initialization.rel: delete
 switch_initialization.rel: delete
 exprparents.rel: run exprparents.qlo

cpp/downgrades/d8149ca90e695fe26f9a0c5a7fa0edd6d4ea3f5d/attribute_args.ql

@@ -0,0 +1,17 @@
+class AttributeArg extends @attribute_arg {
+  string toString() { none() }
+}
+
+class Attribute extends @attribute {
+  string toString() { none() }
+}
+
+class Location extends @location_default {
+  string toString() { none() }
+}
+
+from AttributeArg arg, int kind, int kind_new, Attribute attr, int index, Location location
+where
+  attribute_args(arg, kind, attr, index, location) and
+  if arg instanceof @attribute_arg_expr then kind_new = 0 else kind_new = kind
+select arg, kind_new, attr, index, location

cpp/downgrades/d8149ca90e695fe26f9a0c5a7fa0edd6d4ea3f5d/upgrade.properties

@@ -0,0 +1,4 @@
+description: Support expression attribute arguments
+compatibility: partial
+attribute_arg_expr.rel: delete
+attribute_args.rel: run attribute_args.qlo

cpp/downgrades/fc81eb5a3a7cdde8d9ad813da1e8f1e90dadbb91/upgrade.properties

@@ -0,0 +1,2 @@
+description: Revert removal of uniqueness constraint on link_targets/2
+compatibility: backwards

cpp/ql/lib/CHANGELOG.md

@@ -1,3 +1,78 @@
+## 0.12.8
+
+No user-facing changes.
+
+## 0.12.7
+
+### Minor Analysis Improvements
+
+* Added destructors for named objects to the intermediate representation.
+
+## 0.12.6
+
+### New Features
+
+* A `getInitialization` predicate was added to the `RangeBasedForStmt` class that yields the C++20-style initializer of the range-based `for` statement when it exists.
+
+## 0.12.5
+
+### New Features
+
+* Added the `PreprocBlock.qll` library to this repository.  This library offers a view of `#if`, `#elif`, `#else` and similar directives as a tree with navigable parent-child relationships.
+* Added a new `ThrowingFunction` abstract class that can be used to model an external function that may throw an exception.
+
+## 0.12.4
+
+### Minor Analysis Improvements
+
+* Deleted many deprecated predicates and classes with uppercase `XML`, `SSA`, `SAL`, `SQL`, etc. in their names. Use the PascalCased versions instead.
+* Deleted the deprecated `StrcatFunction` class, use `semmle.code.cpp.models.implementations.Strcat.qll` instead.
+
+## 0.12.3
+
+### Deprecated APIs
+
+* The `isUserInput`, `userInputArgument`, and `userInputReturned` predicates from `SecurityOptions` have been deprecated. Use `FlowSource` instead.
+
+### New Features
+
+* `UserDefineLiteral` and `DeductionGuide` classes have been added, representing C++11 user defined literals and C++17 deduction guides.
+
+### Minor Analysis Improvements
+
+* Changed the output of `Node.toString` to better reflect how many indirections a given dataflow node has.
+* Added a new predicate `Node.asDefinition` on `DataFlow::Node`s for selecting the dataflow node corresponding to a particular definition.
+* The deprecated `DefaultTaintTracking` library has been removed.
+* The `Guards` library has been replaced with the API-compatible `IRGuards` implementation, which has better precision in some cases.
+
+### Bug Fixes
+
+* Under certain circumstances a function declaration that is not also a definition could be associated with a `Function` that did not have the definition as a `FunctionDeclarationEntry`. This is now fixed when only one definition exists, and a unique `Function` will exist that has both the declaration and the definition as a `FunctionDeclarationEntry`.
+
+## 0.12.2
+
+No user-facing changes.
+
+## 0.12.1
+
+### New Features
+
+* Added an `isPrototyped` predicate to `Function` that holds when the function has a prototype.
+
+## 0.12.0
+
+### Breaking Changes
+
+* The expressions `AssignPointerAddExpr` and `AssignPointerSubExpr` are no longer subtypes of `AssignBitwiseOperation`.
+
+### Minor Analysis Improvements
+
+* The "Returning stack-allocated memory" (`cpp/return-stack-allocated-memory`) query now also detects returning stack-allocated memory allocated by calls to `alloca`, `strdupa`, and `strndupa`.
+* Added models for `strlcpy` and `strlcat`.
+* Added models for the `sprintf` variants from the `StrSafe.h` header.
+* Added SQL API models for `ODBC`.
+* Added taint models for `realloc` and related functions.
+
 ## 0.11.0
 
 ### Breaking Changes

cpp/ql/lib/DefaultOptions.qll

@@ -52,17 +52,18 @@ class Options extends string {
   /**
    * Holds if a call to this function will never return.
    *
-   * By default, this holds for `exit`, `_exit`, `abort`, `__assert_fail`,
-   * `longjmp`, `__builtin_unreachable` and any function with a
-   * `noreturn` attribute or specifier.
+   * By default, this holds for `exit`, `_exit`, `_Exit`, `abort`,
+   * `__assert_fail`, `longjmp`, `__builtin_unreachable` and any
+   * function with a `noreturn` or `__noreturn__` attribute or
+   * `noreturn` specifier.
    */
   predicate exits(Function f) {
-    f.getAnAttribute().hasName("noreturn")
+    f.getAnAttribute().hasName(["noreturn", "__noreturn__"])
     or
     f.getASpecifier().hasName("noreturn")
     or
     f.hasGlobalOrStdName([
-        "exit", "_exit", "abort", "__assert_fail", "longjmp", "__builtin_unreachable"
+        "exit", "_exit", "_Exit", "abort", "__assert_fail", "longjmp", "__builtin_unreachable"
       ])
     or
     CustomOptions::exits(f) // old Options.qll

cpp/ql/lib/IDEContextual.qll

@@ -3,6 +3,7 @@
  */
 
 import semmle.files.FileSystem
+private import codeql.util.FileSystem
 
 /**
  * Returns the `File` matching the given source file name as encoded by the VS
@@ -10,13 +11,5 @@ import semmle.files.FileSystem
  */
 cached
 File getFileBySourceArchiveName(string name) {
-  // The name provided for a file in the source archive by the VS Code extension
-  // has some differences from the absolute path in the database:
-  // 1. colons are replaced by underscores
-  // 2. there's a leading slash, even for Windows paths: "C:/foo/bar" ->
-  //    "/C_/foo/bar"
-  // 3. double slashes in UNC prefixes are replaced with a single slash
-  // We can handle 2 and 3 together by unconditionally adding a leading slash
-  // before replacing double slashes.
-  name = ("/" + result.getAbsolutePath().replaceAll(":", "_")).replaceAll("//", "/")
+  result = IdeContextual<File>::getFileBySourceArchiveName(name)
 }

cpp/ql/lib/change-notes/released/0.12.0.md

@@ -0,0 +1,13 @@
+## 0.12.0
+
+### Breaking Changes
+
+* The expressions `AssignPointerAddExpr` and `AssignPointerSubExpr` are no longer subtypes of `AssignBitwiseOperation`.
+
+### Minor Analysis Improvements
+
+* The "Returning stack-allocated memory" (`cpp/return-stack-allocated-memory`) query now also detects returning stack-allocated memory allocated by calls to `alloca`, `strdupa`, and `strndupa`.
+* Added models for `strlcpy` and `strlcat`.
+* Added models for the `sprintf` variants from the `StrSafe.h` header.
+* Added SQL API models for `ODBC`.
+* Added taint models for `realloc` and related functions.

cpp/ql/lib/change-notes/released/0.12.1.md

@@ -0,0 +1,5 @@
+## 0.12.1
+
+### New Features
+
+* Added an `isPrototyped` predicate to `Function` that holds when the function has a prototype.

cpp/ql/lib/change-notes/released/0.12.2.md

@@ -0,0 +1,3 @@
+## 0.12.2
+
+No user-facing changes.

cpp/ql/lib/change-notes/released/0.12.3.md

@@ -0,0 +1,20 @@
+## 0.12.3
+
+### Deprecated APIs
+
+* The `isUserInput`, `userInputArgument`, and `userInputReturned` predicates from `SecurityOptions` have been deprecated. Use `FlowSource` instead.
+
+### New Features
+
+* `UserDefineLiteral` and `DeductionGuide` classes have been added, representing C++11 user defined literals and C++17 deduction guides.
+
+### Minor Analysis Improvements
+
+* Changed the output of `Node.toString` to better reflect how many indirections a given dataflow node has.
+* Added a new predicate `Node.asDefinition` on `DataFlow::Node`s for selecting the dataflow node corresponding to a particular definition.
+* The deprecated `DefaultTaintTracking` library has been removed.
+* The `Guards` library has been replaced with the API-compatible `IRGuards` implementation, which has better precision in some cases.
+
+### Bug Fixes
+
+* Under certain circumstances a function declaration that is not also a definition could be associated with a `Function` that did not have the definition as a `FunctionDeclarationEntry`. This is now fixed when only one definition exists, and a unique `Function` will exist that has both the declaration and the definition as a `FunctionDeclarationEntry`.

cpp/ql/lib/change-notes/released/0.12.4.md

@@ -0,0 +1,6 @@
+## 0.12.4
+
+### Minor Analysis Improvements
+
+* Deleted many deprecated predicates and classes with uppercase `XML`, `SSA`, `SAL`, `SQL`, etc. in their names. Use the PascalCased versions instead.
+* Deleted the deprecated `StrcatFunction` class, use `semmle.code.cpp.models.implementations.Strcat.qll` instead.

cpp/ql/lib/change-notes/released/0.12.5.md

@@ -0,0 +1,6 @@
+## 0.12.5
+
+### New Features
+
+* Added the `PreprocBlock.qll` library to this repository.  This library offers a view of `#if`, `#elif`, `#else` and similar directives as a tree with navigable parent-child relationships.
+* Added a new `ThrowingFunction` abstract class that can be used to model an external function that may throw an exception.

cpp/ql/lib/change-notes/released/0.12.6.md

@@ -0,0 +1,5 @@
+## 0.12.6
+
+### New Features
+
+* A `getInitialization` predicate was added to the `RangeBasedForStmt` class that yields the C++20-style initializer of the range-based `for` statement when it exists.

cpp/ql/lib/change-notes/released/0.12.7.md

@@ -0,0 +1,5 @@
+## 0.12.7
+
+### Minor Analysis Improvements
+
+* Added destructors for named objects to the intermediate representation.

cpp/ql/lib/change-notes/released/0.12.8.md

@@ -0,0 +1,3 @@
+## 0.12.8
+
+No user-facing changes.

cpp/ql/lib/codeql-pack.release.yml

@@ -1,2 +1,2 @@
 ---
-lastReleaseVersion: 0.11.0
+lastReleaseVersion: 0.12.8

cpp/ql/lib/qlpack.yml

@@ -1,5 +1,5 @@
 name: codeql/cpp-all
-version: 0.11.0
+version: 0.12.8
 groups: cpp
 dbscheme: semmlecode.cpp.dbscheme
 extractor: cpp

cpp/ql/lib/semmle/code/cpp/Class.qll

@@ -380,9 +380,6 @@ class Class extends UserType {
    */
   predicate isPod() { is_pod_class(underlyingElement(this)) }
 
-  /** DEPRECATED: Alias for isPod */
-  deprecated predicate isPOD() { this.isPod() }
-
   /**
    * Holds if this class, struct or union is a standard-layout class
    * [N4140 9(7)]. Also holds for structs in C programs.

cpp/ql/lib/semmle/code/cpp/Element.qll

@@ -7,6 +7,7 @@ import semmle.code.cpp.Location
 private import semmle.code.cpp.Enclosing
 private import semmle.code.cpp.internal.ResolveClass
 private import semmle.code.cpp.internal.ResolveGlobalVariable
+private import semmle.code.cpp.internal.ResolveFunction
 
 /**
  * Get the `Element` that represents this `@element`.
@@ -30,11 +31,14 @@ pragma[inline]
 @element unresolveElement(Element e) {
   not result instanceof @usertype and
   not result instanceof @variable and
+  not result instanceof @function and
   result = e
   or
   e = resolveClass(result)
   or
   e = resolveGlobalVariable(result)
+  or
+  e = resolveFunction(result)
 }
 
 /**

cpp/ql/lib/semmle/code/cpp/Enclosing.qll

@@ -60,4 +60,6 @@ Element exprEnclosingElement(Expr e) {
       )
     else result = de.getDeclaration()
   )
+  or
+  result.(Stmt).getAnImplicitDestructorCall() = e
 }

cpp/ql/lib/semmle/code/cpp/Function.qll

@@ -9,6 +9,7 @@ import semmle.code.cpp.exprs.Call
 import semmle.code.cpp.metrics.MetricFunction
 import semmle.code.cpp.Linkage
 private import semmle.code.cpp.internal.ResolveClass
+private import semmle.code.cpp.internal.ResolveFunction
 
 /**
  * A C/C++ function [N4140 8.3.5]. Both member functions and non-member
@@ -25,6 +26,8 @@ private import semmle.code.cpp.internal.ResolveClass
  * in more detail in `Declaration.qll`.
  */
 class Function extends Declaration, ControlFlowNode, AccessHolder, @function {
+  Function() { isFunction(underlyingElement(this)) }
+
   override string getName() { functions(underlyingElement(this), result, _) }
 
   /**
@@ -112,6 +115,16 @@ class Function extends Declaration, ControlFlowNode, AccessHolder, @function {
    */
   predicate isDeleted() { function_deleted(underlyingElement(this)) }
 
+  /**
+   * Holds if this function has a prototyped interface.
+   *
+   * Functions generally have a prototyped interface, unless they are
+   * K&R-style functions either without any forward function declaration,
+   * or with all the forward declarations omitting the parameters of the
+   * function.
+   */
+  predicate isPrototyped() { function_prototyped(underlyingElement(this)) }
+
   /**
    * Holds if this function is explicitly defaulted with the `= default`
    * specifier.
@@ -318,6 +331,7 @@ class Function extends Declaration, ControlFlowNode, AccessHolder, @function {
   MetricFunction getMetrics() { result = this }
 
   /** Holds if this function calls the function `f`. */
+  pragma[nomagic]
   predicate calls(Function f) { this.calls(f, _) }
 
   /**
@@ -328,10 +342,6 @@ class Function extends Declaration, ControlFlowNode, AccessHolder, @function {
     exists(FunctionCall call |
       call.getEnclosingFunction() = this and call.getTarget() = f and call = l
     )
-    or
-    exists(DestructorCall call |
-      call.getEnclosingFunction() = this and call.getTarget() = f and call = l
-    )
   }
 
   /** Holds if this function accesses a function or variable or enumerator `a`. */
@@ -875,3 +885,17 @@ class BuiltInFunction extends Function {
 }
 
 private predicate suppressUnusedThis(Function f) { any() }
+
+/**
+ * A C++ user-defined literal [N4140 13.5.8].
+ */
+class UserDefinedLiteral extends Function {
+  UserDefinedLiteral() { functions(underlyingElement(this), _, 7) }
+}
+
+/**
+ * A C++ deduction guide [N4659 17.9].
+ */
+class DeductionGuide extends Function {
+  DeductionGuide() { functions(underlyingElement(this), _, 8) }
+}

cpp/ql/lib/semmle/code/cpp/PODType03.qll

@@ -104,9 +104,6 @@ predicate isPodClass03(Class c) {
   )
 }
 
-/** DEPRECATED: Alias for isPodClass03 */
-deprecated predicate isPODClass03 = isPodClass03/1;
-
 /**
  * Holds if `t` is a POD type, according to the rules specified in
  * C++03 3.9(10):
@@ -126,6 +123,3 @@ predicate isPodType03(Type t) {
     isPodType03(ut.(SpecifiedType).getUnspecifiedType())
   )
 }
-
-/** DEPRECATED: Alias for isPodType03 */
-deprecated predicate isPODType03 = isPodType03/1;

cpp/ql/lib/semmle/code/cpp/PrintAST.qll

@@ -306,7 +306,14 @@ class ExprNode extends AstNode {
 
   ExprNode() { expr = ast }
 
-  override AstNode getChildInternal(int childIndex) { result.getAst() = expr.getChild(childIndex) }
+  override AstNode getChildInternal(int childIndex) {
+    result.getAst() = expr.getChild(childIndex)
+    or
+    exists(int destructorIndex |
+      result.getAst() = expr.getImplicitDestructorCall(destructorIndex) and
+      childIndex = destructorIndex + max(int index | exists(expr.getChild(index)) or index = 0) + 1
+    )
+  }
 
   override string getProperty(string key) {
     result = super.getProperty(key)
@@ -439,6 +446,11 @@ class StmtNode extends AstNode {
         result.getAst() = child.(Stmt)
       )
     )
+    or
+    exists(int destructorIndex |
+      result.getAst() = stmt.getImplicitDestructorCall(destructorIndex) and
+      childIndex = destructorIndex + max(int index | exists(stmt.getChild(index)) or index = 0) + 1
+    )
   }
 
   override string getChildAccessorPredicateInternal(int childIndex) {
@@ -662,6 +674,10 @@ private string getChildAccessorWithoutConversions(Locatable parent, Element chil
       or
       not namedStmtChildPredicates(s, child, _) and
       exists(int n | s.getChild(n) = child and result = "getChild(" + n + ")")
+      or
+      exists(int n |
+        s.getImplicitDestructorCall(n) = child and result = "getImplicitDestructorCall(" + n + ")"
+      )
     )
     or
     exists(Expr expr | expr = parent |
@@ -669,6 +685,11 @@ private string getChildAccessorWithoutConversions(Locatable parent, Element chil
       or
       not namedExprChildPredicates(expr, child, _) and
       exists(int n | expr.getChild(n) = child and result = "getChild(" + n + ")")
+      or
+      exists(int n |
+        expr.getImplicitDestructorCall(n) = child and
+        result = "getImplicitDestructorCall(" + n + ")"
+      )
     )
   )
 }
@@ -714,7 +735,9 @@ private predicate namedStmtChildPredicates(Locatable s, Element e, string pred)
     or
     s.(ForStmt).getStmt() = e and pred = "getStmt()"
     or
-    s.(RangeBasedForStmt).getChild(0) = e and pred = "getChild(0)"
+    s.(RangeBasedForStmt).getInitialization() = e and pred = "getInitialization()"
+    or
+    s.(RangeBasedForStmt).getChild(1) = e and pred = "getChild(1)"
     or
     s.(RangeBasedForStmt).getBeginEndDeclaration() = e and pred = "getBeginEndDeclaration()"
     or
@@ -722,7 +745,7 @@ private predicate namedStmtChildPredicates(Locatable s, Element e, string pred)
     or
     s.(RangeBasedForStmt).getUpdate() = e and pred = "getUpdate()"
     or
-    s.(RangeBasedForStmt).getChild(4) = e and pred = "getChild(4)"
+    s.(RangeBasedForStmt).getChild(5) = e and pred = "getChild(5)"
     or
     s.(RangeBasedForStmt).getStmt() = e and pred = "getStmt()"
     or
@@ -814,7 +837,11 @@ private predicate namedExprChildPredicates(Expr expr, Element ele, string pred)
     or
     expr.(OverloadedArrayExpr).getArrayOffset() = ele and pred = "getArrayOffset()"
     or
-    expr.(OverloadedPointerDereferenceExpr).getExpr() = ele and pred = "getExpr()"
+    // OverloadedPointerDereferenceExpr::getExpr/0 also considers qualifiers, which are already handled above for all Call classes.
+    not expr.(OverloadedPointerDereferenceExpr).getQualifier() =
+      expr.(OverloadedPointerDereferenceExpr).getExpr() and
+    expr.(OverloadedPointerDereferenceExpr).getExpr() = ele and
+    pred = "getExpr()"
     or
     expr.(CommaExpr).getLeftOperand() = ele and pred = "getLeftOperand()"
     or

cpp/ql/lib/semmle/code/cpp/Specifier.qll

@@ -281,6 +281,11 @@ class AttributeArgument extends Element, @attribute_arg {
     attribute_arg_constant(underlyingElement(this), unresolveElement(result))
   }
 
+  /**
+   * Gets the value of this argument, if its value is an expression.
+   */
+  Expr getValueExpr() { attribute_arg_expr(underlyingElement(this), unresolveElement(result)) }
+
   /**
    * Gets the attribute to which this is an argument.
    */
@@ -308,7 +313,10 @@ class AttributeArgument extends Element, @attribute_arg {
           else
             if underlyingElement(this) instanceof @attribute_arg_constant_expr
             then tail = this.getValueConstant().toString()
-            else tail = this.getValueText()
+            else
+              if underlyingElement(this) instanceof @attribute_arg_expr
+              then tail = this.getValueExpr().toString()
+              else tail = this.getValueText()
         ) and
         result = prefix + tail
       )

cpp/ql/lib/semmle/code/cpp/Variable.qll

@@ -234,7 +234,16 @@ class VariableDeclarationEntry extends DeclarationEntry, @var_decl {
    * int f(int y) { return y; }
    * ```
    */
-  override string getName() { var_decls(underlyingElement(this), _, _, result, _) and result != "" }
+  override string getName() {
+    exists(string name |
+      var_decls(underlyingElement(this), _, _, name, _) and
+      (
+        name != "" and result = name
+        or
+        name = "" and result = this.getVariable().(LocalVariable).getName()
+      )
+    )
+  }
 
   /**
    * Gets the type of the variable which is being declared or defined.

cpp/ql/lib/semmle/code/cpp/XML.qll

@@ -32,9 +32,6 @@ class XmlLocatable extends @xmllocatable, TXmlLocatable {
   string toString() { none() } // overridden in subclasses
 }
 
-/** DEPRECATED: Alias for XmlLocatable */
-deprecated class XMLLocatable = XmlLocatable;
-
 /**
  * An `XmlParent` is either an `XmlElement` or an `XmlFile`,
  * both of which can contain other elements.
@@ -95,9 +92,6 @@ class XmlParent extends @xmlparent {
   string toString() { result = this.getName() }
 }
 
-/** DEPRECATED: Alias for XmlParent */
-deprecated class XMLParent = XmlParent;
-
 /** An XML file. */
 class XmlFile extends XmlParent, File {
   XmlFile() { xmlEncoding(this, _) }
@@ -119,14 +113,8 @@ class XmlFile extends XmlParent, File {
 
   /** Gets a DTD associated with this XML file. */
   XmlDtd getADtd() { xmlDTDs(result, _, _, _, this) }
-
-  /** DEPRECATED: Alias for getADtd */
-  deprecated XmlDtd getADTD() { result = this.getADtd() }
 }
 
-/** DEPRECATED: Alias for XmlFile */
-deprecated class XMLFile = XmlFile;
-
 /**
  * An XML document type definition (DTD).
  *
@@ -163,9 +151,6 @@ class XmlDtd extends XmlLocatable, @xmldtd {
   }
 }
 
-/** DEPRECATED: Alias for XmlDtd */
-deprecated class XMLDTD = XmlDtd;
-
 /**
  * An XML element in an XML file.
  *
@@ -221,9 +206,6 @@ class XmlElement extends @xmlelement, XmlParent, XmlLocatable {
   override string toString() { result = this.getName() }
 }
 
-/** DEPRECATED: Alias for XmlElement */
-deprecated class XMLElement = XmlElement;
-
 /**
  * An attribute that occurs inside an XML element.
  *
@@ -254,9 +236,6 @@ class XmlAttribute extends @xmlattribute, XmlLocatable {
   override string toString() { result = this.getName() + "=" + this.getValue() }
 }
 
-/** DEPRECATED: Alias for XmlAttribute */
-deprecated class XMLAttribute = XmlAttribute;
-
 /**
  * A namespace used in an XML file.
  *
@@ -273,9 +252,6 @@ class XmlNamespace extends XmlLocatable, @xmlnamespace {
   /** Gets the URI of this namespace. */
   string getUri() { xmlNs(this, _, result, _) }
 
-  /** DEPRECATED: Alias for getUri */
-  deprecated string getURI() { result = this.getUri() }
-
   /** Holds if this namespace has no prefix. */
   predicate isDefault() { this.getPrefix() = "" }
 
@@ -286,9 +262,6 @@ class XmlNamespace extends XmlLocatable, @xmlnamespace {
   }
 }
 
-/** DEPRECATED: Alias for XmlNamespace */
-deprecated class XMLNamespace = XmlNamespace;
-
 /**
  * A comment in an XML file.
  *
@@ -309,9 +282,6 @@ class XmlComment extends @xmlcomment, XmlLocatable {
   override string toString() { result = this.getText() }
 }
 
-/** DEPRECATED: Alias for XmlComment */
-deprecated class XMLComment = XmlComment;
-
 /**
  * A sequence of characters that occurs between opening and
  * closing tags of an XML element, excluding other elements.
@@ -335,6 +305,3 @@ class XmlCharacters extends @xmlcharacters, XmlLocatable {
   /** Gets a printable representation of this XML character sequence. */
   override string toString() { result = this.getCharacters() }
 }
-
-/** DEPRECATED: Alias for XmlCharacters */
-deprecated class XMLCharacters = XmlCharacters;

cpp/ql/lib/semmle/code/cpp/commons/NULL.qll

@@ -5,9 +5,6 @@ class NullMacro extends Macro {
   NullMacro() { this.getHead() = "NULL" }
 }
 
-/** DEPRECATED: Alias for NullMacro */
-deprecated class NULLMacro = NullMacro;
-
 /** A use of the NULL macro. */
 class NULL extends Literal {
   NULL() { exists(NullMacro nm | this = nm.getAnInvocation().getAnExpandedElement()) }