Adds the mog action

The mog action will add a `merge-on-green` label to a PR if a user adds a comment that contains the word "MOG" in it.

.bazelrc

@@ -1,3 +0,0 @@
-build --repo_env=CC=clang --repo_env=CXX=clang++ --copt="-std=c++17"
-
-try-import %workspace%/local.bazelrc

.bazelversion

@@ -1 +0,0 @@
-5.0.0

.codeqlmanifest.json

@@ -1,30 +1,5 @@
-{
-    "provide": [
-        "*/ql/src/qlpack.yml",
-        "*/ql/lib/qlpack.yml",
-        "*/ql/test/qlpack.yml",
-        "*/ql/examples/qlpack.yml",
-        "*/ql/consistency-queries/qlpack.yml",
-        "cpp/ql/test/query-tests/Security/CWE/CWE-190/semmle/tainted/qlpack.yml",
-        "go/ql/config/legacy-support/qlpack.yml",
-        "go/build/codeql-extractor-go/codeql-extractor.yml",
-        "javascript/ql/experimental/adaptivethreatmodeling/lib/qlpack.yml",
-        "javascript/ql/experimental/adaptivethreatmodeling/modelbuilding/qlpack.yml",
-        "javascript/ql/experimental/adaptivethreatmodeling/src/qlpack.yml",
-        "csharp/ql/campaigns/Solorigate/lib/qlpack.yml",
-        "csharp/ql/campaigns/Solorigate/src/qlpack.yml",
-        "csharp/ql/campaigns/Solorigate/test/qlpack.yml",
-        "misc/legacy-support/*/qlpack.yml",
-        "misc/suite-helpers/qlpack.yml",
-        "ruby/extractor-pack/codeql-extractor.yml",
-        "swift/extractor-pack/codeql-extractor.yml",
-        "ql/extractor-pack/codeql-extractor.yml"
-    ],
-    "versionPolicies": {
-      "default": {
-        "requireChangeNotes": true,
-        "committedPrereleaseSuffix": "dev",
-        "committedVersion": "nextPatchRelease"
-      }
-    }
-}
+{ "provide": [ "*/ql/src/qlpack.yml",
+               "*/ql/test/qlpack.yml",
+               "*/upgrades/qlpack.yml",
+               "misc/legacy-support/*/qlpack.yml",
+               "misc/suite-helpers/qlpack.yml" ] }

.devcontainer/devcontainer.json

@@ -1,16 +1,9 @@
 {
   "extensions": [
-    "rust-lang.rust",
-    "bungcip.better-toml",
     "github.vscode-codeql",
-    "hbenl.vscode-test-explorer",
-    "ms-vscode.test-adapter-converter",
     "slevesque.vscode-zipexplorer"
   ],
   "settings": {
-    "files.watcherExclude": {
-      "**/target/**": true
-    },
-    "codeQL.runningQueries.memory": 2048
+    "codeQL.experimentalBqrsParsing": true
   }
 }

.gitattributes

@@ -39,7 +39,6 @@
 *.py text
 *.lua text
 *.expected text
-*.go text
 
 # Explicitly set a bunch of known extensions to binary, because Git < 2.10 will treat
 # `* text=auto eol=lf` as `* text eol=lf`
@@ -49,25 +48,3 @@
 *.gif -text
 *.dll -text
 *.pdb -text
-
-java/ql/test/stubs/**/*.java linguist-generated=true
-java/ql/test/experimental/stubs/**/*.java linguist-generated=true
-
-# Force git not to modify line endings for go or html files under the go/ql directory
-go/ql/**/*.go -text
-go/ql/**/*.html -text
-# Force git not to modify line endings for go dbschemes
-go/*.dbscheme -text
-# Preserve unusual line ending from codeql-go merge
-go/extractor/opencsv/CSVReader.java -text
-
-# For some languages, upgrade script testing references really old dbscheme
-# files from legacy upgrades that have CRLF line endings. Since upgrade
-# resolution relies on object hashes, we must suppress line ending conversion
-# for those testing dbscheme files.
-*/ql/lib/upgrades/initial/*.dbscheme -text
-
-# Generated test files - these are synced from the standard JavaScript libraries using
-# `javascript/ql/experimental/adaptivethreatmodeling/test/update_endpoint_test_files.py`.
-javascript/ql/experimental/adaptivethreatmodeling/test/endpoint_large_scale/autogenerated/**/*.js linguist-generated=true -merge
-javascript/ql/experimental/adaptivethreatmodeling/test/endpoint_large_scale/autogenerated/**/*.ts linguist-generated=true -merge

.github/actions/fetch-codeql/action.yml

@@ -1,24 +0,0 @@
-name: Fetch CodeQL
-description: Fetches the latest version of CodeQL
-runs:
-  using: composite
-  steps:
-    - name: Select platform - Linux
-      if: runner.os == 'Linux'
-      shell: bash
-      run: echo "GA_CODEQL_CLI_PLATFORM=linux64" >> $GITHUB_ENV
-
-    - name: Select platform - MacOS
-      if: runner.os == 'MacOS'
-      shell: bash
-      run: echo "GA_CODEQL_CLI_PLATFORM=osx64" >> $GITHUB_ENV
-
-    - name: Fetch CodeQL
-      shell: bash
-      run: |
-        LATEST=$(gh release list --repo https://github.com/github/codeql-cli-binaries | cut -f 1 | grep -v beta | sort --version-sort | tail -1)
-        gh release download --repo https://github.com/github/codeql-cli-binaries --pattern codeql-$GA_CODEQL_CLI_PLATFORM.zip "$LATEST"
-        unzip -q -d "${RUNNER_TEMP}" codeql-$GA_CODEQL_CLI_PLATFORM.zip
-        echo "${RUNNER_TEMP}/codeql" >> "${GITHUB_PATH}"
-      env:
-        GITHUB_TOKEN: ${{ github.token }}

.github/codeql/codeql-config.yml

@@ -7,5 +7,3 @@ paths-ignore:
   - '/cpp/'
   - '/java/'
   - '/python/'
-  - '/javascript/ql/test'
-  - '/javascript/extractor/tests'

.github/dependabot.yml

@@ -1,26 +0,0 @@
-version: 2
-updates:
-  - package-ecosystem: "cargo"
-    directory: "ruby/node-types"
-    schedule:
-      interval: "daily"
-  - package-ecosystem: "cargo"
-    directory: "ruby/generator"
-    schedule:
-      interval: "daily"
-  - package-ecosystem: "cargo"
-    directory: "ruby/extractor"
-    schedule:
-      interval: "daily"
-  - package-ecosystem: "cargo"
-    directory: "ruby/autobuilder"
-    schedule:
-      interval: "daily"
-
-  - package-ecosystem: "github-actions"
-    directory: "/"
-    schedule:
-      interval: "daily"
-    ignore:
-      - dependency-name: '*'
-        update-types: ['version-update:semver-patch', 'version-update:semver-minor']

.github/labeler.yml

@@ -11,25 +11,14 @@ Java:
   - change-notes/**/*java.*
 
 JS:
-  - any: [ 'javascript/**/*', '!javascript/ql/experimental/adaptivethreatmodeling/**/*' ]
+  - javascript/**/*
   - change-notes/**/*javascript*
 
 Python:
   - python/**/*
   - change-notes/**/*python*
 
-Ruby:
-  - ruby/**/*
-  - change-notes/**/*ruby*
-  
-Swift:
-  - swift/**/*
-  - change-notes/**/*swift*
-
 documentation:
   - "**/*.qhelp"
   - "**/*.md"
   - docs/**/*
-
-"QL-for-QL": 
-  - ql/**/*

.github/problem-matchers/codeql-query-format.json

@@ -1,14 +0,0 @@
-{
-    "problemMatcher": [
-        {
-            "owner": "codeql-query-format",
-            "pattern": [
-                {
-                    "regexp": "^((.*) would change by autoformatting\\.)$",
-                    "file": 2,
-                    "message": 1
-                }
-            ]
-        }
-    ]
-}

.github/problem-matchers/codeql-syntax-check.json

@@ -1,17 +0,0 @@
-{
-    "problemMatcher": [
-        {
-            "owner": "codeql-syntax-check",
-            "pattern": [
-                {
-                    "regexp": "^((ERROR|WARNING): .* \\((.*):(\\d+),(\\d+)-\\d+\\))$",
-                    "message": 1,
-                    "file": 3,
-                    "line": 4,
-                    "col": 5,
-                    "severity": 2
-                }
-            ]
-        }
-    ]
-}

.github/problem-matchers/codeql-test-run.json

@@ -1,14 +0,0 @@
-{
-    "problemMatcher": [
-        {
-            "owner": "codeql-test-run",
-            "pattern": [
-                {
-                    "regexp": "(\\[.*\\] FAILED\\((RESULT|COMPILATION)\\) (.*))$",
-                    "file": 3,
-                    "message": 1
-                }
-            ]
-        }
-    ]
-}

.github/problem-matchers/make.json

@@ -1,13 +0,0 @@
-{
-    "problemMatcher": [
-        {
-            "owner": "make",
-            "pattern": [
-                {
-                    "regexp": "^(make: \\*\\*\\* .*)$",
-                    "message": 1
-                }
-            ]
-        }
-    ]
-}

.github/workflows/add-mog-label.yml

@@ -0,0 +1,22 @@
+name: "Add Merge on Green Label"
+
+on:
+  issue_comment:
+    types: [created, edited]
+
+jobs:
+  addMogLabel:
+    runs-on: ubuntu-latest
+    if:
+      ${{ github.event.issue.pull_request && contains(github.event.comment.body, 'mog') }}
+    steps:
+      - name: Add label using Request Action
+        uses: octokit/request-action@v2.x
+        with:
+          route: POST /repos/:repository/issues/:issue_number/labels
+          repository: ${{ github.repository }}
+          issue_number: ${{ github.event.issue.number }}
+          labels: |
+            - "merge-on-green"
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/check-change-note.yml

@@ -1,27 +0,0 @@
-name: Check change note
-
-on:
-  pull_request_target:
-    types: [labeled, unlabeled, opened, synchronize, reopened, ready_for_review]
-    paths:
-      - "*/ql/src/**/*.ql"
-      - "*/ql/src/**/*.qll"
-      - "*/ql/lib/**/*.ql"
-      - "*/ql/lib/**/*.qll"
-      - "!**/experimental/**"
-      - "!ql/**"
-      - ".github/workflows/check-change-note.yml"
-
-jobs:
-  check-change-note:
-    runs-on: ubuntu-latest
-    steps:
-      - name: Fail if no change note found. To fix, either add one, or add the `no-change-note-required` label.
-        if: |
-          github.event.pull_request.draft == false &&
-          !contains(github.event.pull_request.labels.*.name, 'no-change-note-required')
-        env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-        run: |
-          gh api 'repos/${{github.repository}}/pulls/${{github.event.number}}/files' --paginate --jq 'any(.[].filename ; test("/change-notes/.*[.]md$"))' |
-          grep true -c

.github/workflows/check-qldoc.yml

@@ -1,54 +0,0 @@
-name: "Check QLdoc coverage"
-
-on:
-  pull_request:
-    paths:
-      - "*/ql/lib/**"
-      - .github/workflows/check-qldoc.yml
-    branches:
-      - main
-      - "rc/*"
-
-jobs:
-  qldoc:
-    runs-on: ubuntu-latest
-
-    steps:
-      - name: Install CodeQL
-        run: |
-          gh extension install github/gh-codeql
-          gh codeql set-channel nightly
-          gh codeql version
-        env:
-          GITHUB_TOKEN: ${{ github.token }}
-
-      - uses: actions/checkout@v3
-        with:
-          fetch-depth: 2
-
-      - name: Check QLdoc coverage
-        shell: bash
-        run: |
-          EXIT_CODE=0
-          # TODO: remove the swift exception from the regex when we fix generated QLdoc
-          changed_lib_packs="$(git diff --name-only --diff-filter=ACMRT HEAD^ HEAD | { grep -Po '^(?!swift)[a-z]*/ql/lib' || true; } | sort -u)"
-          for pack_dir in ${changed_lib_packs}; do
-            lang="${pack_dir%/ql/lib}"
-            gh codeql generate library-doc-coverage --output="${RUNNER_TEMP}/${lang}-current.txt" --dir="${pack_dir}"
-          done
-          git checkout HEAD^
-          for pack_dir in ${changed_lib_packs}; do
-            # When we add a new language, pack_dir would not exist in HEAD^.
-            # In this case the right thing to do is to skip the check.
-            [[ ! -d "${pack_dir}" ]] && continue
-            lang="${pack_dir%/ql/lib}"
-            gh codeql generate library-doc-coverage --output="${RUNNER_TEMP}/${lang}-baseline.txt" --dir="${pack_dir}"
-            awk -F, '{gsub(/"/,""); if ($4==0 && $6=="public") print "\""$3"\"" }' "${RUNNER_TEMP}/${lang}-current.txt" | sort -u > "${RUNNER_TEMP}/current-undocumented.txt"
-            awk -F, '{gsub(/"/,""); if ($4==0 && $6=="public") print "\""$3"\"" }' "${RUNNER_TEMP}/${lang}-baseline.txt" | sort -u > "${RUNNER_TEMP}/baseline-undocumented.txt"
-            UNDOCUMENTED="$(grep -f <(comm -13 "${RUNNER_TEMP}/baseline-undocumented.txt" "${RUNNER_TEMP}/current-undocumented.txt") "${RUNNER_TEMP}/${lang}-current.txt" || true)"
-            if [ -n "$UNDOCUMENTED" ]; then
-              echo "$UNDOCUMENTED" | awk -F, '{gsub(/"/,""); print "::warning file='"${pack_dir}"'/"$1",line="$2"::Missing QLdoc for "$5, $3 }'
-              EXIT_CODE=1
-            fi
-          done
-          exit "${EXIT_CODE}"

.github/workflows/close-stale.yml

@@ -1,30 +0,0 @@
-name: Mark stale issues
-
-on:
-  workflow_dispatch:
-  schedule:
-    - cron: "30 1 * * *"
-
-jobs:
-  stale:
-    if: github.repository == 'github/codeql'
-
-    runs-on: ubuntu-latest
-
-    steps:
-    - uses: actions/stale@v5
-      with:
-        repo-token: ${{ secrets.GITHUB_TOKEN }}
-        stale-issue-message: 'This issue is stale because it has been open 14 days with no activity. Comment or remove the `Stale` label in order to avoid having this issue closed in 7 days.'
-        close-issue-message: 'This issue was closed because it has been inactive for 7 days.'
-        days-before-stale: 14
-        days-before-close: 7
-        only-labels: awaiting-response
-
-        # do not mark PRs as stale
-        days-before-pr-stale: -1
-        days-before-pr-close: -1
-
-        # Uncomment for dry-run
-        # debug-only: true
-        # operations-per-run: 1000

.github/workflows/codeql-analysis.yml

@@ -2,17 +2,7 @@ name: "Code scanning - action"
 
 on:
   push:
-    branches:
-      - main
-      - 'rc/*'
   pull_request:
-    branches:
-      - main
-      - 'rc/*'
-    paths:
-      - 'csharp/**'
-      - '.github/codeql/**'
-      - '.github/workflows/codeql-analysis.yml'
   schedule:
     - cron: '0 9 * * 1'
 
@@ -21,23 +11,22 @@ jobs:
 
     runs-on: ubuntu-latest
 
-    permissions:
-      contents: read
-      security-events: write
-      pull-requests: read
-
     steps:
-    - name: Setup dotnet
-      uses: actions/setup-dotnet@v2
-      with:
-        dotnet-version: 6.0.202
-
     - name: Checkout repository
-      uses: actions/checkout@v3
+      uses: actions/checkout@v2
+      with:
+        # We must fetch at least the immediate parents so that if this is
+        # a pull request then we can checkout the head.
+        fetch-depth: 2
 
+    # If this run was triggered by a pull request event, then checkout
+    # the head of the pull request instead of the merge commit.
+    - run: git checkout HEAD^2
+      if: ${{ github.event_name == 'pull_request' }}
+      
     # Initializes the CodeQL tools for scanning.
     - name: Initialize CodeQL
-      uses: github/codeql-action/init@main
+      uses: github/codeql-action/init@v1
       # Override language selection by uncommenting this and choosing your languages
       with:
         languages: csharp
@@ -45,18 +34,19 @@ jobs:
 
     # Autobuild attempts to build any compiled languages  (C/C++, C#, or Java).
     # If this step fails, then you should remove it and run the build manually (see below)
-    #- name: Autobuild
-    #  uses: github/codeql-action/autobuild@main
+    - name: Autobuild
+      uses: github/codeql-action/autobuild@v1
 
     # ℹ️ Command-line programs to run using the OS shell.
-    # 📚 https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
+    # 📚 https://git.io/JvXDl
 
     # ✏️ If the Autobuild fails above, remove it and uncomment the following three lines
     #    and modify them (or add more) to build your code if your project
     #    uses a compiled language
 
-    - run: |
-       dotnet build csharp /p:UseSharedCompilation=false
+    #- run: |
+    #   make bootstrap
+    #   make release
 
     - name: Perform CodeQL Analysis
-      uses: github/codeql-action/analyze@main
+      uses: github/codeql-action/analyze@v1

.github/workflows/csv-coverage-metrics.yml

@@ -1,70 +0,0 @@
-name: "Publish framework coverage as metrics"
-
-on:
-  schedule:
-    - cron: '5 0 * * *'
-  push:
-    branches:
-      - main
-  workflow_dispatch:
-  pull_request:
-    branches:
-      - main
-    paths:
-      - ".github/workflows/csv-coverage-metrics.yml"
-
-jobs:
-  publish-java:
-    runs-on: ubuntu-latest
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@v3
-      - name: Setup CodeQL
-        uses: ./.github/actions/fetch-codeql
-      - name: Create empty database
-        run: |
-          DATABASE="${{ runner.temp }}/java-database"
-          PROJECT="${{ runner.temp }}/java-project"
-          mkdir -p "$PROJECT/src/tmp/empty"
-          echo "class Empty {}" >> "$PROJECT/src/tmp/empty/Empty.java"
-          codeql database create "$DATABASE" --language=java --source-root="$PROJECT" --command 'javac src/tmp/empty/Empty.java'
-      - name: Capture coverage information
-        run: |
-          DATABASE="${{ runner.temp }}/java-database"
-          codeql database analyze --format=sarif-latest --output=metrics-java.sarif -- "$DATABASE" ./java/ql/src/Metrics/Summaries/FrameworkCoverage.ql
-      - uses: actions/upload-artifact@v3
-        with:
-          name: metrics-java.sarif
-          path: metrics-java.sarif
-          retention-days: 20
-      - name: Upload SARIF file
-        uses: github/codeql-action/upload-sarif@main
-        with:
-          sarif_file: metrics-java.sarif
-  
-  publish-csharp:
-    runs-on: ubuntu-latest
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@v3
-      - name: Setup CodeQL
-        uses: ./.github/actions/fetch-codeql
-      - name: Create empty database
-        run: |
-          DATABASE="${{ runner.temp }}/csharp-database"
-          PROJECT="${{ runner.temp }}/csharp-project"
-          dotnet new classlib --language=C# --output="$PROJECT"
-          codeql database create "$DATABASE" --language=csharp --source-root="$PROJECT" --command 'dotnet build /t:rebuild csharp-project.csproj /p:UseSharedCompilation=false'
-      - name: Capture coverage information
-        run: |
-          DATABASE="${{ runner.temp }}/csharp-database"
-          codeql database analyze --format=sarif-latest --output=metrics-csharp.sarif -- "$DATABASE" ./csharp/ql/src/Metrics/Summaries/FrameworkCoverage.ql
-      - uses: actions/upload-artifact@v3
-        with:
-          name: metrics-csharp.sarif
-          path: metrics-csharp.sarif
-          retention-days: 20
-      - name: Upload SARIF file
-        uses: github/codeql-action/upload-sarif@main
-        with:
-          sarif_file: metrics-csharp.sarif

.github/workflows/csv-coverage-pr-artifacts.yml

@@ -1,99 +0,0 @@
-name: Check framework coverage changes
-
-on:
-  pull_request:
-    paths:
-      - '.github/workflows/csv-coverage-pr-comment.yml'
-      - '*/ql/src/**/*.ql'
-      - '*/ql/src/**/*.qll'
-      - '*/ql/lib/**/*.ql'
-      - '*/ql/lib/**/*.qll'
-      - 'misc/scripts/library-coverage/*.py'
-      # input data files
-      - '*/documentation/library-coverage/cwe-sink.csv'
-      - '*/documentation/library-coverage/frameworks.csv'
-    branches:
-      - main
-      - 'rc/*'
-
-jobs:
-  generate:
-    name: Generate framework coverage artifacts
-
-    runs-on: ubuntu-latest
-
-    steps:
-    - name: Dump GitHub context
-      env:
-        GITHUB_CONTEXT: ${{ toJSON(github.event) }}
-      run: echo "$GITHUB_CONTEXT"
-    - name: Clone self (github/codeql) - MERGE
-      uses: actions/checkout@v3
-      with:
-        path: merge
-    - name: Clone self (github/codeql) - BASE
-      uses: actions/checkout@v3
-      with:
-        fetch-depth: 2
-        path: base
-    - run: |
-        git checkout HEAD^1
-        git log -1 --format='%H'
-      working-directory: base
-    - name: Set up Python 3.8
-      uses: actions/setup-python@v3
-      with:
-        python-version: 3.8
-    - name: Download CodeQL CLI
-      env:
-         GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-      run: |
-         gh release download --repo "github/codeql-cli-binaries" --pattern "codeql-linux64.zip"
-    - name: Unzip CodeQL CLI
-      run: unzip -d codeql-cli codeql-linux64.zip
-    - name: Generate CSV files on merge commit of the PR
-      run: |
-        echo "Running generator on merge"
-        PATH="$PATH:codeql-cli/codeql" python merge/misc/scripts/library-coverage/generate-report.py ci merge merge
-        mkdir out_merge
-        cp framework-coverage-*.csv out_merge/
-        cp framework-coverage-*.rst out_merge/
-    - name: Generate CSV files on base commit of the PR
-      run: |
-        echo "Running generator on base"
-        PATH="$PATH:codeql-cli/codeql" python base/misc/scripts/library-coverage/generate-report.py ci base base
-        mkdir out_base
-        cp framework-coverage-*.csv out_base/
-        cp framework-coverage-*.rst out_base/
-    - name: Generate diff of coverage reports
-      run: |
-        python base/misc/scripts/library-coverage/compare-folders.py out_base out_merge comparison.md
-    - name: Upload CSV package list
-      uses: actions/upload-artifact@v3
-      with:
-        name: csv-framework-coverage-merge
-        path: |
-          out_merge/framework-coverage-*.csv
-          out_merge/framework-coverage-*.rst
-    - name: Upload CSV package list
-      uses: actions/upload-artifact@v3
-      with:
-        name: csv-framework-coverage-base
-        path: |
-          out_base/framework-coverage-*.csv
-          out_base/framework-coverage-*.rst
-    - name: Upload comparison results
-      uses: actions/upload-artifact@v3
-      with:
-        name: comparison
-        path: |
-          comparison.md
-    - name: Save PR number
-      run: |
-        mkdir -p pr
-        echo ${{ github.event.pull_request.number }} > pr/NR
-    - name: Upload PR number
-      uses: actions/upload-artifact@v3
-      with:
-        name: pr
-        path: pr/

.github/workflows/csv-coverage-pr-comment.yml

@@ -1,34 +0,0 @@
-name: Comment on PR with framework coverage changes
-
-on:
-  workflow_run:
-    workflows: ["Check framework coverage changes"]
-    types:
-      - completed
-
-jobs:
-  check:
-    name: Check framework coverage differences and comment
-    runs-on: ubuntu-latest
-    if: >
-      ${{ github.event.workflow_run.event == 'pull_request' &&
-      github.event.workflow_run.conclusion == 'success' }}
-
-    steps:
-    - name: Dump GitHub context
-      env:
-        GITHUB_CONTEXT: ${{ toJSON(github.event) }}
-      run: echo "$GITHUB_CONTEXT"
-    - name: Clone self (github/codeql)
-      uses: actions/checkout@v3
-    - name: Set up Python 3.8
-      uses: actions/setup-python@v3
-      with:
-        python-version: 3.8
-
-    - name: Check coverage difference file and comment
-      env:
-        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-        RUN_ID: ${{ github.event.workflow_run.id }}
-      run: |
-        python misc/scripts/library-coverage/comment-pr.py "$GITHUB_REPOSITORY" "$RUN_ID"

.github/workflows/csv-coverage-timeseries.yml

@@ -1,42 +0,0 @@
-name: Build framework coverage timeseries reports
-
-on:
-  workflow_dispatch:
-
-jobs:
-  build:
-
-    runs-on: ubuntu-latest
-
-    steps:
-    - name: Clone self (github/codeql)
-      uses: actions/checkout@v3
-      with:
-        path: script
-    - name: Clone self (github/codeql) for analysis
-      uses: actions/checkout@v3
-      with:
-        path: codeqlModels
-        fetch-depth: 0
-    - name: Set up Python 3.8
-      uses: actions/setup-python@v3
-      with:
-        python-version: 3.8
-    - name: Download CodeQL CLI
-      env:
-         GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-      run: |
-         gh release download --repo "github/codeql-cli-binaries" --pattern "codeql-linux64.zip"
-    - name: Unzip CodeQL CLI
-      run: unzip -d codeql-cli codeql-linux64.zip
-    - name: Build modeled package list
-      run: |
-        CLI=$(realpath "codeql-cli/codeql")
-        echo $CLI
-        PATH="$PATH:$CLI" python script/misc/scripts/library-coverage/generate-timeseries.py codeqlModels
-    - name: Upload timeseries CSV
-      uses: actions/upload-artifact@v3
-      with:
-        name: framework-coverage-timeseries
-        path: framework-coverage-timeseries-*.csv
-

.github/workflows/csv-coverage-update.yml

@@ -1,44 +0,0 @@
-name: Update framework coverage reports
-
-on:
-  workflow_dispatch:
-  schedule:
-    - cron: "0 0 * * *"
-
-jobs:
-  update:
-    name: Update framework coverage report
-    if: github.repository == 'github/codeql'
-    runs-on: ubuntu-latest
-
-    steps:
-    - name: Dump GitHub context
-      env:
-        GITHUB_CONTEXT: ${{ toJSON(github.event) }}
-      run: echo "$GITHUB_CONTEXT"
-    - name: Clone self (github/codeql)
-      uses: actions/checkout@v3
-      with:
-        path: ql
-        fetch-depth: 0
-    - name: Set up Python 3.8
-      uses: actions/setup-python@v3
-      with:
-        python-version: 3.8
-    - name: Download CodeQL CLI
-      env:
-         GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-      run: |
-         gh release download --repo "github/codeql-cli-binaries" --pattern "codeql-linux64.zip"
-    - name: Unzip CodeQL CLI
-      run: unzip -d codeql-cli codeql-linux64.zip
-
-    - name: Generate coverage files
-      run: |
-        PATH="$PATH:codeql-cli/codeql" python ql/misc/scripts/library-coverage/generate-report.py ci ql ql
-
-    - name: Create pull request with changes
-      env:
-         GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-      run: |
-        python ql/misc/scripts/library-coverage/create-pr.py ql "$GITHUB_REPOSITORY"

.github/workflows/csv-coverage.yml

@@ -1,49 +0,0 @@
-name: Build framework coverage reports
-
-on:
-  workflow_dispatch:
-    inputs:
-      qlModelShaOverride:
-        description: 'github/codeql repo SHA used for looking up the CSV models'
-        required: false
-
-jobs:
-  build:
-
-    runs-on: ubuntu-latest
-
-    steps:
-    - name: Clone self (github/codeql)
-      uses: actions/checkout@v3
-      with:
-        path: script
-    - name: Clone self (github/codeql) for analysis
-      uses: actions/checkout@v3
-      with:
-        path: codeqlModels
-        ref: ${{ github.event.inputs.qlModelShaOverride || github.ref }}
-    - name: Set up Python 3.8
-      uses: actions/setup-python@v3
-      with:
-        python-version: 3.8
-    - name: Download CodeQL CLI
-      env:
-         GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-      run: |
-         gh release download --repo "github/codeql-cli-binaries" --pattern "codeql-linux64.zip"
-    - name: Unzip CodeQL CLI
-      run: unzip -d codeql-cli codeql-linux64.zip
-    - name: Build modeled package list
-      run: |
-        PATH="$PATH:codeql-cli/codeql" python script/misc/scripts/library-coverage/generate-report.py ci codeqlModels script
-    - name: Upload CSV package list
-      uses: actions/upload-artifact@v3
-      with:
-        name: framework-coverage-csv
-        path: framework-coverage-*.csv
-    - name: Upload RST package list
-      uses: actions/upload-artifact@v3
-      with:
-        name: framework-coverage-rst
-        path: framework-coverage-*.rst
-

.github/workflows/go-tests.yml

@@ -1,161 +0,0 @@
-name: "Go: Run Tests"
-on:
-  pull_request:
-    paths:
-      - "go/**"
-      - .github/workflows/go-tests.yml
-jobs:
-
-  test-linux:
-    name: Test Linux (Ubuntu)
-    runs-on: ubuntu-latest
-    steps:
-
-    - name: Set up Go 1.18.1
-      uses: actions/setup-go@v3
-      with:
-        go-version: 1.18.1
-      id: go
-
-    - name: Set up CodeQL CLI
-      run: |
-        echo "Removing old CodeQL Directory..."
-        rm -rf $HOME/codeql
-        echo "Done"
-        cd $HOME
-        echo "Downloading CodeQL CLI..."
-        LATEST=$(gh release list --repo https://github.com/github/codeql-cli-binaries | cut -f 1 | sort --version-sort | grep -v beta | tail -1)
-        gh release download --repo https://github.com/github/codeql-cli-binaries --pattern codeql-linux64.zip "$LATEST"
-        echo "Done"
-        echo "Unpacking CodeQL CLI..."
-        unzip -q codeql-linux64.zip
-        rm -f codeql-linux64.zip
-        echo "Done"
-      env:
-        GITHUB_TOKEN: ${{ github.token }}
-
-    - name: Check out code
-      uses: actions/checkout@v2
-
-    - name: Enable problem matchers in repository
-      shell: bash
-      run: 'find .github/problem-matchers -name \*.json -exec echo "::add-matcher::{}" \;'
-
-    - name: Build
-      run: |
-        cd go
-        env PATH=$PATH:$HOME/codeql make
-
-    - name: Check that all QL and Go code is autoformatted
-      run: |
-        cd go
-        env PATH=$PATH:$HOME/codeql make check-formatting
-
-    - name: Compile qhelp files to markdown
-      run: |
-        cd go
-        env PATH=$PATH:$HOME/codeql QHELP_OUT_DIR=qhelp-out make qhelp-to-markdown
-
-    - name: Upload qhelp markdown
-      uses: actions/upload-artifact@v2
-      with:
-        name: qhelp-markdown
-        path: go/qhelp-out/**/*.md
-
-    - name: Test
-      run: |
-        cd go
-        env PATH=$PATH:$HOME/codeql make test
-
-  test-mac:
-    name: Test MacOS
-    runs-on: macOS-latest
-    steps:
-    - name: Set up Go 1.18.1
-      uses: actions/setup-go@v3
-      with:
-        go-version: 1.18.1
-      id: go
-
-    - name: Set up CodeQL CLI
-      run: |
-        echo "Removing old CodeQL Directory..."
-        rm -rf $HOME/codeql
-        echo "Done"
-        cd $HOME
-        echo "Downloading CodeQL CLI..."
-        LATEST=$(gh release list --repo https://github.com/github/codeql-cli-binaries | cut -f 1 | sort --version-sort | grep -v beta | tail -1)
-        gh release download --repo https://github.com/github/codeql-cli-binaries --pattern codeql-osx64.zip "$LATEST"
-        echo "Done"
-        echo "Unpacking CodeQL CLI..."
-        unzip -q codeql-osx64.zip
-        rm -f codeql-osx64.zip
-        echo "Done"
-      env:
-        GITHUB_TOKEN: ${{ github.token }}
-
-    - name: Check out code
-      uses: actions/checkout@v2
-
-    - name: Enable problem matchers in repository
-      shell: bash
-      run: 'find .github/problem-matchers -name \*.json -exec echo "::add-matcher::{}" \;'
-
-    - name: Build
-      run: |
-        cd go
-        env PATH=$PATH:$HOME/codeql make
-
-    - name: Test
-      run: |
-        cd go
-        env PATH=$PATH:$HOME/codeql make test
-
-  test-win:
-    name: Test Windows
-    runs-on: windows-2019
-    steps:
-    - name: Set up Go 1.18.1
-      uses: actions/setup-go@v3
-      with:
-        go-version: 1.18.1
-      id: go
-
-    - name: Set up CodeQL CLI
-      run: |
-        echo "Removing old CodeQL Directory..."
-        rm -rf $HOME/codeql
-        echo "Done"
-        cd "$HOME"
-        echo "Downloading CodeQL CLI..."
-        LATEST=$(gh release list --repo https://github.com/github/codeql-cli-binaries | cut -f 1 | sort --version-sort | grep -v beta | tail -1)
-        gh release download --repo https://github.com/github/codeql-cli-binaries --pattern codeql-win64.zip "$LATEST"
-        echo "Done"
-        echo "Unpacking CodeQL CLI..."
-        unzip -q -o codeql-win64.zip
-        unzip -q -o codeql-win64.zip codeql/codeql.exe
-        rm -f codeql-win64.zip
-        echo "Done"
-      env:
-        GITHUB_TOKEN: ${{ github.token }}
-      shell:
-        bash
-
-    - name: Check out code
-      uses: actions/checkout@v2
-
-    - name: Enable problem matchers in repository
-      shell: bash
-      run: 'find .github/problem-matchers -name \*.json -exec echo "::add-matcher::{}" \;'
-
-    - name: Build
-      run: |
-        $Env:Path += ";$HOME\codeql"
-        cd go
-        make
-
-    - name: Test
-      run: |
-        $Env:Path += ";$HOME\codeql"
-        cd go
-        make test

.github/workflows/js-ml-tests.yml

@@ -1,76 +0,0 @@
-name: JS ML-powered queries tests
-
-on:
-  push:
-    paths:
-      - "javascript/ql/experimental/adaptivethreatmodeling/**"
-      - .github/workflows/js-ml-tests.yml
-    branches:
-      - main
-      - "rc/*"
-  pull_request:
-    paths:
-      - "javascript/ql/experimental/adaptivethreatmodeling/**"
-      - .github/workflows/js-ml-tests.yml
-
-defaults:
-  run:
-    working-directory: javascript/ql/experimental/adaptivethreatmodeling
-
-jobs:
-  qlformat:
-    name: Check QL formatting
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-
-      - uses: ./.github/actions/fetch-codeql
-
-      - name: Check QL formatting
-        run: |
-          find . "(" -name "*.ql" -or -name "*.qll" ")" -print0 | \
-            xargs -0 codeql query format --check-only
-
-  qlcompile:
-    name: Check QL compilation
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-
-      - uses: ./.github/actions/fetch-codeql
-
-      - name: Install pack dependencies
-        run: |
-          for pack in modelbuilding src; do
-            codeql pack install --mode verify -- "${pack}"
-          done
-
-      - name: Check QL compilation
-        run: |
-          codeql query compile \
-            --check-only \
-            --ram 5120 \
-            --additional-packs "${{ github.workspace }}" \
-            --threads=0 \
-            -- \
-            lib modelbuilding src
-
-  qltest:
-    name: Run QL tests
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-
-      - uses: ./.github/actions/fetch-codeql
-
-      - name: Install pack dependencies
-        run: codeql pack install -- test
-
-      - name: Run QL tests
-        run: |
-          codeql test run \
-            --threads=0 \
-            --ram 5120 \
-            --additional-packs "${{ github.workspace }}" \
-            -- \
-            test

.github/workflows/labeler.yml

@@ -1,11 +0,0 @@
-name: "Pull Request Labeler"
-on:
-- pull_request_target
-
-jobs:
-  triage:
-    runs-on: ubuntu-latest
-    steps:
-    - uses: actions/labeler@v4
-      with:
-        repo-token: "${{ secrets.GITHUB_TOKEN }}"

.github/workflows/mad_modelDiff.yml

@@ -1,103 +0,0 @@
-name: Models as Data - Diff
-
-on:
-  workflow_dispatch:
-    inputs:
-      projects:
-        description: "The projects to generate models for"
-        required: true
-        default: '["netty/netty"]'
-  pull_request:
-    branches:
-      - main
-    paths:
-      - "java/ql/src/utils/model-generator/**/*.*"
-      - ".github/workflows/mad_modelDiff.yml"
-
-permissions:
-  contents: read
-
-jobs:
-  model-diff:
-    name: Model Difference
-    runs-on: ubuntu-latest
-    if: github.repository == 'github/codeql'
-    strategy:
-      matrix:
-        slug: ${{fromJson(github.event.inputs.projects || '["apache/commons-codec", "apache/commons-io", "apache/commons-beanutils", "apache/commons-logging", "apache/commons-fileupload", "apache/commons-lang", "apache/commons-validator", "apache/commons-csv", "apache/dubbo"]' )}}
-    steps:
-      - name: Clone github/codeql from PR
-        uses: actions/checkout@v3
-        if: github.event.pull_request
-        with:
-          path: codeql-pr
-      - name: Clone github/codeql from main
-        uses: actions/checkout@v3
-        with:
-          path: codeql-main
-          ref: main
-      - uses: ./codeql-main/.github/actions/fetch-codeql
-      - name: Download database
-        env:
-          SLUG: ${{ matrix.slug }}
-        run: |
-          set -x
-          mkdir lib-dbs
-          SHORTNAME=${SLUG//[^a-zA-Z0-9_]/}
-          projectId=`curl -s https://lgtm.com/api/v1.0/projects/g/${SLUG} | jq .id`
-          curl -L "https://lgtm.com/api/v1.0/snapshots/$projectId/java" -o "$SHORTNAME.zip"
-          unzip -q -d "${SHORTNAME}-db" "${SHORTNAME}.zip"
-          mkdir "lib-dbs/$SHORTNAME/"
-          mv "${SHORTNAME}-db/"$(ls -1 "${SHORTNAME}"-db)/* "lib-dbs/${SHORTNAME}/"
-      - name: Generate Models (PR and main)
-        run: |
-          set -x
-          mkdir tmp-models
-          MODELS=`pwd`/tmp-models
-          DATABASES=`pwd`/lib-dbs
-
-          analyzeDatabaseWithCheckout() {
-            QL_VARIANT=$1
-            DATABASE=$2
-            cd codeql-$QL_VARIANT
-            SHORTNAME=`basename $DATABASE`
-            python java/ql/src/utils/model-generator/GenerateFlowModel.py $DATABASE $MODELS/${SHORTNAME}.qll
-            mv $MODELS/${SHORTNAME}.qll $MODELS/${SHORTNAME}Generated_${QL_VARIANT}.qll
-            cd ..
-          }
-
-          for d in $DATABASES/*/ ; do
-            ls -1 "$d"
-
-            analyzeDatabaseWithCheckout "main" $d
-            if [[ "$GITHUB_EVENT_NAME" == "pull_request" ]]
-            then
-              analyzeDatabaseWithCheckout "pr" $d
-            fi
-          done
-      - name: Install diff2html
-        if: github.event.pull_request
-        run: |
-          npm install -g diff2html-cli
-      - name: Generate Model Diff
-        if: github.event.pull_request
-        run: |
-          set -x
-          MODELS=`pwd`/tmp-models
-          ls -1 tmp-models/
-          for m in $MODELS/*_main.qll ; do
-            t="${m/main/"pr"}"
-            basename=`basename $m`
-            name="diff_${basename/_main.qll/""}"
-            (diff -w -u $m $t | diff2html -i stdin -F $MODELS/$name.html) || true
-          done
-      - uses: actions/upload-artifact@v3
-        with:
-          name: models
-          path: tmp-models/*.qll
-          retention-days: 20
-      - uses: actions/upload-artifact@v3
-        with:
-          name: diffs
-          path: tmp-models/*.html
-          retention-days: 20

.github/workflows/mad_regenerate-models.yml

@@ -1,62 +0,0 @@
-name: Regenerate framework models
-
-on:
-  workflow_dispatch:
-  schedule:
-    - cron: "30 2 * * *"
-  pull_request:
-    branches:
-      - main
-    paths:
-      - ".github/workflows/mad_regenerate-models.yml"
-
-jobs:
-  regenerate-models:
-    runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        # placeholder required for each axis, excluded below, replaced by the actual combinations (see include)
-        slug: ["placeholder"]
-        ref: ["placeholder"]
-        include:
-          - slug: "apache/commons-io"
-            ref: "8985de8fe74f6622a419b37a6eed0dbc484dc128"
-        exclude:
-          - slug: "placeholder"
-            ref: "placeholder"
-    steps:
-      - name: Clone self (github/codeql)
-        uses: actions/checkout@v3
-      - name: Setup CodeQL binaries
-        uses: ./.github/actions/fetch-codeql
-      - name: Clone repositories
-        uses: actions/checkout@v3
-        with:
-          path: repos/${{ matrix.ref }}
-          ref: ${{ matrix.ref }}
-          repository: ${{ matrix.slug }}
-      - name: Build database
-        env:
-          SLUG: ${{ matrix.slug }}
-          REF: ${{ matrix.ref }}
-        run: |
-          mkdir dbs
-          cd repos/${REF}
-          SHORTNAME=${SLUG//[^a-zA-Z0-9_]/}
-          codeql database create --language=java ../../dbs/${SHORTNAME}
-      - name: Regenerate models in-place
-        env:
-          SLUG: ${{ matrix.slug }}
-        run: |
-          SHORTNAME=${SLUG//[^a-zA-Z0-9_]/}
-          java/ql/src/utils/model-generator/RegenerateModels.py "${SLUG}" dbs/${SHORTNAME}
-      - name: Stage changes
-        run: |
-          find java -name "*.qll" -print0 | xargs -0 git add
-          git status
-          git diff --cached > models.patch
-      - uses: actions/upload-artifact@v3
-        with:
-          name: patch
-          path: models.patch
-          retention-days: 7

.github/workflows/post-pr-comment.yml

@@ -1,74 +0,0 @@
-# This workflow is the second part of the process described in
-# .github/workflows/qhelp-pr-preview.yml
-# See that file for more info.
-
-name: Post PR comment
-on:
-  workflow_run:
-    workflows: [Render QHelp changes]
-    types:
-      - completed
-
-permissions:
-  pull-requests: write
-  actions: read
-
-jobs:
-  post_comment:
-    runs-on: ubuntu-latest
-    steps:
-      - name: Download artifact
-        run: gh run download "${WORKFLOW_RUN_ID}" --repo "${GITHUB_REPOSITORY}" --name "comment"
-        env:
-          GITHUB_TOKEN: ${{ github.token }}
-          WORKFLOW_RUN_ID: ${{ github.event.workflow_run.id }}
-
-      - name: Check that PR SHA matches workflow SHA
-        run: |
-          PR="$(grep -o '^[0-9]\+$' pr_number.txt)"
-          PR_HEAD_SHA="$(gh api "/repos/${GITHUB_REPOSITORY}/pulls/${PR}" --jq .head.sha)"
-          # Check that the pull-request head SHA matches the head SHA of the workflow run
-          if [ "${WORKFLOW_RUN_HEAD_SHA}" != "${PR_HEAD_SHA}" ]; then
-            echo "PR head SHA ${PR_HEAD_SHA} does not match workflow_run event SHA ${WORKFLOW_RUN_HEAD_SHA}. Stopping." 1>&2
-            exit 1
-          fi
-        env:
-          GITHUB_TOKEN: ${{ github.token }}
-          WORKFLOW_RUN_HEAD_SHA: ${{ github.event.workflow_run.head_commit.id }}
-
-      - name: Create or update comment
-        run: |
-          COMMENT_PREFIX="QHelp previews"
-          COMMENT_AUTHOR="github-actions[bot]"
-          PR_NUMBER="$(grep -o '^[0-9]\+$' pr_number.txt)"
-
-          # If there is no existing comment, comment_id.txt will contain just a
-          # newline (due to jq & gh behaviour). This will cause grep to fail, so
-          # we catch that.
-          RAW_COMMENT_ID=$(grep -o '^[0-9]\+$' comment_id.txt || true)
-
-          if [ $RAW_COMMENT_ID ]
-          then
-            # Fetch existing comment, and validate:
-            # - comment belongs to the PR with number $PR_NUMBER
-            # - comment starts with the expected prefix ("QHelp previews")
-            # - comment author is github-actions[bot]
-            FILTER='select(.issue_url | endswith($repo+"/issues/"+$pr))
-                  | select(.body | startswith($prefix))
-                  | select(.user.login == $author)
-                  | .id'
-            COMMENT_ID=$(gh api "repos/${GITHUB_REPOSITORY}/issues/comments/${RAW_COMMENT_ID}" | jq --arg repo "${GITHUB_REPOSITORY}" --arg pr "${PR_NUMBER}" --arg prefix "${COMMENT_PREFIX}" --arg author "${COMMENT_AUTHOR}" "${FILTER}")
-            if [ $COMMENT_ID ]
-            then
-              # Update existing comment
-              jq --rawfile body comment_body.txt '{"body":$body}' -n | gh api "repos/${GITHUB_REPOSITORY}/issues/comments/${COMMENT_ID}" -X PATCH --input -
-            else
-              echo "Comment ${RAW_COMMENT_ID} did not pass validations: not editing." >&2
-              exit 1
-            fi
-          else
-            # Create new comment
-            jq --rawfile body comment_body.txt '{"body":$body}' -n | gh api "repos/${GITHUB_REPOSITORY}/issues/${PR_NUMBER}/comments" -X POST --input -
-          fi
-        env:
-          GITHUB_TOKEN: ${{ github.token }}

.github/workflows/qhelp-pr-preview.yml

@@ -1,102 +0,0 @@
-# This workflow checks for any changes in .qhelp files in pull requests.
-# For any changed files, it renders them to markdown in a file called `comment_body.txt`.
-# It then checks if there's an existing comment on the pull request generated by
-# this workflow, and writes the comment ID to `comment_id.txt`.
-# It also writes the PR number to `pr_number.txt`.
-# These three files are uploaded as an artifact.
-
-# When this workflow completes, the workflow "Post PR comment" runs.
-# It downloads the artifact and adds a comment to the PR with the rendered
-# QHelp.
-
-# The task is split like this because creating PR comments requires extra
-# permissions that we don't want to expose to PRs from external forks.
-
-# For more info see:
-# https://docs.github.com/en/actions/using-workflows/events-that-trigger-workflows#workflow_run
-# https://docs.github.com/en/actions/security-guides/automatic-token-authentication#permissions-for-the-github_token
-name: Render QHelp changes
-
-permissions:
-  contents: read
-  pull-requests: read
-
-on:
-  pull_request:
-    branches:
-      - main
-      - "rc/*"
-    paths:
-      - "ruby/**/*.qhelp"
-
-jobs:
-  qhelp:
-    runs-on: ubuntu-latest
-    steps:
-      - run: echo "${PR_NUMBER}" > pr_number.txt
-        env:
-          PR_NUMBER: ${{ github.event.number }}
-      - uses: actions/upload-artifact@v3
-        with:
-          name: comment
-          path: pr_number.txt
-          if-no-files-found: error
-          retention-days: 1
-
-      - uses: actions/checkout@v3
-        with:
-          fetch-depth: 2
-          persist-credentials: false
-      - uses: ./.github/actions/fetch-codeql
-      - name: Determine changed files
-        id: changes
-        run: |
-          (git diff -z --name-only --diff-filter=ACMRT HEAD~1 HEAD | grep -z '.qhelp$' | grep -z -v '.inc.qhelp';
-           git diff -z --name-only --diff-filter=ACMRT HEAD~1 HEAD | grep -z '.inc.qhelp$' | xargs --null -rn1 basename | xargs --null -rn1 git grep -z -l) |
-           grep -z '.qhelp$' | grep -z -v '^-' | sort -z -u > "${RUNNER_TEMP}/paths.txt"
-
-      - name: QHelp preview
-        run: |
-          EXIT_CODE=0
-          echo "QHelp previews:" > comment_body.txt
-          while read -r -d $'\0' path; do
-            if [ ! -f "${path}" ]; then
-               exit 1
-            fi
-            echo "<details> <summary>${path}</summary>"
-            echo
-            codeql generate query-help --format=markdown -- "./${path}" 2> errors.txt || EXIT_CODE="$?"
-            if [ -s errors.txt ]; then
-               echo "# errors/warnings:"
-               echo '```'
-               cat errors.txt
-               cat errors.txt 1>&2
-               echo '```'
-            fi
-            echo "</details>"
-          done < "${RUNNER_TEMP}/paths.txt" >> comment_body.txt
-          exit "${EXIT_CODE}"
-
-      - if: always()
-        uses: actions/upload-artifact@v3
-        with:
-          name: comment
-          path: comment_body.txt
-          if-no-files-found: error
-          retention-days: 1
-
-      - name: Save ID of existing QHelp comment (if it exists)
-        run: |
-          # Find the latest comment starting with "QHelp previews"
-          COMMENT_PREFIX="QHelp previews"
-          gh api "repos/${GITHUB_REPOSITORY}/issues/${PR_NUMBER}/comments" --paginate | jq --arg prefix "${COMMENT_PREFIX}" '[.[] | select(.body|startswith($prefix)) | .id] | max' > comment_id.txt
-        env:
-          GITHUB_TOKEN: ${{ github.token }}
-          PR_NUMBER: ${{ github.event.number }}
-
-      - uses: actions/upload-artifact@v3
-        with:
-          name: comment
-          path: comment_id.txt
-          if-no-files-found: error
-          retention-days: 1

.github/workflows/ql-for-ql-build.yml

@@ -1,203 +0,0 @@
-name: Run QL for QL
-
-on:
-  push:
-    branches: [main]
-  pull_request:
-    branches: [main]
-
-env:
-  CARGO_TERM_COLOR: always
-
-jobs:
-  queries:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-      - name: Find codeql
-        id: find-codeql
-        uses: github/codeql-action/init@aa93aea877e5fb8841bcb1193f672abf6e9f2980
-        with:
-          languages: javascript # does not matter
-          tools: latest
-      - name: Get CodeQL version
-        id: get-codeql-version
-        run: |
-          echo "::set-output name=version::$("${CODEQL}" --version | head -n 1 | rev | cut -d " " -f 1 | rev)"
-        shell: bash
-        env:
-          CODEQL: ${{ steps.find-codeql.outputs.codeql-path }}
-      - name: Cache queries
-        id: cache-queries
-        uses: actions/cache@v3
-        with:
-          path: ${{ runner.temp }}/query-pack.zip
-          key: queries-${{ hashFiles('ql/**/*.ql*') }}-${{ hashFiles('ql/**/qlpack.yml') }}-${{ hashFiles('ql/ql/src/ql.dbscheme*') }}-${{ steps.get-codeql-version.outputs.version }}
-      - name: Build query pack
-        if: steps.cache-queries.outputs.cache-hit != 'true'
-        run: |
-          cd ql/ql/src
-          "${CODEQL}" pack create
-          cd .codeql/pack/codeql/ql/0.0.0
-          zip "${PACKZIP}" -r .
-        env:
-          CODEQL: ${{ steps.find-codeql.outputs.codeql-path }}
-          PACKZIP: ${{ runner.temp }}/query-pack.zip
-      - name: Upload query pack
-        uses: actions/upload-artifact@v3
-        with:
-          name: query-pack-zip
-          path: ${{ runner.temp }}/query-pack.zip
-
-  extractors:
-    strategy:
-      fail-fast: false
-
-    runs-on: ubuntu-latest
-
-    steps:
-      - uses: actions/checkout@v3
-      - name: Cache entire extractor
-        id: cache-extractor
-        uses: actions/cache@v3
-        with:
-          path: |
-            ql/target/release/ql-autobuilder
-            ql/target/release/ql-autobuilder.exe
-            ql/target/release/ql-extractor
-            ql/target/release/ql-extractor.exe
-          key: ${{ runner.os }}-extractor-${{ hashFiles('ql/**/Cargo.lock') }}-${{ hashFiles('ql/**/*.rs') }}
-      - name: Cache cargo
-        if: steps.cache-extractor.outputs.cache-hit != 'true'
-        uses: actions/cache@v3
-        with:
-          path: |
-            ~/.cargo/registry
-            ~/.cargo/git
-            ql/target
-          key: ${{ runner.os }}-rust-cargo-${{ hashFiles('ql/**/Cargo.lock') }}
-      - name: Check formatting
-        if: steps.cache-extractor.outputs.cache-hit != 'true'
-        run: cd ql; cargo fmt --all -- --check
-      - name: Build
-        if: steps.cache-extractor.outputs.cache-hit != 'true'
-        run: cd ql; cargo build --verbose
-      - name: Run tests
-        if: steps.cache-extractor.outputs.cache-hit != 'true'
-        run: cd ql; cargo test --verbose
-      - name: Release build
-        if: steps.cache-extractor.outputs.cache-hit != 'true'
-        run: cd ql; cargo build --release
-      - name: Generate dbscheme
-        if: steps.cache-extractor.outputs.cache-hit != 'true'
-        run: ql/target/release/ql-generator --dbscheme ql/ql/src/ql.dbscheme --library ql/ql/src/codeql_ql/ast/internal/TreeSitter.qll
-      - uses: actions/upload-artifact@v3
-        with:
-          name: extractor-ubuntu-latest
-          path: |
-            ql/target/release/ql-autobuilder
-            ql/target/release/ql-autobuilder.exe
-            ql/target/release/ql-extractor
-            ql/target/release/ql-extractor.exe
-          retention-days: 1
-  package:
-    runs-on: ubuntu-latest
-
-    needs:
-      - extractors
-      - queries
-
-    steps:
-      - uses: actions/checkout@v3
-      - uses: actions/download-artifact@v3
-        with:
-          name: query-pack-zip
-          path: query-pack-zip
-      - uses: actions/download-artifact@v3
-        with:
-          name: extractor-ubuntu-latest
-          path: linux64
-      - run: |
-          unzip query-pack-zip/*.zip -d pack
-          cp -r ql/codeql-extractor.yml ql/tools ql/ql/src/ql.dbscheme.stats pack/
-          mkdir -p pack/tools/linux64
-          if [[ -f linux64/ql-autobuilder ]]; then
-            cp linux64/ql-autobuilder pack/tools/linux64/autobuilder
-            chmod +x pack/tools/linux64/autobuilder
-          fi
-          if [[ -f linux64/ql-extractor ]]; then
-            cp linux64/ql-extractor pack/tools/linux64/extractor
-            chmod +x pack/tools/linux64/extractor
-          fi
-          cd pack
-          zip -rq ../codeql-ql.zip .
-      - uses: actions/upload-artifact@v3
-        with:
-          name: codeql-ql-pack
-          path: codeql-ql.zip
-          retention-days: 1
-  analyze:
-    runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        folder: [cpp, csharp, java, javascript, python, ql, ruby, swift, go]
-
-    needs:
-      - package
-
-    steps:
-      - name: Download pack
-        uses: actions/download-artifact@v3
-        with:
-          name: codeql-ql-pack
-          path: ${{ runner.temp }}/codeql-ql-pack-artifact
-
-      - name: Prepare pack
-        run: |
-          unzip "${PACK_ARTIFACT}/*.zip" -d "${PACK}"
-        env:
-          PACK_ARTIFACT: ${{ runner.temp }}/codeql-ql-pack-artifact
-          PACK: ${{ runner.temp }}/pack
-      - name: Hack codeql-action options
-        run: |
-          JSON=$(jq -nc --arg pack "${PACK}" '.database."run-queries"=["--search-path", $pack] | .resolve.queries=["--search-path", $pack] | .resolve.extractor=["--search-path", $pack] | .database.init=["--search-path", $pack]')
-          echo "CODEQL_ACTION_EXTRA_OPTIONS=${JSON}" >> ${GITHUB_ENV}
-        env:
-          PACK: ${{ runner.temp }}/pack
-
-      - name: Checkout repository
-        uses: actions/checkout@v3
-      - name: Create CodeQL config file
-        run: |
-          echo "paths:" > ${CONF}
-          echo "  - ${FOLDER}" >> ${CONF}
-          echo "paths-ignore:" >> ${CONF}
-          echo "  - ql/ql/test" >> ${CONF} 
-          echo "disable-default-queries: true" >> ${CONF}
-          echo "packs:" >> ${CONF}
-          echo "  - codeql/ql" >> ${CONF}
-          echo "Config file: "
-          cat ${CONF}
-        env: 
-          CONF: ./ql-for-ql-config.yml
-          FOLDER: ${{ matrix.folder }}
-      - name: Initialize CodeQL
-        uses: github/codeql-action/init@aa93aea877e5fb8841bcb1193f672abf6e9f2980
-        with:
-          languages: ql
-          db-location: ${{ runner.temp }}/db
-          config-file: ./ql-for-ql-config.yml
-          tools: latest
-
-      - name: Perform CodeQL Analysis
-        uses: github/codeql-action/analyze@aa93aea877e5fb8841bcb1193f672abf6e9f2980
-        with: 
-          category: "ql-for-ql-${{ matrix.folder }}"
-      - name: Copy sarif file to CWD
-        run: cp ../results/ql.sarif ./${{ matrix.folder }}.sarif
-      - name: Sarif as artifact
-        uses: actions/upload-artifact@v3
-        with:
-          name: ${{ matrix.folder }}.sarif
-          path: ${{ matrix.folder }}.sarif
-

.github/workflows/ql-for-ql-dataset_measure.yml

@@ -1,83 +0,0 @@
-name: Collect database stats for QL for QL
-
-on:
-  push:
-    branches: [main]
-    paths:
-      - ql/ql/src/ql.dbscheme
-  pull_request:
-    branches: [main]
-    paths:
-      - ql/ql/src/ql.dbscheme
-  workflow_dispatch:
-
-jobs:
-  measure:
-    env:
-      CODEQL_THREADS: 4 # TODO: remove this once it's set by the CLI
-    strategy:
-      matrix:
-        repo:
-          - github/codeql
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-
-      - name: Find codeql
-        id: find-codeql
-        uses: github/codeql-action/init@aa93aea877e5fb8841bcb1193f672abf6e9f2980
-        with:
-          languages: javascript # does not matter
-      - uses: actions/cache@v3
-        with:
-          path: |
-            ~/.cargo/registry
-            ~/.cargo/git
-            ql/target
-          key: ${{ runner.os }}-qltest-cargo-${{ hashFiles('ql/**/Cargo.lock') }}
-      - name: Build Extractor
-        run: cd ql; env "PATH=$PATH:`dirname ${CODEQL}`" ./create-extractor-pack.sh
-        env:
-          CODEQL: ${{ steps.find-codeql.outputs.codeql-path }}
-      - name: Checkout ${{ matrix.repo }}
-        uses: actions/checkout@v3
-        with:
-          repository: ${{ matrix.repo }}
-          path: ${{ github.workspace }}/repo
-      - name: Create database
-        run: |
-          "${CODEQL}" database create \
-            --search-path "ql/extractor-pack" \
-            --threads 4 \
-            --language ql --source-root "${{ github.workspace }}/repo" \
-            "${{ runner.temp }}/database"
-        env:
-          CODEQL: ${{ steps.find-codeql.outputs.codeql-path }}
-      - name: Measure database
-        run: |
-          mkdir -p "stats/${{ matrix.repo }}"
-          "${CODEQL}" dataset measure --threads 4 --output "stats/${{ matrix.repo }}/stats.xml" "${{ runner.temp }}/database/db-ql"
-        env:
-          CODEQL: ${{ steps.find-codeql.outputs.codeql-path }}
-      - uses: actions/upload-artifact@v3
-        with:
-          name: measurements
-          path: stats
-          retention-days: 1
-
-  merge:
-    runs-on: ubuntu-latest
-    needs: measure
-    steps:
-      - uses: actions/checkout@v3
-      - uses: actions/download-artifact@v3
-        with:
-          name: measurements
-          path: stats
-      - run: |
-          python -m pip install --user lxml
-          find stats -name 'stats.xml' -print0 | sort -z | xargs -0 python ruby/scripts/merge_stats.py --output ql/ql/src/ql.dbscheme.stats --normalise ql_tokeninfo
-      - uses: actions/upload-artifact@v3
-        with:
-          name: ql.dbscheme.stats
-          path: ql/ql/src/ql.dbscheme.stats

.github/workflows/ql-for-ql-tests.yml

@@ -1,52 +0,0 @@
-name: Run QL for QL Tests
-
-on:
-  push:
-    branches: [main]
-    paths:
-      - "ql/**"
-  pull_request:
-    branches: [main]
-    paths:
-      - "ql/**"
-
-env:
-  CARGO_TERM_COLOR: always
-
-jobs:
-  qltest:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-      - name: Find codeql
-        id: find-codeql
-        uses: github/codeql-action/init@aa93aea877e5fb8841bcb1193f672abf6e9f2980
-        with:
-          languages: javascript # does not matter
-      - uses: actions/cache@v3
-        with:
-          path: |
-            ~/.cargo/registry
-            ~/.cargo/git
-            ql/target
-          key: ${{ runner.os }}-qltest-cargo-${{ hashFiles('ql/**/Cargo.lock') }}
-      - name: Build extractor
-        run: |
-          cd ql;
-          codeqlpath=$(dirname ${{ steps.find-codeql.outputs.codeql-path }});
-          env "PATH=$PATH:$codeqlpath" ./create-extractor-pack.sh
-      - name: Run QL tests
-        run: |
-          "${CODEQL}" test run --check-databases --check-unused-labels --check-repeated-labels --check-redefined-labels --check-use-before-definition --search-path "${{ github.workspace }}/ql/extractor-pack" --consistency-queries ql/ql/consistency-queries ql/ql/test
-        env:
-          CODEQL: ${{ steps.find-codeql.outputs.codeql-path }}
-      - name: Check QL formatting
-        run: |
-          find ql/ql "(" -name "*.ql" -or -name "*.qll" ")" -print0 | xargs -0 "${CODEQL}" query format --check-only
-        env:
-          CODEQL: ${{ steps.find-codeql.outputs.codeql-path }}
-      - name: Check QL compilation
-        run: |
-          "${CODEQL}" query compile --check-only --threads=4 --warnings=error --search-path "${{ github.workspace }}/ql/extractor-pack" "ql/ql/src" "ql/ql/examples"
-        env:
-          CODEQL: ${{ steps.find-codeql.outputs.codeql-path }}

.github/workflows/query-list.yml

@@ -1,39 +0,0 @@
-name: Build code scanning query list
-
-on:
-  push:
-    branches:
-     - main
-     - 'rc/**'
-  pull_request:
-    paths:
-      - '.github/workflows/query-list.yml'
-      - 'misc/scripts/generate-code-scanning-query-list.py'
-
-jobs:
-  build:
-
-    runs-on: ubuntu-latest
-
-    steps:
-    - name: Clone self (github/codeql)
-      uses: actions/checkout@v3
-      with:
-        path: codeql 
-    - name: Set up Python 3.8
-      uses: actions/setup-python@v3
-      with:
-        python-version: 3.8
-    - name: Download CodeQL CLI
-      # Look under the `codeql` directory, as this is where we checked out the `github/codeql` repo
-      uses: ./codeql/.github/actions/fetch-codeql
-    - name: Unzip CodeQL CLI
-      run: unzip -d codeql-cli codeql-linux64.zip
-    - name: Build code scanning query list
-      run: |
-        python codeql/misc/scripts/generate-code-scanning-query-list.py > code-scanning-query-list.csv
-    - name: Upload code scanning query list
-      uses: actions/upload-artifact@v3
-      with:
-        name: code-scanning-query-list
-        path: code-scanning-query-list.csv

.github/workflows/ruby-build.yml

@@ -1,224 +0,0 @@
-name: "Ruby: Build"
-
-on:
-  push:
-    paths:
-      - "ruby/**"
-      - .github/workflows/ruby-build.yml
-    branches:
-      - main
-      - "rc/*"
-  pull_request:
-    paths:
-      - "ruby/**"
-      - .github/workflows/ruby-build.yml
-    branches:
-      - main
-      - "rc/*"
-  workflow_dispatch:
-    inputs:
-      tag:
-        description: "Version tag to create"
-        required: false
-
-env:
-  CARGO_TERM_COLOR: always
-
-defaults:
-  run:
-    working-directory: ruby
-
-jobs:
-  build:
-    strategy:
-      fail-fast: false
-      matrix:
-        os: [ubuntu-latest, macos-latest, windows-latest]
-
-    runs-on: ${{ matrix.os }}
-
-    steps:
-      - uses: actions/checkout@v3
-      - name: Install GNU tar
-        if: runner.os == 'macOS'
-        run: |
-          brew install gnu-tar
-          echo "/usr/local/opt/gnu-tar/libexec/gnubin" >> $GITHUB_PATH
-      - uses: actions/cache@v3
-        with:
-          path: |
-            ~/.cargo/registry
-            ~/.cargo/git
-            ruby/target
-          key: ${{ runner.os }}-ruby-rust-cargo-${{ hashFiles('ruby/rust-toolchain.toml', 'ruby/**/Cargo.lock') }}
-      - name: Check formatting
-        run: cargo fmt --all -- --check
-      - name: Build
-        run: cargo build --verbose
-      - name: Run tests
-        run: cargo test --verbose
-      - name: Release build
-        run: cargo build --release
-      - name: Generate dbscheme
-        if: ${{ matrix.os == 'ubuntu-latest' }}
-        run: target/release/ruby-generator --dbscheme ql/lib/ruby.dbscheme --library ql/lib/codeql/ruby/ast/internal/TreeSitter.qll
-      - uses: actions/upload-artifact@v3
-        if: ${{ matrix.os == 'ubuntu-latest' }}
-        with:
-          name: ruby.dbscheme
-          path: ruby/ql/lib/ruby.dbscheme
-      - uses: actions/upload-artifact@v3
-        if: ${{ matrix.os == 'ubuntu-latest' }}
-        with:
-          name: TreeSitter.qll
-          path: ruby/ql/lib/codeql/ruby/ast/internal/TreeSitter.qll
-      - uses: actions/upload-artifact@v3
-        with:
-          name: extractor-${{ matrix.os }}
-          path: |
-            ruby/target/release/ruby-autobuilder
-            ruby/target/release/ruby-autobuilder.exe
-            ruby/target/release/ruby-extractor
-            ruby/target/release/ruby-extractor.exe
-          retention-days: 1
-  compile-queries:
-    runs-on: ubuntu-latest
-    env:
-      CODEQL_THREADS: 4 # TODO: remove this once it's set by the CLI
-    steps:
-      - uses: actions/checkout@v3
-      - name: Fetch CodeQL
-        run: |
-          LATEST=$(gh release list --repo https://github.com/github/codeql-cli-binaries | cut -f 1 | grep -v beta | sort --version-sort | tail -1)
-          gh release download --repo https://github.com/github/codeql-cli-binaries --pattern codeql-linux64.zip "$LATEST"
-          unzip -q codeql-linux64.zip
-        env:
-          GITHUB_TOKEN: ${{ github.token }}
-      - name: Build Query Pack
-        run: |
-          codeql/codeql pack create ql/lib --output target/packs
-          codeql/codeql pack install ql/src
-          codeql/codeql pack create ql/src --output target/packs
-          PACK_FOLDER=$(readlink -f target/packs/codeql/ruby-queries/*)
-          codeql/codeql generate query-help --format=sarifv2.1.0 --output="${PACK_FOLDER}/rules.sarif" ql/src
-          (cd ql/src; find queries \( -name '*.qhelp' -o -name '*.rb' -o -name '*.erb' \) -exec bash -c 'mkdir -p "'"${PACK_FOLDER}"'/$(dirname "{}")"' \; -exec cp "{}" "${PACK_FOLDER}/{}" \;)
-      - uses: actions/upload-artifact@v3
-        with:
-          name: codeql-ruby-queries
-          path: |
-            ruby/target/packs/*
-          retention-days: 1
-
-  package:
-    runs-on: ubuntu-latest
-    needs: [build, compile-queries]
-    steps:
-      - uses: actions/checkout@v3
-      - uses: actions/download-artifact@v3
-        with:
-          name: ruby.dbscheme
-          path: ruby/ruby
-      - uses: actions/download-artifact@v3
-        with:
-          name: extractor-ubuntu-latest
-          path: ruby/linux64
-      - uses: actions/download-artifact@v3
-        with:
-          name: extractor-windows-latest
-          path: ruby/win64
-      - uses: actions/download-artifact@v3
-        with:
-          name: extractor-macos-latest
-          path: ruby/osx64
-      - run: |
-          mkdir -p ruby
-          cp -r codeql-extractor.yml tools ql/lib/ruby.dbscheme.stats ruby/
-          mkdir -p ruby/tools/{linux64,osx64,win64}
-          cp linux64/ruby-autobuilder ruby/tools/linux64/autobuilder
-          cp osx64/ruby-autobuilder ruby/tools/osx64/autobuilder
-          cp win64/ruby-autobuilder.exe ruby/tools/win64/autobuilder.exe
-          cp linux64/ruby-extractor ruby/tools/linux64/extractor
-          cp osx64/ruby-extractor ruby/tools/osx64/extractor
-          cp win64/ruby-extractor.exe ruby/tools/win64/extractor.exe
-          chmod +x ruby/tools/{linux64,osx64}/{autobuilder,extractor}
-          zip -rq codeql-ruby.zip ruby
-      - uses: actions/upload-artifact@v3
-        with:
-          name: codeql-ruby-pack
-          path: ruby/codeql-ruby.zip
-          retention-days: 1
-      - uses: actions/download-artifact@v3
-        with:
-          name: codeql-ruby-queries
-          path: ruby/qlpacks
-      - run: |
-          echo '{
-            "provide": [
-            "ruby/codeql-extractor.yml",
-            "qlpacks/*/*/*/qlpack.yml"
-            ]
-          }' > .codeqlmanifest.json
-          zip -rq codeql-ruby-bundle.zip .codeqlmanifest.json ruby qlpacks
-      - uses: actions/upload-artifact@v3
-        with:
-          name: codeql-ruby-bundle
-          path: ruby/codeql-ruby-bundle.zip
-          retention-days: 1
-
-  test:
-    defaults:
-      run:
-        working-directory: ${{ github.workspace }}
-    strategy:
-      fail-fast: false
-      matrix:
-        os: [ubuntu-latest, macos-latest, windows-latest]
-
-    runs-on: ${{ matrix.os }}
-    needs: [package]
-    steps:
-      - uses: actions/checkout@v3
-        with:
-          repository: Shopify/example-ruby-app
-          ref: 67a0decc5eb550f3a9228eda53925c3afd40dfe9
-      - name: Fetch CodeQL
-        shell: bash
-        run: |
-          LATEST=$(gh release list --repo https://github.com/github/codeql-cli-binaries | cut -f 1 | grep -v beta | sort --version-sort | tail -1)
-          gh release download --repo https://github.com/github/codeql-cli-binaries --pattern codeql.zip "$LATEST"
-          unzip -q codeql.zip
-        env:
-          GITHUB_TOKEN: ${{ github.token }}
-        working-directory: ${{ runner.temp }}
-      - name: Download Ruby bundle
-        uses: actions/download-artifact@v3
-        with:
-          name: codeql-ruby-bundle
-          path: ${{ runner.temp }}
-      - name: Unzip Ruby bundle
-        shell: bash
-        run: unzip -q -d "${{ runner.temp }}/ruby-bundle" "${{ runner.temp }}/codeql-ruby-bundle.zip"
-      - name: Prepare test files
-        shell: bash
-        run: |
-          echo "import ruby select count(File f)" > "test.ql"
-          echo "| 4 |" > "test.expected"
-          echo 'name: sample-tests
-          version: 0.0.0
-          dependencies:
-            codeql/ruby-all: 0.0.1
-          extractor: ruby
-          tests: .
-          ' > qlpack.yml
-      - name: Run QL test
-        shell: bash
-        run: |
-          "${{ runner.temp }}/codeql/codeql" test run --search-path "${{ runner.temp }}/ruby-bundle" --additional-packs "${{ runner.temp }}/ruby-bundle" .
-      - name: Create database
-        shell: bash
-        run: |
-          "${{ runner.temp }}/codeql/codeql" database create --search-path "${{ runner.temp }}/ruby-bundle" --language ruby --source-root . ../database
-      - name: Analyze database
-        shell: bash
-        run: |
-          "${{ runner.temp }}/codeql/codeql" database analyze --search-path "${{ runner.temp }}/ruby-bundle" --format=sarifv2.1.0 --output=out.sarif ../database ruby-code-scanning.qls

.github/workflows/ruby-dataset-measure.yml

@@ -1,73 +0,0 @@
-name: "Ruby: Collect database stats"
-
-on:
-  push:
-    branches:
-      - main
-      - "rc/*"
-    paths:
-      - ruby/ql/lib/ruby.dbscheme
-      - .github/workflows/ruby-dataset-measure.yml
-  pull_request:
-    branches:
-      - main
-      - "rc/*"
-    paths:
-      - ruby/ql/lib/ruby.dbscheme
-      - .github/workflows/ruby-dataset-measure.yml
-  workflow_dispatch:
-
-jobs:
-  measure:
-    env:
-      CODEQL_THREADS: 4 # TODO: remove this once it's set by the CLI
-    strategy:
-      fail-fast: false
-      matrix:
-        repo: [rails/rails, discourse/discourse, spree/spree, ruby/ruby]
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-
-      - uses: ./.github/actions/fetch-codeql
-
-      - uses: ./ruby/actions/create-extractor-pack
-
-      - name: Checkout ${{ matrix.repo }}
-        uses: actions/checkout@v3
-        with:
-          repository: ${{ matrix.repo }}
-          path: ${{ github.workspace }}/repo
-      - name: Create database
-        run: |
-          codeql database create \
-            --search-path "${{ github.workspace }}/ruby/extractor-pack" \
-            --threads 4 \
-            --language ruby --source-root "${{ github.workspace }}/repo" \
-            "${{ runner.temp }}/database"
-      - name: Measure database
-        run: |
-          mkdir -p "stats/${{ matrix.repo }}"
-          codeql dataset measure --threads 4 --output "stats/${{ matrix.repo }}/stats.xml" "${{ runner.temp }}/database/db-ruby"
-      - uses: actions/upload-artifact@v3
-        with:
-          name: measurements
-          path: stats
-          retention-days: 1
-
-  merge:
-    runs-on: ubuntu-latest
-    needs: measure
-    steps:
-      - uses: actions/checkout@v3
-      - uses: actions/download-artifact@v3
-        with:
-          name: measurements
-          path: stats
-      - run: |
-          python -m pip install --user lxml
-          find stats -name 'stats.xml' | sort | xargs python ruby/scripts/merge_stats.py --output ruby/ql/lib/ruby.dbscheme.stats --normalise ruby_tokeninfo
-      - uses: actions/upload-artifact@v3
-        with:
-          name: ruby.dbscheme.stats
-          path: ruby/ql/lib/ruby.dbscheme.stats

.github/workflows/ruby-qltest.yml

@@ -1,77 +0,0 @@
-name: "Ruby: Run QL Tests"
-
-on:
-  push:
-    paths:
-      - "ruby/**"
-      - .github/workflows/ruby-qltest.yml
-    branches:
-      - main
-      - "rc/*"
-  pull_request:
-    paths:
-      - "ruby/**"
-      - .github/workflows/ruby-qltest.yml
-    branches:
-      - main
-      - "rc/*"
-
-env:
-  CARGO_TERM_COLOR: always
-
-defaults:
-  run:
-    working-directory: ruby
-
-jobs:
-  qlformat:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-      - uses: ./.github/actions/fetch-codeql
-      - name: Check QL formatting
-        run: find ql "(" -name "*.ql" -or -name "*.qll" ")" -print0 | xargs -0 codeql query format --check-only
-  qlcompile:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-      - uses: ./.github/actions/fetch-codeql
-      - name: Check QL compilation
-        run: |
-          codeql query compile --check-only --threads=0 --ram 5000 --warnings=error "ql/src" "ql/examples"
-        env:
-          GITHUB_TOKEN: ${{ github.token }}
-  qlupgrade:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-      - uses: ./.github/actions/fetch-codeql
-      - name: Check DB upgrade scripts
-        run: |
-          echo >empty.trap
-          codeql dataset import -S ql/lib/upgrades/initial/ruby.dbscheme testdb empty.trap
-          codeql dataset upgrade testdb --additional-packs ql/lib
-          diff -q testdb/ruby.dbscheme ql/lib/ruby.dbscheme
-      - name: Check DB downgrade scripts
-        run: |
-          echo >empty.trap
-          rm -rf testdb; codeql dataset import -S ql/lib/ruby.dbscheme testdb empty.trap
-          codeql resolve upgrades --format=lines --allow-downgrades --additional-packs downgrades \
-           --dbscheme=ql/lib/ruby.dbscheme --target-dbscheme=downgrades/initial/ruby.dbscheme |
-           xargs codeql execute upgrades testdb
-          diff -q testdb/ruby.dbscheme downgrades/initial/ruby.dbscheme
-  qltest:
-    runs-on: ubuntu-latest
-    strategy:
-      fail-fast: false
-      matrix:
-        slice: ["1/2", "2/2"]
-    steps:
-      - uses: actions/checkout@v3
-      - uses: ./.github/actions/fetch-codeql
-      - uses: ./ruby/actions/create-extractor-pack
-      - name: Run QL tests
-        run: |
-          codeql test run --threads=0 --ram 5000 --slice ${{ matrix.slice }} --search-path "${{ github.workspace }}/ruby/extractor-pack" --check-databases --check-unused-labels --check-repeated-labels --check-redefined-labels --check-use-before-definition --consistency-queries ql/consistency-queries ql/test
-        env:
-          GITHUB_TOKEN: ${{ github.token }}

.github/workflows/swift-codegen.yml

@@ -1,32 +0,0 @@
-name: "Swift: Check code generation"
-
-on:
-  pull_request:
-    paths:
-      - "swift/**"
-      - .github/workflows/swift-codegen.yml
-    branches:
-      - main
-
-jobs:
-  codegen:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-      - uses: ./.github/actions/fetch-codeql
-      - uses: bazelbuild/setup-bazelisk@v2
-      - name: Run unit tests
-        run: |
-          bazel test //swift/codegen/test --test_output=errors
-      - name: Check that QL generated code was checked in
-        run: |
-          bazel run //swift/codegen
-          git add swift
-          git diff --exit-code --stat HEAD
-      - name: Generate C++ files
-        run: |
-          bazel run //swift/codegen:cppcodegen -- --cpp-output=$PWD/swift-generated-headers
-      - uses: actions/upload-artifact@v3
-        with:
-          name: swift-generated-headers
-          path: swift-generated-headers/*.h

.github/workflows/swift-qltest.yml

@@ -1,39 +0,0 @@
-name: "Swift: Run QL Tests"
-
-on:
-  pull_request:
-    paths:
-      - "swift/**"
-      - .github/workflows/swift-qltest.yml
-    branches:
-      - main
-defaults:
-  run:
-    working-directory: swift
-
-jobs:
-  qlformat:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-      - uses: ./.github/actions/fetch-codeql
-      - name: Check QL formatting
-        run: find ql "(" -name "*.ql" -or -name "*.qll" ")" -print0 | xargs -0 codeql query format --check-only
-  qltest:
-    runs-on: ${{ matrix.os }}
-    strategy:
-      fail-fast: false
-      matrix:
-        os : [ubuntu-20.04, macos-latest]
-    steps:
-      - uses: actions/checkout@v3
-      - uses: ./.github/actions/fetch-codeql
-      - uses: bazelbuild/setup-bazelisk@v2
-      - name: Build Swift extractor
-        run: |
-          bazel run //swift:create-extractor-pack
-      - name: Run QL tests
-        run: |
-          codeql test run --threads=0 --ram 5000 --search-path "${{ github.workspace }}/swift/extractor-pack" --check-databases --check-unused-labels --check-repeated-labels --check-redefined-labels --check-use-before-definition ql/test
-        env:
-          GITHUB_TOKEN: ${{ github.token }}

.github/workflows/sync-files.yml

@@ -1,20 +0,0 @@
-name: Check synchronized files
-
-on:
-  push:
-    branches:
-      - main
-      - 'rc/*'
-  pull_request:
-    branches:
-      - main
-      - 'rc/*'
-
-jobs:
-  sync:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-      - name: Check synchronized files
-        run: python config/sync-files.py
-

.github/workflows/validate-change-notes.yml

@@ -1,29 +0,0 @@
-name: Validate change notes
-
-on:
-  push:
-    paths:
-      - "*/ql/*/change-notes/**/*"
-      - ".github/workflows/validate-change-notes.yml"
-    branches:
-      - main
-      - "rc/*"
-  pull_request:
-    paths:
-      - "*/ql/*/change-notes/**/*"
-      - ".github/workflows/validate-change-notes.yml"
-
-jobs:
-  check-change-note:
-    runs-on: ubuntu-latest
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@v3
-
-      - name: Setup CodeQL
-        uses: ./.github/actions/fetch-codeql
-
-      - name: Fail if there are any errors with existing change notes
-
-        run: |
-          codeql pack release --groups cpp,csharp,java,javascript,python,ruby,-examples,-test,-experimental

.gitignore

@@ -9,7 +9,6 @@
 # qltest projects and artifacts
 */ql/test/**/*.testproj
 */ql/test/**/*.actual
-*/ql/test/**/go.sum
 
 # Visual studio temporaries, except a file used by QL4VS
 .vs/*
@@ -18,40 +17,7 @@
 # Byte-compiled python files
 *.pyc
 
-# python virtual environment folder
-.venv/
-
-# binary files created by pytest-cov
-.coverage
-
 # It's useful (though not required) to be able to unpack codeql in the ql checkout itself
 /codeql/
 
 csharp/extractor/Semmle.Extraction.CSharp.Driver/Properties/launchSettings.json
-
-# Avoid committing cached package components
-.codeql
-
-# Compiled class file
-*.class
-
-# links created by bazel
-/bazel-*
-
-# local bazel options
-/local.bazelrc
-
-# CLion project files
-/.clwb
-
-# Go build artifacts
-go/build/*
-
-# Go binaries
-go/tools/bin
-go/tools/linux64
-go/tools/osx64
-go/tools/win64
-go/tools/tokenizer.jar
-go/main
-

.lgtm.yml

@@ -6,7 +6,6 @@ path_classifiers:
   test:
   - csharp/ql/src
   - csharp/ql/test
-  - go/ql/test
   - javascript/extractor/parser-tests
   - javascript/extractor/tests
   - javascript/ql/src
@@ -14,9 +13,6 @@ path_classifiers:
   - python/ql/src
   - python/ql/test
 
-  example:
-  - go/ql/src
-
 queries:
   - include: "*"
 

.pre-commit-config.yaml

@@ -1,51 +0,0 @@
-# See https://pre-commit.com for more information
-# See https://pre-commit.com/hooks.html for more hooks
-repos:
-  - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v3.2.0
-    hooks:
-      - id: trailing-whitespace
-        exclude: /test/.*$(?<!\.ql)(?<!\.qll)(?<!\.qlref)
-      - id: end-of-file-fixer
-        exclude: /test/.*$(?<!\.ql)(?<!\.qll)(?<!\.qlref)
-
-  - repo: https://github.com/pre-commit/mirrors-clang-format
-    rev: v13.0.1
-    hooks:
-      - id: clang-format
-        files: ^swift/.*\.(h|c|cpp)$
-
-  - repo: local
-    hooks:
-      - id: codeql-format
-        name: Fix QL file formatting
-        files: \.qll?$
-        language: system
-        entry: codeql query format --in-place
-
-      - id: sync-files
-        name: Fix files required to be identical
-        files: \.(qll?|qhelp)$
-        language: system
-        entry: python3 config/sync-files.py --latest
-        pass_filenames: false
-
-      - id: qhelp
-        name: Check query help generation
-        files: \.qhelp$
-        language: system
-        entry: python3 misc/scripts/check-qhelp.py
-
-      - id: swift-codegen
-        name: Run Swift checked in code generation
-        files: ^swift/(codegen/|.*/generated/|ql/lib/(swift\.dbscheme$|codeql/swift/elements))
-        language: system
-        entry: bazel run //swift/codegen
-        pass_filenames: false
-
-      - id: swift-codegen-unit-tests
-        name: Run Swift code generation unit tests
-        files: ^swift/codegen/.*\.py$
-        language: system
-        entry: bazel test //swift/codegen/test
-        pass_filenames: false

.vscode/extensions.json

@@ -3,8 +3,8 @@
     // Extension identifier format: ${publisher}.${name}. Example: vscode.csharp
     // List of extensions which should be recommended for users of this workspace.
     "recommendations": [
-        "GitHub.vscode-codeql"
+        "github.vscode-codeql"
     ],
     // List of extensions recommended by VS Code that should not be recommended for users of this workspace.
     "unwantedRecommendations": []
-}
+}

.vscode/settings.json

@@ -1,3 +0,0 @@
-{
-    "omnisharp.autoStart": false
-}

CODEOWNERS

@@ -1,44 +1,20 @@
 /cpp/ @github/codeql-c-analysis
 /csharp/ @github/codeql-csharp
-/go/ @github/codeql-go
 /java/ @github/codeql-java
 /javascript/ @github/codeql-javascript
 /python/ @github/codeql-python
-/ruby/ @github/codeql-ruby
-/swift/ @github/codeql-c
-/java/kotlin-extractor/ @github/codeql-kotlin
-/java/kotlin-explorer/ @github/codeql-kotlin
 
-# ML-powered queries
-/javascript/ql/experimental/adaptivethreatmodeling/ @github/codeql-ml-powered-queries-reviewers
+# Assign query help for docs review
+/cpp/**/*.qhelp @hubwriter
+/csharp/**/*.qhelp @jf205
+/java/**/*.qhelp @felicitymay
+/javascript/**/*.qhelp @mchammer01
+/python/**/*.qhelp @felicitymay
+/docs/language/ @shati-patel @jf205
 
-# Notify members of codeql-go about PRs to the shared data-flow library files
-/java/ql/src/semmle/code/java/dataflow/internal/DataFlowImpl.qll @github/codeql-java @github/codeql-go
-/java/ql/src/semmle/code/java/dataflow/internal/DataFlowImpl2.qll @github/codeql-java @github/codeql-go
-/java/ql/src/semmle/code/java/dataflow/internal/DataFlowImplCommon.qll @github/codeql-java @github/codeql-go
-/java/ql/src/semmle/code/java/dataflow/internal/tainttracking1/TaintTrackingImpl.qll @github/codeql-java @github/codeql-go
-/java/ql/src/semmle/code/java/dataflow/internal/tainttracking2/TaintTrackingImpl.qll @github/codeql-java @github/codeql-go
-
-# CodeQL tools and associated docs
-/docs/codeql-cli/ @github/codeql-cli-reviewers
-/docs/codeql-for-visual-studio-code/ @github/codeql-vscode-reviewers
-/docs/ql-language-reference/ @github/codeql-frontend-reviewers
-/docs/query-*-style-guide.md @github/codeql-analysis-reviewers
-
-# QL for QL reviewers
-/ql/ @github/codeql-ql-for-ql-reviewers
-
-# Bazel
-**/*.bazel @github/codeql-ci-reviewers
-**/*.bzl @github/codeql-ci-reviewers
-
-# Documentation etc
-/*.md @github/code-scanning-product
-/LICENSE @github/code-scanning-product
-
-# Workflows
-/.github/workflows/ @github/codeql-ci-reviewers
-/.github/workflows/go-* @github/codeql-go
-/.github/workflows/js-ml-tests.yml @github/codeql-ml-powered-queries-reviewers
-/.github/workflows/ql-for-ql-* @github/codeql-ql-for-ql-reviewers
-/.github/workflows/ruby-* @github/codeql-ruby
+# Exclude help for experimental queries from docs review
+/cpp/**/experimental/**/*.qhelp @github/codeql-c-analysis
+/csharp/**/experimental/**/*.qhelp @github/codeql-csharp
+/java/**/experimental/**/*.qhelp @github/codeql-java
+/javascript/**/experimental/**/*.qhelp @github/codeql-javascript
+/python/**/experimental/**/*.qhelp @github/codeql-python

CONTRIBUTING.md

@@ -2,11 +2,8 @@
 
 We welcome contributions to our CodeQL libraries and queries. Got an idea for a new check, or how to improve an existing query? Then please go ahead and open a pull request! Contributions to this project are [released](https://help.github.com/articles/github-terms-of-service/#6-contributions-under-repository-license) to the public under the [project's open source license](LICENSE).
 
-There is lots of useful documentation to help you write queries, ranging from information about query file structure to tutorials for specific target languages. For more information on the documentation available, see [CodeQL queries](https://codeql.github.com/docs/writing-codeql-queries/codeql-queries) on [codeql.github.com](https://codeql.github.com).
+There is lots of useful documentation to help you write queries, ranging from information about query file structure to tutorials for specific target languages. For more information on the documentation available, see [CodeQL queries](https://help.semmle.com/QL/learn-ql/writing-queries/writing-queries.html) on [help.semmle.com](https://help.semmle.com).
 
-## Change notes
-
-Any nontrivial user-visible change to a query pack or library pack should have a change note. For details on how to add a change note for your change, see [this guide](docs/change-notes.md).
 
 ## Submitting a new experimental query
 
@@ -14,14 +11,13 @@ If you have an idea for a query that you would like to share with other CodeQL u
 
 1. **Directory structure**
 
-    There are six language-specific query directories in this repository:
+    There are five language-specific query directories in this repository:
 
       * C/C++: `cpp/ql/src`
       * C#: `csharp/ql/src`
       * Java: `java/ql/src`
       * JavaScript: `javascript/ql/src`
       * Python: `python/ql/src`
-      * Ruby: `ruby/ql/src`
 
     Each language-specific directory contains further subdirectories that group queries based on their `@tags` or purpose.
     - Experimental queries and libraries are stored in the `experimental` subdirectory within each language-specific directory in the [CodeQL repository](https://github.com/github/codeql). For example, experimental Java queries and libraries are stored in `java/ql/src/experimental` and any corresponding tests in `java/ql/test/experimental`.
@@ -36,17 +32,11 @@ If you have an idea for a query that you would like to share with other CodeQL u
 
     For details, see the [guide on query metadata](docs/query-metadata-style-guide.md).
 
-    Make sure the `select` statement is compatible with the query `@kind`. See [About CodeQL queries](https://codeql.github.com/docs/writing-codeql-queries/about-codeql-queries/#select-clause) on codeql.github.com.
+    Make sure the `select` statement is compatible with the query `@kind`. See [About CodeQL queries](https://help.semmle.com/QL/learn-ql/writing-queries/introduction-to-queries.html#select-clause) on help.semmle.com.
 
 3. **Formatting**
 
-    - The queries and libraries must be autoformatted, for example using the "Format Document" command in [CodeQL for Visual Studio Code](https://codeql.github.com/docs/codeql-for-visual-studio-code/about-codeql-for-visual-studio-code).
-
-    If you prefer, you can either:
-    1. install the [pre-commit framework](https://pre-commit.com/) and install the configured hooks on this repo via `pre-commit install`, or
-    2. use this [pre-commit hook](misc/scripts/pre-commit) that automatically checks whether your files are correctly formatted.
-
-    See the [pre-commit hook installation guide](docs/pre-commit-hook-setup.md) for instructions on the two approaches.
+    - The queries and libraries must be autoformatted, for example using the "Format Document" command in [CodeQL for Visual Studio Code](https://help.semmle.com/codeql/codeql-for-vscode/procedures/about-codeql-for-vscode.html).
 
 4. **Compilation**
 
@@ -57,20 +47,12 @@ If you have an idea for a query that you would like to share with other CodeQL u
 
     - The query must have at least one true positive result on some revision of a real project.
 
-6. **Query help files and unit tests**
-
-	- Query help (`.qhelp`) files and unit tests are optional (but strongly encouraged!) for queries in the `experimental` directories. For more information about contributing query help files and unit tests, see [Supported CodeQL queries and libraries](docs/supported-queries.md).
-
-Experimental queries and libraries may not be actively maintained as the supported libraries evolve. They may also be changed in backwards-incompatible ways or may be removed entirely in the future without deprecation warnings.
+Experimental queries and libraries may not be actively maintained as the [supported](docs/supported-queries.md) libraries evolve. They may also be changed in backwards-incompatible ways or may be removed entirely in the future without deprecation warnings.
 
 After the experimental query is merged, we welcome pull requests to improve it. Before a query can be moved out of the `experimental` subdirectory, it must satisfy [the requirements for being a supported query](docs/supported-queries.md).
 
 ## Using your personal data
 
-If you contribute to this project, we will record your name and email address (as provided by you with your contributions) as part of the code repositories, which are public. We might also use this information to contact you in relation to your contributions, as well as in the normal course of software development. We also store records of CLA agreements signed in the past, but no longer require contributors to sign a CLA. Under GDPR legislation, we do this on the basis of our legitimate interest in creating the CodeQL product.
+If you contribute to this project, we will record your name and email address (as provided by you with your contributions) as part of the code repositories, which are public. We might also use this information to contact you in relation to your contributions, as well as in the normal course of software development. We also store records of CLA agreements signed in the past, but no longer require contributors to sign a CLA. Under GDPR legislation, we do this on the basis of our legitimate interest in creating the CodeQL product. 
 
 Please do get in touch (privacy@github.com) if you have any questions about this or our data protection policies.
-
-## Bazel
-Please notice that any bazel targets and definitions in this repository are currently experimental
-and for internal use only.

README.md

@@ -1,22 +1,20 @@
 # CodeQL
 
-This open source repository contains the standard CodeQL libraries and queries that power [GitHub Advanced Security](https://github.com/features/security/code) and the other application security products that [GitHub](https://github.com/features/security/) makes available to its customers worldwide.
+This open source repository contains the standard CodeQL libraries and queries that power [LGTM](https://lgtm.com) and the other CodeQL products that [GitHub](https://github.com) makes available to its customers worldwide. For the queries, libraries, and extractor that power Go analysis, visit the [CodeQL for Go repository](https://github.com/github/codeql-go).
 
 ## How do I learn CodeQL and run queries?
 
-There is [extensive documentation](https://codeql.github.com/docs/) on getting started with writing CodeQL.
-You can use the [CodeQL for Visual Studio Code](https://codeql.github.com/docs/codeql-for-visual-studio-code/) extension or the [interactive query console](https://lgtm.com/help/lgtm/using-query-console) on LGTM.com (Semmle Legacy product) to try out your queries on any open source project that's currently being analyzed.
+There is [extensive documentation](https://help.semmle.com/QL/learn-ql/) on getting started with writing CodeQL.
+You can use the [interactive query console](https://lgtm.com/help/lgtm/using-query-console) on LGTM.com or the [CodeQL for Visual Studio Code](https://help.semmle.com/codeql/codeql-for-vscode.html) extension to try out your queries on any open source project that's currently being analyzed.
 
 ## Contributing
 
-We welcome contributions to our standard library and standard checks. Do you have an idea for a new check, or how to improve an existing query? Then please go ahead and open a pull request! Before you do, though, please take the time to read our [contributing guidelines](CONTRIBUTING.md). You can also consult our [style guides](https://github.com/github/codeql/tree/main/docs) to learn how to format your code for consistency and clarity, how to write query metadata, and how to write query help documentation for your query.
+We welcome contributions to our standard library and standard checks. Do you have an idea for a new check, or how to improve an existing query? Then please go ahead and open a pull request! Before you do, though, please take the time to read our [contributing guidelines](CONTRIBUTING.md). You can also consult our [style guides](https://github.com/github/codeql/tree/master/docs) to learn how to format your code for consistency and clarity, how to write query metadata, and how to write query help documentation for your query.
 
 ## License
 
 The code in this repository is licensed under the [MIT License](LICENSE) by [GitHub](https://github.com).
 
-The CodeQL CLI (including the CodeQL engine) is hosted in a [different repository](https://github.com/github/codeql-cli-binaries) and is [licensed separately](https://github.com/github/codeql-cli-binaries/blob/main/LICENSE.md). If you'd like to use the CodeQL CLI to analyze closed-source code, you will need a separate commercial license; please [contact us](https://github.com/enterprise/contact) for further help.
-
 ## Visual Studio Code integration
 
 If you use Visual Studio Code to work in this repository, there are a few integration features to make development easier.

WORKSPACE.bazel

@@ -1,12 +0,0 @@
-# Please notice that any bazel targets and definitions in this repository are currently experimental
-# and for internal use only.
-
-workspace(name = "codeql")
-
-load("//misc/bazel:workspace.bzl", "codeql_workspace")
-
-codeql_workspace()
-
-load("//misc/bazel:workspace_deps.bzl", "codeql_workspace_deps")
-
-codeql_workspace_deps()

change-notes/1.25/analysis-csharp.md

@@ -28,51 +28,27 @@ The following changes in version 1.25 affect C# analysis in all applications.
   such as `A<int>.B`, no longer are considered unbound generics. (Such nested types do,
   however, still have relevant `.getSourceDeclaration()`s, for example `A<>.B`.)
 * The data-flow library has been improved, which affects most security queries by potentially
-  adding more results:
-  - Flow through methods now takes nested field reads/writes into account.
-    For example, the library is able to track flow from `"taint"` to `Sink()` via the method
-    `GetF2F1()` in
-    ```csharp
-    class C1
-    {
-        string F1;
-    }
+  adding more results. Flow through methods now takes nested field reads/writes into account.
+  For example, the library is able to track flow from `"taint"` to `Sink()` via the method
+  `GetF2F1()` in
+  ```csharp
+  class C1
+  {
+      string F1;
+  }
 
-    class C2
-    {
-        C1 F2;
+  class C2
+  {
+      C1 F2;
+  
+      string GetF2F1() => F2.F1; // Nested field read
 
-        string GetF2F1() => F2.F1; // Nested field read
-
-        void M()
-        {
-            F2 = new C1() { F1 = "taint" };
-            Sink(GetF2F1()); // NEW: "taint" reaches here
-        }
-    }
-    ```
-  - Flow through collections is now modeled precisely. For example, instead of modeling an array
-    store `a[i] = x` as a taint-step from `x` to `a`, we now model it as a data-flow step that
-    stores `x` into `a`. To get the value back out, a matching read step must be taken.
-
-    For source-code based data-flow analysis, the following constructs are modeled as stores into
-    collections:
-    - Direct array assignments, `a[i] = x`.
-    - Array initializers, `new [] { x }`.
-    - C# 6-style array initializers, `new C() { Array = { [i] = x } }`.
-    - Call arguments that match a `params` parameter, where the C# compiler creates an array under-the-hood.
-    - `yield return` statements.
-
-    The following source-code constructs read from a collection:
-    - Direct array reads, `a[i]`.
-    - `foreach` statements.
-
-    For calls out to library code, existing flow summaries have been refined to precisely
-    capture how they interact with collection contents. For example, a call to
-    `System.Collections.Generic.List<T>.Add(T)` stores the value of the argument into the
-    qualifier, and a call to `System.Collections.Generic.List<T>.get_Item(int)` (that is, an
-    indexer call) reads contents out of the qualifier. Moreover, the effect of
-    collection-clearing methods such as `System.Collections.Generic.List<T>.Clear()` is now
-    also modeled.
+      void M()
+      {
+          F2 = new C1() { F1 = "taint" };
+          Sink(GetF2F1()); // NEW: "taint" reaches here
+      }
+  }
+  ```
 
 ## Changes to autobuilder

change-notes/1.25/analysis-java.md

@@ -4,26 +4,20 @@ The following changes in version 1.25 affect Java analysis in all applications.
 
 ## General improvements
 
-The Java autobuilder has been improved to detect more Gradle Java versions.
+## New queries
+
+| **Query**                   | **Tags**  | **Purpose**                                                        |
+|-----------------------------|-----------|--------------------------------------------------------------------|
+
 
 ## Changes to existing queries
 
 | **Query**                    | **Expected impact**    | **Change**                        |
 |------------------------------|------------------------|-----------------------------------|
-| Hard-coded credential in API call (`java/hardcoded-credential-api-call`) | More results | The query now recognizes the `BasicAWSCredentials` class of the Amazon client SDK library with hardcoded access key/secret key. |
-| Deserialization of user-controlled data (`java/unsafe-deserialization`) | Fewer false positive results | The query no longer reports results using `org.apache.commons.io.serialization.ValidatingObjectInputStream`. |
-| Use of a broken or risky cryptographic algorithm (`java/weak-cryptographic-algorithm`) | More results | The query now recognizes the `MessageDigest.getInstance` method. |
-| Use of a potentially broken or risky cryptographic algorithm (`java/potentially-weak-cryptographic-algorithm`) | More results | The query now recognizes the `MessageDigest.getInstance` method. |
-| Reading from a world writable file (`java/world-writable-file-read`) | More results | The query now recognizes more JDK file operations. |
+
 
 ## Changes to libraries
 
-* The data-flow library has been improved with more taint flow modeling for the
-  Collections framework and other classes of the JDK. This affects all security
-  queries using data flow and can yield additional results.
-* The data-flow library has been improved with more taint flow modeling for the
-  Spring framework. This affects all security queries using data flow and can
-  yield additional results on project that rely on the Spring framework.
 * The data-flow library has been improved, which affects most security queries by potentially
   adding more results. Flow through methods now takes nested field reads/writes into account.
   For example, the library is able to track flow from `"taint"` to `sink()` via the method
@@ -45,5 +39,3 @@ The Java autobuilder has been improved to detect more Gradle Java versions.
     }
   }
   ```
-* The library has been extended with more support for Java 14 features
-  (`switch` expressions and pattern-matching for `instanceof`).

change-notes/1.25/analysis-javascript.md

@@ -6,10 +6,8 @@
   - [Promise](https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/Promise)
   - [bluebird](http://bluebirdjs.com/)
   - [express](https://www.npmjs.com/package/express)
-  - [execa](https://www.npmjs.com/package/execa)
   - [fancy-log](https://www.npmjs.com/package/fancy-log)
   - [fastify](https://www.npmjs.com/package/fastify)
-  - [foreground-child](https://www.npmjs.com/package/foreground-child)
   - [fstream](https://www.npmjs.com/package/fstream)
   - [jGrowl](https://github.com/stanlemon/jGrowl)
   - [jQuery](https://jquery.com/)
@@ -19,7 +17,6 @@
   - [mssql](https://www.npmjs.com/package/mssql)
   - [mysql](https://www.npmjs.com/package/mysql)
   - [npmlog](https://www.npmjs.com/package/npmlog)
-  - [opener](https://www.npmjs.com/package/opener)
   - [pg](https://www.npmjs.com/package/pg)
   - [sequelize](https://www.npmjs.com/package/sequelize)
   - [spanner](https://www.npmjs.com/package/spanner)
@@ -30,7 +27,7 @@
   - [yargs](https://www.npmjs.com/package/yargs)
   - [webpack-dev-server](https://www.npmjs.com/package/webpack-dev-server)
 
-* TypeScript 4.0 is now supported.
+* TypeScript 3.9 is now supported.
 
 * TypeScript code embedded in HTML and Vue files is now extracted and analyzed.
 

change-notes/1.25/analysis-python.md

@@ -1,9 +1,22 @@
 # Improvements to Python analysis
 
+The following changes in version 1.25 affect Python analysis in all applications.
+
+## General improvements
+
+
+## New queries
+
+| **Query**                   | **Tags**  | **Purpose**                                                        |
+|-----------------------------|-----------|--------------------------------------------------------------------|
+
+
+## Changes to existing queries
+
+| **Query**                  | **Expected impact**    | **Change**                                                       |
+|----------------------------|------------------------|------------------------------------------------------------------|
+
+
+## Changes to libraries
+
 * Importing `semmle.python.web.HttpRequest` will no longer import `UntrustedStringKind` transitively. `UntrustedStringKind` is the most commonly used non-abstract subclass of `ExternalStringKind`. If not imported (by one mean or another), taint-tracking queries that concern `ExternalStringKind` will not produce any results. Please ensure such queries contain an explicit import (`import semmle.python.security.strings.Untrusted`).
-* Added model of taint sources for HTTP servers using `http.server`.
-* Added taint modeling of routed parameters in Flask.
-* Improved modeling of built-in methods on strings for taint tracking.
-* Improved classification of test files.
-* New class `BoundMethodValue` represents a bound method during runtime.
-* The query `py/command-line-injection` now recognizes command execution with the `fabric` and `invoke` Python libraries.

change-notes/1.26/analysis-cpp.md

@@ -1,31 +0,0 @@
-# Improvements to C/C++ analysis
-
-The following changes in version 1.26 affect C/C++ analysis in all applications.
-
-## General improvements
-
-## New queries
-
-| **Query**                   | **Tags**  | **Purpose**                                                        |
-|-----------------------------|-----------|--------------------------------------------------------------------|
-
-## Changes to existing queries
-
-| **Query**                  | **Expected impact**    | **Change**                                                       |
-|----------------------------|------------------------|------------------------------------------------------------------|
-| Declaration hides parameter (`cpp/declaration-hides-parameter`) | Fewer false positive results | False positives involving template functions have been fixed. |
-| Inconsistent direction of for loop (`cpp/inconsistent-loop-direction`) | Fewer false positive results | The query now accounts for intentional wrapping of an unsigned loop counter. |
-| Overflow in uncontrolled allocation size (`cpp/uncontrolled-allocation-size`) | | The precision of this query has been decreased from "high" to "medium". As a result, the query is still run but results are no longer displayed on LGTM by default. |
-| Comparison result is always the same (`cpp/constant-comparison`) | More correct results | Bounds on expressions involving multiplication can now be determined in more cases. |
-
-## Changes to libraries
-
-* The QL class `Block`, denoting the `{ ... }` statement, is renamed to `BlockStmt`.
-* The models library now models many taint flows through `std::array`, `std::vector`, `std::deque`, `std::list` and `std::forward_list`.
-* The models library now models many more taint flows through `std::string`.
-* The models library now models many taint flows through `std::istream` and `std::ostream`.
-* The models library now models some taint flows through `std::shared_ptr`, `std::unique_ptr`, `std::make_shared` and `std::make_unique`.
-* The models library now models many taint flows through `std::pair`, `std::map`, `std::unordered_map`, `std::set` and `std::unordered_set`.
-* The models library now models `bcopy`.
-* The `SimpleRangeAnalysis` library now supports multiplications of the form
-  `e1 * e2` and `x *= e2` when `e1` and `e2` are unsigned or constant.

change-notes/1.26/analysis-java.md

@@ -1,20 +0,0 @@
-# Improvements to Java analysis
-
-The following changes in version 1.26 affect Java analysis in all applications.
-
-## General improvements
-
-## New queries
-
-| **Query**                   | **Tags**  | **Purpose**                                                        |
-|-----------------------------|-----------|--------------------------------------------------------------------|
-
-
-## Changes to existing queries
-
-| **Query**                    | **Expected impact**    | **Change**                        |
-|------------------------------|------------------------|-----------------------------------|
-
-
-## Changes to libraries
-

change-notes/1.26/analysis-javascript.md

@@ -1,73 +0,0 @@
-# Improvements to JavaScript analysis
-
-## General improvements
-
-* Angular-specific taint sources and sinks are now recognized by the security queries.
-
-* Support for React has improved, with better handling of react hooks, react-router path parameters, lazy-loaded components, and components transformed using `react-redux` and/or `styled-components`.
-
-* Dynamic imports are now analyzed more precisely.
-
-* Support for the following frameworks and libraries has been improved:
-  - [@angular/*](https://www.npmjs.com/package/@angular/core)
-  - [AWS Serverless](https://docs.aws.amazon.com/serverless-application-model/latest/developerguide/sam-resource-function.html)
-  - [Alibaba Serverless](https://www.alibabacloud.com/help/doc-detail/156876.htm)
-  - [debounce](https://www.npmjs.com/package/debounce)
-  - [bluebird](https://www.npmjs.com/package/bluebird)
-  - [call-limit](https://www.npmjs.com/package/call-limit)
-  - [classnames](https://www.npmjs.com/package/classnames)
-  - [clsx](https://www.npmjs.com/package/clsx)
-  - [express](https://www.npmjs.com/package/express)
-  - [fast-json-stable-stringify](https://www.npmjs.com/package/fast-json-stable-stringify)
-  - [fast-safe-stringify](https://www.npmjs.com/package/fast-safe-stringify)
-  - [http](https://nodejs.org/api/http.html)
-  - [javascript-stringify](https://www.npmjs.com/package/javascript-stringify)
-  - [js-stringify](https://www.npmjs.com/package/js-stringify)
-  - [json-stable-stringify](https://www.npmjs.com/package/json-stable-stringify)
-  - [json-stringify-safe](https://www.npmjs.com/package/json-stringify-safe)
-  - [json3](https://www.npmjs.com/package/json3)
-  - [jQuery throttle / debounce](https://github.com/cowboy/jquery-throttle-debounce)
-  - [lodash](https://www.npmjs.com/package/lodash)
-  - [lodash.debounce](https://www.npmjs.com/package/lodash.debounce)
-  - [lodash.throttle](https://www.npmjs.com/package/lodash.throttle)
-  - [needle](https://www.npmjs.com/package/needle)
-  - [object-inspect](https://www.npmjs.com/package/object-inspect)
-  - [pretty-format](https://www.npmjs.com/package/pretty-format)
-  - [react](https://www.npmjs.com/package/react)
-  - [react-router-dom](https://www.npmjs.com/package/react-router-dom)
-  - [react-redux](https://www.npmjs.com/package/react-redux)
-  - [redis](https://www.npmjs.com/package/redis)
-  - [redux](https://www.npmjs.com/package/redux)
-  - [stringify-object](https://www.npmjs.com/package/stringify-object)
-  - [styled-components](https://www.npmjs.com/package/styled-components)
-  - [throttle-debounce](https://www.npmjs.com/package/throttle-debounce)
-  - [underscore](https://www.npmjs.com/package/underscore)
-
-* Analyzing files with the ".cjs" extension is now supported.
-* ES2021 features are now supported.
-
-## New queries
-
-| **Query**                                                                       | **Tags**                                                          | **Purpose**                                                                                                                                                                            |
-|---------------------------------------------------------------------------------|-------------------------------------------------------------------|----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
-
-
-## Changes to existing queries
-
-| **Query**                      | **Expected impact**          | **Change**                                                                |
-|--------------------------------|------------------------------|---------------------------------------------------------------------------|
-| Potentially unsafe external link (`js/unsafe-external-link`) | Fewer results | This query no longer flags URLs constructed using a template system where only the hash or query part of the URL is dynamic. |
-| Incomplete URL substring sanitization (`js/incomplete-url-substring-sanitization`) | More results | This query now recognizes additional URLs when the substring check is an inclusion check. |
-| Ambiguous HTML id attribute (`js/duplicate-html-id`) | Results no longer shown | Precision tag reduced to "low". The query is no longer run by default. |
-| Unused loop iteration variable (`js/unused-loop-variable`) | Fewer results | This query no longer flags variables in a destructuring array assignment that are not the last variable in the destructed array. |
-| Unsafe shell command constructed from library input (`js/shell-command-constructed-from-input`) | More results | This query now recognizes more commands where colon, dash, and underscore are used. |
-| Unsafe jQuery plugin (`js/unsafe-jquery-plugin`) | More results | This query now detects more unsafe uses of nested option properties. |
-| Client-side URL redirect (`js/client-side-unvalidated-url-redirection`) | More results | This query now recognizes some unsafe uses of `importScripts()` inside WebWorkers. |
-| Missing CSRF middleware (`js/missing-token-validation`) | More results | This query now recognizes writes to cookie and session variables as potentially vulnerable to CSRF attacks. |
-| Missing CSRF middleware (`js/missing-token-validation`) | Fewer results | This query now recognizes more ways of protecting against CSRF attacks. |
-| Client-side cross-site scripting (`js/xss`) | More results | This query now tracks data flow from `location.hash` more precisely. |
-
-
-## Changes to libraries
-* The predicate `TypeAnnotation.hasQualifiedName` now works in more cases when the imported library was not present during extraction.
-* The class `DomBasedXss::Configuration` has been deprecated, as it has been split into `DomBasedXss::HtmlInjectionConfiguration` and `DomBasedXss::JQueryHtmlOrSelectorInjectionConfiguration`. Unless specifically working with jQuery sinks, subclasses should instead be based on `HtmlInjectionConfiguration`. To use both configurations in a query, see [Xss.ql](https://github.com/github/codeql/blob/main/javascript/ql/src/Security/CWE-079/Xss.ql) for an example.

change-notes/1.26/analysis-python.md

@@ -1,37 +0,0 @@
-# Improvements to Python analysis
-
-The following changes in version 1.26 affect Python analysis in all applications.
-
-## General improvements
-
-## Changes to existing queries
-
-| **Query**                  | **Expected impact**    | **Change**                                                       |
-|----------------------------|------------------------|------------------------------------------------------------------|
-|`py/unsafe-deserialization` | Different results. | The underlying data flow library has been changed. See below for more details. |
-|`py/path-injection` | Different results. | The underlying data flow library has been changed. See below for more details. |
-|`py/command-line-injection` | Different results. | The underlying data flow library has been changed. See below for more details. |
-|`py/reflective-xss` | Different results. | The underlying data flow library has been changed. See below for more details. |
-|`py/sql-injection` | Different results. | The underlying data flow library has been changed. See below for more details. |
-|`py/code-injection` | Different results. | The underlying data flow library has been changed. See below for more details. |
-## Changes to libraries
-* Some of the security queries now use the shared data flow library for data flow and taint tracking. This has resulted in an overall more robust and accurate analysis. The libraries mentioned below have been modelled in this new framework. Other libraries (e.g. the web framework `CherryPy`) have not been modelled yet, and this may lead to a temporary loss of results for these frameworks.
-* Improved modelling of the following serialization libraries:
-  - `PyYAML`
-  - `dill`
-  - `pickle`
-  - `marshal`
-* Improved modelling of the following web frameworks:
-  - `Django` (Note that modelling of class-based response handlers is currently incomplete.)
-  - `Flask`
-* Support for Werkzeug `MultiDict`.
-* Support for the [Python Database API Specification v2.0 (PEP-249)](https://www.python.org/dev/peps/pep-0249/), including the following libraries:
-  - `MySQLdb`
-  - `mysql-connector-python`
-  - `django.db`
-* Improved modelling of the following command execution libraries:
-  - `Fabric`
-  - `Invoke`
-* Improved modelling of security-related standard library modules, such as `os`, `popen2`, `platform`, and `base64`.
-* The original versions of the updated queries have been preserved [here](https://github.com/github/codeql/tree/main/python/ql/src/experimental/Security-old-dataflow).
-* Added taint tracking support for string formatting through f-strings.

config/blame-deprecations.mjs

@@ -1,58 +0,0 @@
-import fs from "fs";
-import path from "path";
-import cp from "child_process";
-function* walk(dir) {
-  for (const file of fs.readdirSync(dir)) {
-    const filePath = path.join(dir, file);
-    if (fs.statSync(filePath).isDirectory()) {
-      yield* walk(filePath);
-    } else {
-      yield filePath;
-    }
-  }
-}
-
-function* deprecatedFiles(dir) {
-  for (const file of walk(dir)) {
-    if (file.endsWith(".ql") || file.endsWith(".qll")) {
-      const contents = fs.readFileSync(file, "utf8");
-      if (/\sdeprecated\s/.test(contents)) {
-        yield file;
-      }
-    }
-  }
-}
-
-const blameRegExp =
-  /^(\^?\w+)\s.+\s+(\d{4}-\d{2}-\d{2} \d{2}:\d{2}:\d{2} (?:\+|-)\d{4})\s+(\d+)\).*$/;
-
-function* deprecationMessages(dir) {
-  for (const file of deprecatedFiles(dir)) {
-    const blame = cp.execFileSync("git", ["blame", "--", file]);
-    const lines = blame.toString().split("\n");
-    for (let i = 0; i < lines.length; i++) {
-      const line = lines[i];
-      if (line.includes(" deprecated ")) {
-        try {
-          const [_, sha, time, lineNumber] = line.match(blameRegExp);
-          const date = new Date(time);
-          // check if it's within the last 14 months (a year, plus 2 months for safety, in case a PR was delayed)
-          if (date.getTime() >= Date.now() - 14 * 31 * 24 * 60 * 60 * 1000) {
-            continue;
-          }
-          const message = `${file}:${lineNumber} was last updated on ${date.getFullYear()}-${date.getMonth()}-${date.getDate()}`;
-          yield [message, date];
-        } catch (e) {
-          console.log(e);
-          console.log("----");
-          console.log(line);
-          console.log("----");
-          process.exit(0);
-        }
-      }
-    }
-  }
-}
-[...deprecationMessages(".")]
-  .sort((a, b) => a[1].getTime() - b[1].getTime())
-  .forEach((msg) => console.log(msg[0]));

config/identical-files.json

@@ -1,352 +1,297 @@
 {
   "DataFlow Java/C++/C#/Python": [
-    "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl.qll",
-    "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl2.qll",
-    "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl3.qll",
-    "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl4.qll",
-    "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl5.qll",
-    "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl6.qll",
-    "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImplForSerializability.qll",
-    "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImplForOnActivityResult.qll",
-    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImpl.qll",
-    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImpl2.qll",
-    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImpl3.qll",
-    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImpl4.qll",
-    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImplLocal.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl2.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl3.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl4.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImpl.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImpl2.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImpl3.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImpl4.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImpl5.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImplForContentDataFlow.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/DataFlowImpl.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/DataFlowImpl2.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/DataFlowImpl3.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/DataFlowImpl4.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlowImpl.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlowImpl2.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlowImplForLibraries.qll",
-    "swift/ql/lib/codeql/swift/dataflow/internal/DataFlowImpl.qll"
+    "java/ql/src/semmle/code/java/dataflow/internal/DataFlowImpl.qll",
+    "java/ql/src/semmle/code/java/dataflow/internal/DataFlowImpl2.qll",
+    "java/ql/src/semmle/code/java/dataflow/internal/DataFlowImpl3.qll",
+    "java/ql/src/semmle/code/java/dataflow/internal/DataFlowImpl4.qll",
+    "java/ql/src/semmle/code/java/dataflow/internal/DataFlowImpl5.qll",
+    "cpp/ql/src/semmle/code/cpp/dataflow/internal/DataFlowImpl.qll",
+    "cpp/ql/src/semmle/code/cpp/dataflow/internal/DataFlowImpl2.qll",
+    "cpp/ql/src/semmle/code/cpp/dataflow/internal/DataFlowImpl3.qll",
+    "cpp/ql/src/semmle/code/cpp/dataflow/internal/DataFlowImpl4.qll",
+    "cpp/ql/src/semmle/code/cpp/dataflow/internal/DataFlowImplLocal.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl2.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl3.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl4.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/DataFlowImpl.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/DataFlowImpl2.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/DataFlowImpl3.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/DataFlowImpl4.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/DataFlowImpl5.qll",
+    "python/ql/src/experimental/dataflow/internal/DataFlowImpl.qll",
+    "python/ql/src/experimental/dataflow/internal/DataFlowImpl2.qll"
   ],
   "DataFlow Java/C++/C#/Python Common": [
-    "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImplCommon.qll",
-    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImplCommon.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlowImplCommon.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImplCommon.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/DataFlowImplCommon.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlowImplCommon.qll",
-    "swift/ql/lib/codeql/swift/dataflow/internal/DataFlowImplCommon.qll"
+    "java/ql/src/semmle/code/java/dataflow/internal/DataFlowImplCommon.qll",
+    "cpp/ql/src/semmle/code/cpp/dataflow/internal/DataFlowImplCommon.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/dataflow/internal/DataFlowImplCommon.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/DataFlowImplCommon.qll",
+    "python/ql/src/experimental/dataflow/internal/DataFlowImplCommon.qll"
   ],
   "TaintTracking::Configuration Java/C++/C#/Python": [
-    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/tainttracking1/TaintTrackingImpl.qll",
-    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/tainttracking2/TaintTrackingImpl.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/tainttracking1/TaintTrackingImpl.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/tainttracking2/TaintTrackingImpl.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/tainttracking3/TaintTrackingImpl.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/tainttracking1/TaintTrackingImpl.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/tainttracking2/TaintTrackingImpl.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/tainttracking3/TaintTrackingImpl.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/tainttracking4/TaintTrackingImpl.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/tainttracking5/TaintTrackingImpl.qll",
-    "java/ql/lib/semmle/code/java/dataflow/internal/tainttracking1/TaintTrackingImpl.qll",
-    "java/ql/lib/semmle/code/java/dataflow/internal/tainttracking2/TaintTrackingImpl.qll",
-    "java/ql/lib/semmle/code/java/dataflow/internal/tainttracking3/TaintTrackingImpl.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/tainttracking1/TaintTrackingImpl.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/tainttracking2/TaintTrackingImpl.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/tainttracking3/TaintTrackingImpl.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/tainttracking4/TaintTrackingImpl.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/tainttracking1/TaintTrackingImpl.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/tainttrackingforlibraries/TaintTrackingImpl.qll",
-    "swift/ql/lib/codeql/swift/dataflow/internal/tainttracking1/TaintTrackingImpl.qll"
+    "cpp/ql/src/semmle/code/cpp/dataflow/internal/tainttracking1/TaintTrackingImpl.qll",
+    "cpp/ql/src/semmle/code/cpp/dataflow/internal/tainttracking2/TaintTrackingImpl.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/dataflow/internal/tainttracking1/TaintTrackingImpl.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/dataflow/internal/tainttracking2/TaintTrackingImpl.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/tainttracking1/TaintTrackingImpl.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/tainttracking2/TaintTrackingImpl.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/tainttracking3/TaintTrackingImpl.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/tainttracking4/TaintTrackingImpl.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/tainttracking5/TaintTrackingImpl.qll",
+    "java/ql/src/semmle/code/java/dataflow/internal/tainttracking1/TaintTrackingImpl.qll",
+    "java/ql/src/semmle/code/java/dataflow/internal/tainttracking2/TaintTrackingImpl.qll",
+    "python/ql/src/experimental/dataflow/internal/tainttracking1/TaintTrackingImpl.qll"
   ],
   "DataFlow Java/C++/C#/Python Consistency checks": [
-    "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImplConsistency.qll",
-    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImplConsistency.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlowImplConsistency.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImplConsistency.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/DataFlowImplConsistency.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlowImplConsistency.qll",
-    "swift/ql/lib/codeql/swift/dataflow/internal/DataFlowImplConsistency.qll"
-  ],
-  "DataFlow Java/C# Flow Summaries": [
-    "java/ql/lib/semmle/code/java/dataflow/internal/FlowSummaryImpl.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/FlowSummaryImpl.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/FlowSummaryImpl.qll"
-  ],
-  "SsaReadPosition Java/C#": [
-    "java/ql/lib/semmle/code/java/dataflow/internal/rangeanalysis/SsaReadPositionCommon.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/rangeanalysis/SsaReadPositionCommon.qll"
-  ],
-  "Model as Data Generation Java/C# - CaptureModels": [
-    "java/ql/src/utils/model-generator/internal/CaptureModels.qll",
-    "csharp/ql/src/utils/model-generator/internal/CaptureModels.qll"
-  ],
-  "Sign Java/C#": [
-    "java/ql/lib/semmle/code/java/dataflow/internal/rangeanalysis/Sign.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/rangeanalysis/Sign.qll"
-  ],
-  "SignAnalysis Java/C#": [
-    "java/ql/lib/semmle/code/java/dataflow/internal/rangeanalysis/SignAnalysisCommon.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/rangeanalysis/SignAnalysisCommon.qll"
-  ],
-  "Bound Java/C#": [
-    "java/ql/lib/semmle/code/java/dataflow/Bound.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/Bound.qll"
-  ],
-  "ModulusAnalysis Java/C#": [
-    "java/ql/lib/semmle/code/java/dataflow/ModulusAnalysis.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/ModulusAnalysis.qll"
+    "java/ql/src/semmle/code/java/dataflow/internal/DataFlowImplConsistency.qll",
+    "cpp/ql/src/semmle/code/cpp/dataflow/internal/DataFlowImplConsistency.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/dataflow/internal/DataFlowImplConsistency.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/DataFlowImplConsistency.qll",
+    "python/ql/src/experimental/dataflow/internal/DataFlowImplConsistency.qll"
   ],
   "C++ SubBasicBlocks": [
-    "cpp/ql/lib/semmle/code/cpp/controlflow/SubBasicBlocks.qll",
-    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/SubBasicBlocks.qll"
+    "cpp/ql/src/semmle/code/cpp/controlflow/SubBasicBlocks.qll",
+    "cpp/ql/src/semmle/code/cpp/dataflow/internal/SubBasicBlocks.qll"
   ],
   "IR Instruction": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/Instruction.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/Instruction.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/Instruction.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/Instruction.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/Instruction.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/Instruction.qll",
     "csharp/ql/src/experimental/ir/implementation/raw/Instruction.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/Instruction.qll"
   ],
   "IR IRBlock": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/IRBlock.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/IRBlock.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/IRBlock.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/IRBlock.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/IRBlock.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/IRBlock.qll",
     "csharp/ql/src/experimental/ir/implementation/raw/IRBlock.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/IRBlock.qll"
   ],
   "IR IRVariable": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/IRVariable.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/IRVariable.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/IRVariable.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/IRVariable.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/IRVariable.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/IRVariable.qll",
     "csharp/ql/src/experimental/ir/implementation/raw/IRVariable.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/IRVariable.qll"
   ],
   "IR IRFunction": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/IRFunction.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/IRFunction.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/IRFunction.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/IRFunction.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/IRFunction.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/IRFunction.qll",
     "csharp/ql/src/experimental/ir/implementation/raw/IRFunction.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/IRFunction.qll"
   ],
   "IR Operand": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/Operand.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/Operand.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/Operand.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/Operand.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/Operand.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/Operand.qll",
     "csharp/ql/src/experimental/ir/implementation/raw/Operand.qll",
-    "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/Operand.qll"
+    "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/Operand.qll" 
   ],
   "IR IRType": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/IRType.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/IRType.qll",
     "csharp/ql/src/experimental/ir/implementation/IRType.qll"
   ],
   "IR IRConfiguration": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/IRConfiguration.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/IRConfiguration.qll",
     "csharp/ql/src/experimental/ir/implementation/IRConfiguration.qll"
   ],
   "IR UseSoundEscapeAnalysis": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/UseSoundEscapeAnalysis.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/UseSoundEscapeAnalysis.qll",
     "csharp/ql/src/experimental/ir/implementation/UseSoundEscapeAnalysis.qll"
   ],
   "IR IRFunctionBase": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/internal/IRFunctionBase.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/internal/IRFunctionBase.qll",
     "csharp/ql/src/experimental/ir/implementation/internal/IRFunctionBase.qll"
   ],
   "IR Operand Tag": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/internal/OperandTag.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/internal/OperandTag.qll",
     "csharp/ql/src/experimental/ir/implementation/internal/OperandTag.qll"
   ],
-  "IR TInstruction": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/internal/TInstruction.qll",
+  "IR TInstruction":[
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/internal/TInstruction.qll",
     "csharp/ql/src/experimental/ir/implementation/internal/TInstruction.qll"
   ],
-  "IR TIRVariable": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/internal/TIRVariable.qll",
+  "IR TIRVariable":[
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/internal/TIRVariable.qll",
     "csharp/ql/src/experimental/ir/implementation/internal/TIRVariable.qll"
   ],
   "IR IR": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/IR.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/IR.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/IR.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/IR.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/IR.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/IR.qll",
     "csharp/ql/src/experimental/ir/implementation/raw/IR.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/IR.qll"
   ],
   "IR IRConsistency": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/IRConsistency.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/IRConsistency.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/IRConsistency.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/IRConsistency.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/IRConsistency.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/IRConsistency.qll",
     "csharp/ql/src/experimental/ir/implementation/raw/IRConsistency.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/IRConsistency.qll"
   ],
   "IR PrintIR": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/PrintIR.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/PrintIR.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/PrintIR.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/PrintIR.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/PrintIR.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/PrintIR.qll",
     "csharp/ql/src/experimental/ir/implementation/raw/PrintIR.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/PrintIR.qll"
   ],
   "IR IntegerConstant": [
-    "cpp/ql/lib/semmle/code/cpp/ir/internal/IntegerConstant.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/internal/IntegerConstant.qll",
     "csharp/ql/src/experimental/ir/internal/IntegerConstant.qll"
   ],
   "IR IntegerInteval": [
-    "cpp/ql/lib/semmle/code/cpp/ir/internal/IntegerInterval.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/internal/IntegerInterval.qll",
     "csharp/ql/src/experimental/ir/internal/IntegerInterval.qll"
   ],
   "IR IntegerPartial": [
-    "cpp/ql/lib/semmle/code/cpp/ir/internal/IntegerPartial.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/internal/IntegerPartial.qll",
     "csharp/ql/src/experimental/ir/internal/IntegerPartial.qll"
   ],
   "IR Overlap": [
-    "cpp/ql/lib/semmle/code/cpp/ir/internal/Overlap.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/internal/Overlap.qll",
     "csharp/ql/src/experimental/ir/internal/Overlap.qll"
   ],
   "IR EdgeKind": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/EdgeKind.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/EdgeKind.qll",
     "csharp/ql/src/experimental/ir/implementation/EdgeKind.qll"
   ],
   "IR MemoryAccessKind": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/MemoryAccessKind.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/MemoryAccessKind.qll",
     "csharp/ql/src/experimental/ir/implementation/MemoryAccessKind.qll"
   ],
   "IR TempVariableTag": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/TempVariableTag.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/TempVariableTag.qll",
     "csharp/ql/src/experimental/ir/implementation/TempVariableTag.qll"
   ],
   "IR Opcode": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/Opcode.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/Opcode.qll",
     "csharp/ql/src/experimental/ir/implementation/Opcode.qll"
   ],
   "IR SSAConsistency": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/SSAConsistency.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/SSAConsistency.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/SSAConsistency.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/internal/SSAConsistency.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/internal/SSAConsistency.qll"
   ],
   "C++ IR InstructionImports": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/internal/InstructionImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/InstructionImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/InstructionImports.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/internal/InstructionImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/InstructionImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/internal/InstructionImports.qll"
   ],
   "C++ IR IRImports": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/internal/IRImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/IRImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/IRImports.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/internal/IRImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/IRImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/internal/IRImports.qll"
   ],
   "C++ IR IRBlockImports": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/internal/IRBlockImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/IRBlockImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/IRBlockImports.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/internal/IRBlockImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/IRBlockImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/internal/IRBlockImports.qll"
   ],
   "C++ IR IRFunctionImports": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/internal/IRFunctionImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/IRFunctionImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/IRFunctionImports.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/internal/IRFunctionImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/IRFunctionImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/internal/IRFunctionImports.qll"
   ],
   "C++ IR IRVariableImports": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/internal/IRVariableImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/IRVariableImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/IRVariableImports.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/internal/IRVariableImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/IRVariableImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/internal/IRVariableImports.qll"
   ],
   "C++ IR OperandImports": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/internal/OperandImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/OperandImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/OperandImports.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/internal/OperandImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/OperandImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/internal/OperandImports.qll"
   ],
   "C++ IR PrintIRImports": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/internal/PrintIRImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/PrintIRImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/PrintIRImports.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/internal/PrintIRImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/PrintIRImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/internal/PrintIRImports.qll"
   ],
   "C++ SSA SSAConstructionImports": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/SSAConstructionImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/SSAConstructionImports.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/SSAConstructionImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/internal/SSAConstructionImports.qll"
   ],
   "SSA AliasAnalysis": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/AliasAnalysis.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/AliasAnalysis.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/AliasAnalysis.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/internal/AliasAnalysis.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/internal/AliasAnalysis.qll"
   ],
-  "SSA PrintAliasAnalysis": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/PrintAliasAnalysis.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/PrintAliasAnalysis.qll"
-  ],
   "C++ SSA AliasAnalysisImports": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/AliasAnalysisImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/AliasAnalysisImports.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/AliasAnalysisImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/internal/AliasAnalysisImports.qll"
   ],
   "C++ IR ValueNumberingImports": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/gvn/internal/ValueNumberingImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/gvn/internal/ValueNumberingImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/gvn/internal/ValueNumberingImports.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/gvn/internal/ValueNumberingImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/gvn/internal/ValueNumberingImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/gvn/internal/ValueNumberingImports.qll"
   ],
   "IR SSA SimpleSSA": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/SimpleSSA.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/SimpleSSA.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/internal/SimpleSSA.qll"
   ],
   "IR AliasConfiguration (unaliased_ssa)": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/AliasConfiguration.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/AliasConfiguration.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/internal/AliasConfiguration.qll"
   ],
   "IR SSA SSAConstruction": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/SSAConstruction.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/SSAConstruction.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/SSAConstruction.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/internal/SSAConstruction.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/internal/SSAConstruction.qll"
   ],
   "IR SSA PrintSSA": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/PrintSSA.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/PrintSSA.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/PrintSSA.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/internal/PrintSSA.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/internal/PrintSSA.qll"
   ],
   "IR ValueNumberInternal": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/gvn/internal/ValueNumberingInternal.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/gvn/internal/ValueNumberingInternal.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/gvn/internal/ValueNumberingInternal.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/gvn/internal/ValueNumberingInternal.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/gvn/internal/ValueNumberingInternal.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/gvn/internal/ValueNumberingInternal.qll",
     "csharp/ql/src/experimental/ir/implementation/raw/gvn/internal/ValueNumberingInternal.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/gvn/internal/ValueNumberingInternal.qll"
   ],
   "C++ IR ValueNumber": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/gvn/ValueNumbering.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/gvn/ValueNumbering.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/gvn/ValueNumbering.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/gvn/ValueNumbering.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/gvn/ValueNumbering.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/gvn/ValueNumbering.qll",
     "csharp/ql/src/experimental/ir/implementation/raw/gvn/ValueNumbering.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/gvn/ValueNumbering.qll"
   ],
   "C++ IR PrintValueNumbering": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/gvn/PrintValueNumbering.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/gvn/PrintValueNumbering.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/gvn/PrintValueNumbering.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/gvn/PrintValueNumbering.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/gvn/PrintValueNumbering.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/gvn/PrintValueNumbering.qll",
     "csharp/ql/src/experimental/ir/implementation/raw/gvn/PrintValueNumbering.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/gvn/PrintValueNumbering.qll"
   ],
   "C++ IR ConstantAnalysis": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/constant/ConstantAnalysis.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/constant/ConstantAnalysis.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/constant/ConstantAnalysis.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/constant/ConstantAnalysis.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/constant/ConstantAnalysis.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/constant/ConstantAnalysis.qll"
   ],
   "C++ IR PrintConstantAnalysis": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/constant/PrintConstantAnalysis.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/constant/PrintConstantAnalysis.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/constant/PrintConstantAnalysis.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/constant/PrintConstantAnalysis.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/constant/PrintConstantAnalysis.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/constant/PrintConstantAnalysis.qll"
   ],
   "C++ IR ReachableBlock": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/internal/reachability/ReachableBlock.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/reachability/ReachableBlock.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/internal/reachability/ReachableBlock.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/reachability/ReachableBlock.qll"
   ],
   "C++ IR PrintReachableBlock": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/internal/reachability/PrintReachableBlock.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/reachability/PrintReachableBlock.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/internal/reachability/PrintReachableBlock.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/reachability/PrintReachableBlock.qll"
   ],
   "C++ IR Dominance": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/internal/reachability/Dominance.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/reachability/Dominance.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/internal/reachability/Dominance.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/reachability/Dominance.qll"
   ],
   "C++ IR PrintDominance": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/internal/reachability/PrintDominance.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/reachability/PrintDominance.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/internal/reachability/PrintDominance.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/reachability/PrintDominance.qll"
   ],
   "C# IR InstructionImports": [
     "csharp/ql/src/experimental/ir/implementation/raw/internal/InstructionImports.qll",
@@ -380,189 +325,11 @@
     "csharp/ql/src/experimental/ir/implementation/raw/gvn/internal/ValueNumberingImports.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/gvn/internal/ValueNumberingImports.qll"
   ],
-  "C# ControlFlowReachability": [
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/ControlFlowReachability.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/rangeanalysis/ControlFlowReachability.qll"
-  ],
-  "Inline Test Expectations": [
-    "cpp/ql/test/TestUtilities/InlineExpectationsTest.qll",
-    "csharp/ql/test/TestUtilities/InlineExpectationsTest.qll",
-    "java/ql/test/TestUtilities/InlineExpectationsTest.qll",
-    "python/ql/test/TestUtilities/InlineExpectationsTest.qll",
-    "ruby/ql/test/TestUtilities/InlineExpectationsTest.qll",
-    "ql/ql/test/TestUtilities/InlineExpectationsTest.qll"
-  ],
-  "C++ ExternalAPIs": [
-    "cpp/ql/src/Security/CWE/CWE-020/ExternalAPIs.qll",
-    "cpp/ql/src/Security/CWE/CWE-020/ir/ExternalAPIs.qll"
-  ],
-  "C++ SafeExternalAPIFunction": [
-    "cpp/ql/src/Security/CWE/CWE-020/SafeExternalAPIFunction.qll",
-    "cpp/ql/src/Security/CWE/CWE-020/ir/SafeExternalAPIFunction.qll"
-  ],
   "XML": [
-    "cpp/ql/lib/semmle/code/cpp/XML.qll",
-    "csharp/ql/lib/semmle/code/csharp/XML.qll",
-    "java/ql/lib/semmle/code/xml/XML.qll",
-    "javascript/ql/lib/semmle/javascript/XML.qll",
-    "python/ql/lib/semmle/python/xml/XML.qll"
-  ],
-  "DuplicationProblems.inc.qhelp": [
-    "cpp/ql/src/Metrics/Files/DuplicationProblems.inc.qhelp",
-    "javascript/ql/src/Metrics/DuplicationProblems.inc.qhelp",
-    "python/ql/src/Metrics/DuplicationProblems.inc.qhelp"
-  ],
-  "CommentedOutCodeQuery.inc.qhelp": [
-    "cpp/ql/src/Documentation/CommentedOutCodeQuery.inc.qhelp",
-    "python/ql/src/Lexical/CommentedOutCodeQuery.inc.qhelp",
-    "csharp/ql/src/Bad Practices/Comments/CommentedOutCodeQuery.inc.qhelp",
-    "java/ql/src/Violations of Best Practice/Comments/CommentedOutCodeQuery.inc.qhelp",
-    "javascript/ql/src/Comments/CommentedOutCodeQuery.inc.qhelp"
-  ],
-  "FLinesOfCodeReferences.inc.qhelp": [
-    "java/ql/src/Metrics/Files/FLinesOfCodeReferences.inc.qhelp",
-    "javascript/ql/src/Metrics/FLinesOfCodeReferences.inc.qhelp"
-  ],
-  "FCommentRatioCommon.inc.qhelp": [
-    "java/ql/src/Metrics/Files/FCommentRatioCommon.inc.qhelp",
-    "javascript/ql/src/Metrics/FCommentRatioCommon.inc.qhelp"
-  ],
-  "FLinesOfCodeOverview.inc.qhelp": [
-    "java/ql/src/Metrics/Files/FLinesOfCodeOverview.inc.qhelp",
-    "javascript/ql/src/Metrics/FLinesOfCodeOverview.inc.qhelp"
-  ],
-  "CommentedOutCodeMetricOverview.inc.qhelp": [
-    "cpp/ql/src/Metrics/Files/CommentedOutCodeMetricOverview.inc.qhelp",
-    "csharp/ql/src/Metrics/Files/CommentedOutCodeMetricOverview.inc.qhelp",
-    "java/ql/src/Metrics/Files/CommentedOutCodeMetricOverview.inc.qhelp",
-    "javascript/ql/src/Comments/CommentedOutCodeMetricOverview.inc.qhelp",
-    "python/ql/src/Lexical/CommentedOutCodeMetricOverview.inc.qhelp"
-  ],
-  "FLinesOfDuplicatedCodeCommon.inc.qhelp": [
-    "java/ql/src/Metrics/Files/FLinesOfDuplicatedCodeCommon.inc.qhelp",
-    "javascript/ql/src/Metrics/FLinesOfDuplicatedCodeCommon.inc.qhelp",
-    "python/ql/src/Metrics/FLinesOfDuplicatedCodeCommon.inc.qhelp"
-  ],
-  "CommentedOutCodeReferences.inc.qhelp": [
-    "cpp/ql/src/Metrics/Files/CommentedOutCodeReferences.inc.qhelp",
-    "csharp/ql/src/Metrics/Files/CommentedOutCodeReferences.inc.qhelp",
-    "java/ql/src/Metrics/Files/CommentedOutCodeReferences.inc.qhelp",
-    "javascript/ql/src/Comments/CommentedOutCodeReferences.inc.qhelp",
-    "python/ql/src/Lexical/CommentedOutCodeReferences.inc.qhelp"
-  ],
-  "IDE Contextual Queries": [
-    "cpp/ql/src/IDEContextual.qll",
-    "csharp/ql/src/IDEContextual.qll",
-    "java/ql/src/IDEContextual.qll",
-    "javascript/ql/src/IDEContextual.qll",
-    "python/ql/src/analysis/IDEContextual.qll"
-  ],
-  "SSA C#": [
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/SsaImplCommon.qll",
-    "csharp/ql/lib/semmle/code/csharp/controlflow/internal/pressa/SsaImplCommon.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/basessa/SsaImplCommon.qll",
-    "csharp/ql/lib/semmle/code/cil/internal/SsaImplCommon.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/SsaImplCommon.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/SsaImplCommon.qll",
-    "swift/ql/lib/codeql/swift/dataflow/internal/SsaImplCommon.qll"
-  ],
-  "CryptoAlgorithms Python/JS/Ruby": [
-    "javascript/ql/lib/semmle/javascript/security/CryptoAlgorithms.qll",
-    "python/ql/lib/semmle/python/concepts/CryptoAlgorithms.qll",
-    "ruby/ql/lib/codeql/ruby/security/CryptoAlgorithms.qll"
-  ],
-  "CryptoAlgorithmNames Python/JS/Ruby": [
-    "javascript/ql/lib/semmle/javascript/security/internal/CryptoAlgorithmNames.qll",
-    "python/ql/lib/semmle/python/concepts/internal/CryptoAlgorithmNames.qll",
-    "ruby/ql/lib/codeql/ruby/security/internal/CryptoAlgorithmNames.qll"
-  ],
-  "SensitiveDataHeuristics Python/JS": [
-    "javascript/ql/lib/semmle/javascript/security/internal/SensitiveDataHeuristics.qll",
-    "python/ql/lib/semmle/python/security/internal/SensitiveDataHeuristics.qll",
-    "ruby/ql/lib/codeql/ruby/security/internal/SensitiveDataHeuristics.qll"
-  ],
-  "ReDoS Util Python/JS/Ruby/Java": [
-    "javascript/ql/lib/semmle/javascript/security/performance/ReDoSUtil.qll",
-    "python/ql/lib/semmle/python/security/performance/ReDoSUtil.qll",
-    "ruby/ql/lib/codeql/ruby/security/performance/ReDoSUtil.qll",
-    "java/ql/lib/semmle/code/java/security/performance/ReDoSUtil.qll"
-  ],
-  "ReDoS Exponential Python/JS/Ruby/Java": [
-    "javascript/ql/lib/semmle/javascript/security/performance/ExponentialBackTracking.qll",
-    "python/ql/lib/semmle/python/security/performance/ExponentialBackTracking.qll",
-    "ruby/ql/lib/codeql/ruby/security/performance/ExponentialBackTracking.qll",
-    "java/ql/lib/semmle/code/java/security/performance/ExponentialBackTracking.qll"
-  ],
-  "ReDoS Polynomial Python/JS/Ruby/Java": [
-    "javascript/ql/lib/semmle/javascript/security/performance/SuperlinearBackTracking.qll",
-    "python/ql/lib/semmle/python/security/performance/SuperlinearBackTracking.qll",
-    "ruby/ql/lib/codeql/ruby/security/performance/SuperlinearBackTracking.qll",
-    "java/ql/lib/semmle/code/java/security/performance/SuperlinearBackTracking.qll"
-  ],
-  "BadTagFilterQuery Python/JS/Ruby": [
-    "javascript/ql/lib/semmle/javascript/security/BadTagFilterQuery.qll",
-    "python/ql/lib/semmle/python/security/BadTagFilterQuery.qll",
-    "ruby/ql/lib/codeql/ruby/security/BadTagFilterQuery.qll"
-  ],
-  "CFG": [
-    "csharp/ql/lib/semmle/code/csharp/controlflow/internal/ControlFlowGraphImplShared.qll",
-    "ruby/ql/lib/codeql/ruby/controlflow/internal/ControlFlowGraphImplShared.qll",
-    "swift/ql/lib/codeql/swift/controlflow/internal/ControlFlowGraphImplShared.qll"
-  ],
-  "TypeTracker": [
-    "python/ql/lib/semmle/python/dataflow/new/internal/TypeTracker.qll",
-    "ruby/ql/lib/codeql/ruby/typetracking/TypeTracker.qll"
-  ],
-  "CodeQL Tutorial": [
-    "cpp/ql/lib/tutorial.qll",
-    "csharp/ql/lib/tutorial.qll",
-    "java/ql/lib/tutorial.qll",
-    "javascript/ql/lib/tutorial.qll",
-    "python/ql/lib/tutorial.qll",
-    "ruby/ql/lib/tutorial.qll"
-  ],
-  "AccessPathSyntax": [
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/AccessPathSyntax.qll",
-    "java/ql/lib/semmle/code/java/dataflow/internal/AccessPathSyntax.qll",
-    "javascript/ql/lib/semmle/javascript/frameworks/data/internal/AccessPathSyntax.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/AccessPathSyntax.qll"
-  ],
-  "IncompleteUrlSubstringSanitization": [
-    "javascript/ql/src/Security/CWE-020/IncompleteUrlSubstringSanitization.qll",
-    "ruby/ql/src/queries/security/cwe-020/IncompleteUrlSubstringSanitization.qll"
-  ],
-  "Concepts Python/Ruby/JS": [
-    "python/ql/lib/semmle/python/internal/ConceptsShared.qll",
-    "ruby/ql/lib/codeql/ruby/internal/ConceptsShared.qll",
-    "javascript/ql/lib/semmle/javascript/internal/ConceptsShared.qll"
-  ],
-  "Hostname Regexp queries": [
-    "javascript/ql/src/Security/CWE-020/HostnameRegexpShared.qll",
-    "python/ql/src/Security/CWE-020/HostnameRegexpShared.qll",
-    "ruby/ql/src/queries/security/cwe-020/HostnameRegexpShared.qll"
-  ],
-  "ApiGraphModels": [
-    "javascript/ql/lib/semmle/javascript/frameworks/data/internal/ApiGraphModels.qll",
-    "ruby/ql/lib/codeql/ruby/frameworks/data/internal/ApiGraphModels.qll"
-  ],
-  "TaintedFormatStringQuery Ruby/JS": [
-    "javascript/ql/lib/semmle/javascript/security/dataflow/TaintedFormatStringQuery.qll",
-    "ruby/ql/lib/codeql/ruby/security/TaintedFormatStringQuery.qll"
-  ],
-  "TaintedFormatStringCustomizations Ruby/JS": [
-    "javascript/ql/lib/semmle/javascript/security/dataflow/TaintedFormatStringCustomizations.qll",
-    "ruby/ql/lib/codeql/ruby/security/TaintedFormatStringCustomizations.qll"
-  ],
-  "HttpToFileAccessQuery JS/Ruby": [
-    "javascript/ql/lib/semmle/javascript/security/dataflow/HttpToFileAccessQuery.qll",
-    "ruby/ql/lib/codeql/ruby/security/HttpToFileAccessQuery.qll"
-  ],
-  "HttpToFileAccessCustomizations JS/Ruby": [
-    "javascript/ql/lib/semmle/javascript/security/dataflow/HttpToFileAccessCustomizations.qll",
-    "ruby/ql/lib/codeql/ruby/security/HttpToFileAccessCustomizations.qll"
-  ],
-  "Typo database": [
-    "javascript/ql/src/Expressions/TypoDatabase.qll",
-    "ql/ql/src/codeql_ql/style/TypoDatabase.qll"
+    "cpp/ql/src/semmle/code/cpp/XML.qll",
+    "csharp/ql/src/semmle/code/csharp/XML.qll",
+    "java/ql/src/semmle/code/xml/XML.qll",
+    "javascript/ql/src/semmle/javascript/XML.qll",
+    "python/ql/src/semmle/python/xml/XML.qll"
   ]
-}
+}

conftest.py

@@ -1 +0,0 @@
-# this empty file adds the repo root to PYTHON_PATH when running pytest

cpp/BUILD.bazel

@@ -1,17 +0,0 @@
-package(default_visibility = ["//visibility:public"])
-
-load("@rules_pkg//:mappings.bzl", "pkg_filegroup")
-
-alias(
-    name = "dbscheme",
-    actual = "//cpp/ql/lib:dbscheme",
-)
-
-pkg_filegroup(
-    name = "db-files",
-    srcs = [
-        ":dbscheme",
-        "//cpp/downgrades",
-        "//cpp/ql/lib:dbscheme-stats",
-    ],
-)

cpp/autobuilder/Semmle.Autobuild.Cpp.Tests/BuildScripts.cs

@@ -5,7 +5,6 @@ using System;
 using System.Linq;
 using Microsoft.Build.Construction;
 using System.Xml;
-using System.IO;
 
 namespace Semmle.Autobuild.Cpp.Tests
 {
@@ -44,8 +43,6 @@ namespace Semmle.Autobuild.Cpp.Tests
         public IDictionary<string, int> RunProcess = new Dictionary<string, int>();
         public IDictionary<string, string> RunProcessOut = new Dictionary<string, string>();
         public IDictionary<string, string> RunProcessWorkingDirectory = new Dictionary<string, string>();
-        public HashSet<string> CreateDirectories { get; } = new HashSet<string>();
-        public HashSet<(string, string)> DownloadFiles { get; } = new HashSet<(string, string)>();
 
         int IBuildActions.RunProcess(string cmd, string args, string? workingDirectory, IDictionary<string, string>? env, out IList<string> stdOut)
         {
@@ -138,14 +135,6 @@ namespace Semmle.Autobuild.Cpp.Tests
 
         string IBuildActions.GetFullPath(string path) => path;
 
-        string? IBuildActions.GetFileName(string? path) => Path.GetFileName(path?.Replace('\\', '/'));
-
-        public string? GetDirectoryName(string? path)
-        {
-            var dir = Path.GetDirectoryName(path?.Replace('\\', '/'));
-            return dir is null ? path : path?.Substring(0, dir.Length);
-        }
-
         void IBuildActions.WriteAllText(string filename, string contents)
         {
         }
@@ -164,18 +153,6 @@ namespace Semmle.Autobuild.Cpp.Tests
                 s = s.Replace($"%{kvp.Key}%", kvp.Value);
             return s;
         }
-
-        public void CreateDirectory(string path)
-        {
-            if (!CreateDirectories.Contains(path))
-                throw new ArgumentException($"Missing CreateDirectory, {path}");
-        }
-
-        public void DownloadFile(string address, string fileName)
-        {
-            if (!DownloadFiles.Contains((address, fileName)))
-                throw new ArgumentException($"Missing DownloadFile, {address}, {fileName}");
-        }
     }
 
     /// <summary>
@@ -236,7 +213,6 @@ namespace Semmle.Autobuild.Cpp.Tests
             Actions.GetEnvironmentVariable[$"CODEQL_EXTRACTOR_{codeqlUpperLanguage}_SOURCE_ARCHIVE_DIR"] = "";
             Actions.GetEnvironmentVariable[$"CODEQL_EXTRACTOR_{codeqlUpperLanguage}_ROOT"] = $@"C:\codeql\{codeqlUpperLanguage.ToLowerInvariant()}";
             Actions.GetEnvironmentVariable["CODEQL_JAVA_HOME"] = @"C:\codeql\tools\java";
-            Actions.GetEnvironmentVariable["CODEQL_PLATFORM"] = "win64";
             Actions.GetEnvironmentVariable["SEMMLE_DIST"] = @"C:\odasa";
             Actions.GetEnvironmentVariable["SEMMLE_JAVA_HOME"] = @"C:\odasa\tools\java";
             Actions.GetEnvironmentVariable["SEMMLE_PLATFORM_TOOLS"] = @"C:\odasa\tools";
@@ -297,8 +273,7 @@ namespace Semmle.Autobuild.Cpp.Tests
         [Fact]
         public void TestCppAutobuilderSuccess()
         {
-            Actions.RunProcess[@"cmd.exe /C nuget restore C:\Project\test.sln -DisableParallelProcessing"] = 1;
-            Actions.RunProcess[@"cmd.exe /C C:\Project\.nuget\nuget.exe restore C:\Project\test.sln -DisableParallelProcessing"] = 0;
+            Actions.RunProcess[@"cmd.exe /C C:\odasa\tools\csharp\nuget\nuget.exe restore C:\Project\test.sln"] = 1;
             Actions.RunProcess[@"cmd.exe /C CALL ^""C:\Program Files ^(x86^)\Microsoft Visual Studio 14.0\VC\vcvarsall.bat^"" && set Platform=&& type NUL && C:\odasa\tools\odasa index --auto msbuild C:\Project\test.sln /p:UseSharedCompilation=false /t:rebuild /p:Platform=""x86"" /p:Configuration=""Release"" /p:MvcBuildViews=true"] = 0;
             Actions.RunProcessOut[@"C:\Program Files (x86)\Microsoft Visual Studio\Installer\vswhere.exe -prerelease -legacy -property installationPath"] = "";
             Actions.RunProcess[@"C:\Program Files (x86)\Microsoft Visual Studio\Installer\vswhere.exe -prerelease -legacy -property installationPath"] = 1;
@@ -311,13 +286,11 @@ namespace Semmle.Autobuild.Cpp.Tests
             Actions.FileExists[@"C:\Program Files (x86)\Microsoft Visual Studio\Installer\vswhere.exe"] = true;
             Actions.EnumerateFiles[@"C:\Project"] = "foo.cs\ntest.slx";
             Actions.EnumerateDirectories[@"C:\Project"] = "";
-            Actions.CreateDirectories.Add(@"C:\Project\.nuget");
-            Actions.DownloadFiles.Add(("https://dist.nuget.org/win-x86-commandline/latest/nuget.exe", @"C:\Project\.nuget\nuget.exe"));
 
             var autobuilder = CreateAutoBuilder(true);
             var solution = new TestSolution(@"C:\Project\test.sln");
             autobuilder.ProjectsOrSolutionsToBuild.Add(solution);
-            TestAutobuilderScript(autobuilder, 0, 3);
+            TestAutobuilderScript(autobuilder, 0, 2);
         }
     }
 }

cpp/autobuilder/Semmle.Autobuild.Cpp.Tests/Semmle.Autobuild.Cpp.Tests.csproj

@@ -2,7 +2,7 @@
 
   <PropertyGroup>
     <OutputType>Exe</OutputType>
-    <TargetFramework>net6.0</TargetFramework>
+    <TargetFramework>netcoreapp3.0</TargetFramework>
     <GenerateAssemblyInfo>false</GenerateAssemblyInfo>
     <RuntimeIdentifiers>win-x64;linux-x64;osx-x64</RuntimeIdentifiers>
     <Nullable>enable</Nullable>

cpp/autobuilder/Semmle.Autobuild.Cpp/Semmle.Autobuild.Cpp.csproj

@@ -1,7 +1,7 @@
 <Project Sdk="Microsoft.NET.Sdk">
 
   <PropertyGroup>
-    <TargetFramework>net6.0</TargetFramework>
+    <TargetFramework>netcoreapp3.0</TargetFramework>
     <AssemblyName>Semmle.Autobuild.Cpp</AssemblyName>
     <RootNamespace>Semmle.Autobuild.Cpp</RootNamespace>
     <ApplicationIcon />
@@ -17,7 +17,7 @@
   </ItemGroup>
 
   <ItemGroup>
-    <PackageReference Include="Microsoft.Build" Version="16.11.0" />
+    <PackageReference Include="Microsoft.Build" Version="16.0.461" />
   </ItemGroup>
 
   <ItemGroup>

cpp/config/suites/c/correctness

@@ -31,7 +31,6 @@
 + semmlecode-cpp-queries/Critical/NewArrayDeleteMismatch.ql: /Correctness/Common Errors
 + semmlecode-cpp-queries/Critical/NewDeleteArrayMismatch.ql: /Correctness/Common Errors
 + semmlecode-cpp-queries/Critical/NewFreeMismatch.ql: /Correctness/Common Errors
-+ semmlecode-cpp-queries/Likely Bugs/Memory Management/UsingExpiredStackAddress.ql: /Correctness/Common Errors
   # Use of Libraries
 + semmlecode-cpp-queries/Likely Bugs/Memory Management/SuspiciousCallToMemset.ql: /Correctness/Use of Libraries
 + semmlecode-cpp-queries/Likely Bugs/Memory Management/SuspiciousSizeof.ql: /Correctness/Use of Libraries

cpp/config/suites/cpp/correctness

@@ -9,8 +9,6 @@
 + semmlecode-cpp-queries/Likely Bugs/Conversion/CastArrayPointerArithmetic.ql: /Correctness/Dangerous Conversions
 + semmlecode-cpp-queries/Likely Bugs/Underspecified Functions/MistypedFunctionArguments.ql: /Correctness/Dangerous Conversions
 + semmlecode-cpp-queries/Security/CWE/CWE-253/HResultBooleanConversion.ql: /Correctness/Dangerous Conversions
-+ semmlecode-cpp-queries/Likely Bugs/OO/UnsafeUseOfThis.ql: /Correctness/Dangerous Conversions
-+ semmlecode-cpp-queries/Security/CWE/CWE-191/UnsignedDifferenceExpressionComparedZero.ql: /Correctness/Dangerous Conversions
   # Consistent Use
 + semmlecode-cpp-queries/Critical/ReturnValueIgnored.ql: /Correctness/Consistent Use
 + semmlecode-cpp-queries/Likely Bugs/InconsistentCheckReturnNull.ql: /Correctness/Consistent Use
@@ -34,7 +32,6 @@
 + semmlecode-cpp-queries/Critical/NewArrayDeleteMismatch.ql: /Correctness/Common Errors
 + semmlecode-cpp-queries/Critical/NewDeleteArrayMismatch.ql: /Correctness/Common Errors
 + semmlecode-cpp-queries/Critical/NewFreeMismatch.ql: /Correctness/Common Errors
-+ semmlecode-cpp-queries/Likely Bugs/Memory Management/UsingExpiredStackAddress.ql: /Correctness/Common Errors
   # Exceptions
 + semmlecode-cpp-queries/Best Practices/Exceptions/AccidentalRethrow.ql: /Correctness/Exceptions
 + semmlecode-cpp-queries/Best Practices/Exceptions/CatchingByValue.ql: /Correctness/Exceptions

cpp/config/suites/security/cwe-120

@@ -5,11 +5,9 @@
   @name Badly bounded write (CWE-120)
 + semmlecode-cpp-queries/Security/CWE/CWE-120/OverrunWrite.ql: /CWE/CWE-120
   @name Potentially overrunning write (CWE-120)
-+ semmlecode-cpp-queries/Security/CWE/CWE-120/VeryLikelyOverrunWrite.ql: /CWE/CWE-120
-  @name Likely overrunning write
 + semmlecode-cpp-queries/Security/CWE/CWE-120/OverrunWriteFloat.ql: /CWE/CWE-120
   @name Potentially overrunning write with float to string conversion (CWE-120)
 + semmlecode-cpp-queries/Best Practices/Likely Errors/OffsetUseBeforeRangeCheck.ql: /CWE/CWE-120
   @name Array offset used before range check (CWE-120)
 + semmlecode-cpp-queries/Likely Bugs/Memory Management/UnsafeUseOfStrcat.ql: /CWE/CWE-120
-  @name Potentially unsafe use of strcat (CWE-120)
+    @name Potentially unsafe use of strcat (CWE-120)

cpp/downgrades/19e31bf071f588bb7efd1e4d5a185ce4f6fbbd84/upgrade.properties

@@ -1,3 +0,0 @@
-description: Add relation for tracking C++ braced initializers
-compatibility: full
-braced_initialisers.rel: delete

cpp/downgrades/2cd420191e5f782589b4e4efb70127de265390dd/upgrade.properties

@@ -1,2 +0,0 @@
-description: Remove unused legacy relations
-compatibility: backwards

cpp/downgrades/BUILD.bazel

@@ -1,12 +0,0 @@
-load("@rules_pkg//:mappings.bzl", "pkg_files", "strip_prefix")
-
-pkg_files(
-    name = "downgrades",
-    srcs = glob(
-        ["**"],
-        exclude = ["BUILD.bazel"],
-    ),
-    prefix = "cpp/downgrades",
-    strip_prefix = strip_prefix.from_pkg(),
-    visibility = ["//cpp:__pkg__"],
-)

cpp/downgrades/bb0f279f2acd793105a347d589b5afc8715d94c4/upgrade.properties

@@ -1,3 +0,0 @@
-description: Add relation for tracking variables from structured binding declarations
-compatibility: full
-is_structured_binding.rel: delete

cpp/downgrades/cf72c8898d19eb1b3374432cf79d8276cb07ad43/exprparents.ql

@@ -1,21 +0,0 @@
-class Element extends @element {
-  string toString() { none() }
-}
-
-class Expr extends @expr {
-  string toString() { none() }
-}
-
-class Stmt extends @stmt {
-  string toString() { none() }
-}
-
-predicate isStmtWithInitializer(Stmt stmt) {
-  exists(int kind | stmts(stmt, kind, _) | kind = 2 or kind = 11 or kind = 35)
-}
-
-from Expr child, int index, int index_new, Element parent
-where
-  exprparents(child, index, parent) and
-  if isStmtWithInitializer(parent) then index_new = index - 1 else index_new = index
-select child, index_new, parent

cpp/downgrades/cf72c8898d19eb1b3374432cf79d8276cb07ad43/stmtparents.ql

@@ -1,22 +0,0 @@
-class Element extends @element {
-  string toString() { none() }
-}
-
-class Stmt extends @stmt {
-  string toString() { none() }
-}
-
-predicate isStmtWithInitializer(Stmt stmt) {
-  exists(int kind | stmts(stmt, kind, _) | kind = 2 or kind = 11 or kind = 35)
-}
-
-from Stmt child, int index, int index_new, Element parent
-where
-  stmtparents(child, index, parent) and
-  (
-    not isStmtWithInitializer(parent)
-    or
-    index > 0
-  ) and
-  if isStmtWithInitializer(parent) then index_new = index - 1 else index_new = index
-select child, index_new, parent

cpp/downgrades/cf72c8898d19eb1b3374432cf79d8276cb07ad43/upgrade.properties

@@ -1,6 +0,0 @@
-description: Support C++17 if and switch initializers
-compatibility: partial
-if_initialization.rel: delete
-switch_initialization.rel: delete
-exprparents.rel: run exprparents.qlo
-stmtparents.rel: run stmtparents.qlo

cpp/downgrades/e9a518baf14f4322ac243578a8e1391386ff030f/upgrade.properties

@@ -1,2 +0,0 @@
-description: Remove uniqueness constraint from the uuid property
-compatibility: full

cpp/downgrades/qlpack.yml

@@ -1,4 +0,0 @@
-name: codeql/cpp-downgrades
-groups: cpp
-downgrades: .
-library: true

cpp/old-change-notes/2020-09-29-range-analysis-rollup.md

@@ -1,14 +0,0 @@
-lgtm,codescanning
-* The `SimpleRangeAnalysis` library has gained support for several language
-  constructs it did not support previously. These improvements primarily affect
-  the queries `cpp/constant-comparison`, `cpp/comparison-with-wider-type`, and
-  `cpp/integer-multiplication-cast-to-long`. The newly supported language
-  features are:
-    * Multiplication of unsigned numbers.
-    * Multiplication by a constant.
-    * Reference-typed function parameters.
-    * Comparing a variable not equal to an endpoint of its range, thus narrowing the range by one.
-    * Using `if (x)` or `if (!x)` or similar to test for equality to zero.
-* The `SimpleRangeAnalysis` library can now be extended with custom rules. See
-  examples in
-  `cpp/ql/src/experimental/semmle/code/cpp/rangeanalysis/extensions/`.

cpp/old-change-notes/2020-10-21-erroneous-types.md

@@ -1,2 +0,0 @@
-lgtm,codescanning
-* The `cpp/wrong-type-format-argument` and `cpp/non-portable-printf` queries have been hardened so that they do not produce nonsensical results on databases that contain errors (specifically the `ErroneousType`).

cpp/old-change-notes/2020-10-21-size-check-queries.md

@@ -1,2 +0,0 @@
-lgtm,codescanning
-* The 'Not enough memory allocated for pointer type' (cpp/allocation-too-small) and 'Not enough memory allocated for array of pointer type' (cpp/suspicious-allocation-size) queries have been improved. Previously some allocations would be reported by both queries, this no longer occurs. In addition more allocation functions are now understood by both queries.

cpp/old-change-notes/2020-11-02-unused-local-variable.md

@@ -1,2 +0,0 @@
-lgtm,codescanning
-* Two issues causing the 'Unused local variable' query (`cpp/unused-local-variable`) to produce false positive results have been fixed.

cpp/old-change-notes/2020-11-05-formatting-function.md

@@ -1,4 +0,0 @@
-lgtm,codescanning
-* `FormattingFunction.getOutputParameterIndex` now has a parameter identifying whether the output at that index is a buffer or a stream.
-* `FormattingFunction` now has a predicate `isOutputGlobal` indicating when the output is to a global stream.
-* The `primitiveVariadicFormatter` and `variadicFormatter` predicates have more parameters exposing information about the function.

cpp/old-change-notes/2020-11-05-private-models.md

@@ -1,3 +0,0 @@
-lgtm,codescanning
-* Various classes in `semmle.code.cpp.models.implementations` have been made private. Users should not depend on library implementation details.
-* The `OperatorNewAllocationFunction`, `OperatorDeleteDeallocationFunction`, `Iterator` and `Snprintf` classes now have interfaces in `semmle.code.cpp.models.interfaces`.

cpp/old-change-notes/2020-11-12-unsafe-use-of-this.md

@@ -1,2 +0,0 @@
-lgtm,codescanning
-* A new query (`cpp/unsafe-use-of-this`) has been added. The query finds pure virtual function calls whose qualifier is an object under construction.

cpp/old-change-notes/2020-11-27-downgrade-to-recommendation.md

@@ -1,2 +0,0 @@
-lgtm,codescanning
-* The queries `cpp/local-variable-hides-global-variable` and `cpp/missing-header-guard` now have severity `recommendation` instead of `warning`.

cpp/old-change-notes/2021-02-04-unsigned-difference-expression-compared-zero.md

@@ -1,2 +0,0 @@
-lgtm
-* A new query (`cpp/unsigned-difference-expression-compared-zero`) is run but not yet displayed on LGTM. The query finds unsigned subtractions used in relational comparisons with the value 0. This query was originally submitted as an experimental query by @ihsinme in https://github.com/github/codeql/pull/4745.

cpp/old-change-notes/2021-02-24-memset-may-be-deleted.md

@@ -1,2 +0,0 @@
-lgtm,codescanning
-* A new query (`cpp/memset-may-be-deleted`) is added to the default query suite. The query finds calls to `memset` that may be removed by the compiler. This behavior can make information-leak vulnerabilities easier to exploit. This query was originally [submitted as an experimental query by @ihsinme](https://github.com/github/codeql/pull/4953).

cpp/old-change-notes/2021-03-01-fluent-interface-data-flow.md

@@ -1,2 +0,0 @@
-lgtm,codescanning
-* The data-flow library now recognises more side-effects of method chaining (e.g. `someObject.setX(clean).setY(tainted).setZ...` having a side-effect on `someObject`), as well as other related circumstances where a function input is directly passed to its output. All queries that use data-flow analysis, including most security queries, may return more results accordingly.