codeql-javascript-multiflow/README.org

* SQL injection example
  The primary purpose of this material is to serve as an introduction to CodeQL
  for Python.
  The section [[*Reading Order][Reading Order]] describes the basic CodeQL queries to go through.

  The Python code is intentionally trivial and mirrors the structure of production
  code.  Further, the steps needed for [[*CodeQL setup][CodeQL setup]] in production CI/CD pipelines
  have identical structure to the one shown here.

  Thus, it is expedient to illustrate intermediate and advanced topics here as
  well.  The section [[*Additional Topics][Additional Topics]] does this by illustrating descriptions from
  the CodeQL documentation using the Python code in this repository.
  Thus, the [[*Additional Topics][Additional Topics]] serve as additional examples to parts of the
  documentation. 
  These additional topics should be read in the order of appearance.

  For system administration and devops, the section [[*CodeQL setup][CodeQL setup]] provides a
  rudimentary guide.

** Node setup and Running Sequence
   #+BEGIN_SRC sh 
     npm i sqlite3

     node add-user.js

     ./admin  -c
     ./admin  -s

     echo frank | node add-user.js

     ./admin  -s

     echo 'Johnny"); DROP TABLE users; --' | node add-user.js

     ./admin  -s

   #+END_SRC

** CodeQL setup
   It's best to have a full development setup for CodeQL on your laptop/desktop.
   This requires you to 
   1. download VS Code

   2. install the CodeQL extension.  Instructions on how to do that found here:
      https://codeql.github.com/docs/codeql-for-visual-studio-code/setting-up-codeql-in-visual-studio-code/

   3. install a CodeQL binary (containing CodeQL CLI) for whichever platform
      you are on and unpack that

      The binary for 2.13.5 is found here:
      https://github.com/github/codeql-cli-binaries/releases/tag/v2.13.5

      See script below.

   4. (recommended for browsing) Install the codeql standard library matching the
      binary version.  This is not needed to write or run queries anymore, but the
      library has many examples and searching it is much easier after extracting
      this archive:
      https://github.com/github/codeql/releases/tag/codeql-cli%2Fv2.13.5

      See script below.

   5. clone this repository.
      #+BEGIN_SRC sh :session shared :results output 
        mkdir ~/local && cd ~/local && \
            git clone https://github.com/hohn/codeql-dataflow-sql-injection-python.git
      #+END_SRC

   6. open the workspace directory in VS Code.  This should just be
      #+BEGIN_SRC sh :session shared :results output 
        cd ~/local/codeql-dataflow-sql-injection-python
        code python-sqli.code-workspace
      #+END_SRC

   7. add the downloaded CodeQL CLI to the VS Code's search path.  Find the CodeQL
      extension settings, then paste the full path to the CodeQL CLI into the
      : Code QL > Cli: Executable Path 
      field.

   8. install the pack dependencies for the CLI.  In a shell, use
       #+BEGIN_SRC sh
         cd ~/local/codeql-dataflow-sql-injection-python
         codeql pack install
       #+END_SRC

   9. install the pack dependencies VS Code.  Do this via
      : command palette
      and then select all listed by
      : CodeQL: Install Pack Dependencies 

      It will generate a =codeql-pack.lock.yml= file.

   10. use the following to build a CodeQL database.
       #+BEGIN_SRC sh
         #* Build the db with source commit id.
         codeql --version
         : CodeQL command-line toolchain release 2.13.5.

         cd ~/local/codeql-dataflow-sql-injection-python

         DB=./python-sqli-db-$(git rev-parse --short HEAD)

         echo $DB
         test -d "$DB" && rm -fR "$DB"
         mkdir -p "$DB"

         codeql database create --language=python -s . -j 8 -v $DB
       #+END_SRC

   11. add the database to the editor.  To do this there is a widget on the left
       side of editor that looks like QL and after selecting that, there is a
       databases panel. There are options to select from archive or folder. Select
       the "from folder" option and add the "database" folders you created above.

   12. open the query =trivial.ql= and run it via
       : right click > run query on selected database
   
   There are several ways to install the CodeQL binaries and libraries.  Here is a
   shell script to do it one way

   #+BEGIN_SRC sh :session shared :results output 
     # grab -- retrieve and extract codeql cli and library
     # Usage: grab version platform prefix
     grab() {
         version=$1; shift
         platform=$1; shift
         prefix=$1; shift
         mkdir -p $prefix/codeql-$version &&
             cd $prefix/codeql-$version || return

         # Get cli
         wget "https://github.com/github/codeql-cli-binaries/releases/download/$version/codeql-$platform.zip"
         # Get lib
         wget "https://github.com/github/codeql/archive/refs/tags/codeql-cli/$version.zip"
         # Fix attributes
         if [ `uname` = Darwin ] ; then
             xattr -c *.zip
         fi
         # Extract
         unzip -q codeql-$platform.zip
         unzip -q $version.zip
         # Rename library directory for VS Code
         mv codeql-codeql-cli-$version/ ql
         # remove archives?
         # rm codeql-$platform.zip
         # rm $version.zip
     }    

     # Try:
     grab v2.13.5 osx64 $HOME/local/xefm

     grab v2.13.5 linux64 $HOME/local/xefm

     ls $HOME/local/xefm/codeql-v2.13.5/
     : codeql/  codeql-osx64.zip  ql/  v2.13.5.zip
   #+END_SRC

** Sample Application Setup and Run
   Execute the following in a bourne-style shell, one block at a time to see
   results.  This requires a working Python installation and a POSIX shell.

   #+BEGIN_SRC sh
     # Prepare db
     ./admin -r
     ./admin -c
     ./admin -s 

     # Add regular user
     ./add-user.py 2>> log
     First User

     # Check
     ./admin -s

     # Add Johnny Droptable 
     ./add-user.py 2>> log
     Johnny'); DROP TABLE users; --

     # See the problem:
     ./admin -s

     # Check the log
     tail log
   #+END_SRC

** Reading Order
   The queries introduce CodeQL concepts and should be read bottom-up in this
   order:
   1. =source.ql=: introduces Value, ControlFlowNode and DataFlow::Node.
   2. =sink.ql=: introduces AstNode.
   3. =TaintFlowTemplate.ql=: introduce the taint flow template.
   4. =TaintFlow.ql=: taint flow with endpoints only, using a class.  This is the
      old way, but it still works and is a good introduction to /using/ classes --
      not /writing/ them.
   5. =TaintFlowPath.ql=: taint flow with full path.  Again, the old way.
   6. =TaintFlowWithModule.ql=: taint flow with endpoints only, using modules.
      The way forward.
   7. =TaintFlowPathQueryWithModule.ql=: taint flow with full path, using modules.

** Note on the Python code
   The Python call 
   : conn.execute(query)
   to sqlite3 only allows one statement and produces an exception:
   : sqlite3.Warning: You can only execute one statement at a time.
   This makes it safer than the raw
   : sqlite3_exec() 
   or Python's
   : conn.executescript
   
   For this tutorial, we use the multi-statement =executescript()= call.

* Additional Topics
  This repository and its source code are used to illustrate some additional
  topics from the CodeQL Python documentation.
  
** Dataflow in Python
   https://codeql.github.com/docs/codeql-language-guides/analyzing-data-flow-in-python/ 

   Using and extending the CodeQL standard library:
   - StdLibPlain.ql
     Illustrates using the CodeQL standard library's
     : RemoteFlowSource 
   - StdLibExt.ql
     Illustrates extension of the CodeQL standard library via
     : class SqlAccess extends FileSystemAccess::Range ...
     and
     : class TerminalInput extends RemoteFlowSource::Range ...

   Various data flow / taint flow examples from the documentation, modified as
   needed: 
   - using-local-data-flow.ql
   - using-local-sources.ql
   - using-local-taint-tracking.ql

** API graphs
   https://codeql.github.com/docs/codeql-language-guides/using-api-graphs-in-python/

   API graphs are a uniform interface for referring to functions, classes, and methods defined in external libraries.

   - =ApiGraphs.ql=:  various sample queries

** Type Tracking
   Documentation for JavaScript, also applicable here:
   https://codeql.github.com/docs/codeql-language-guides/using-type-tracking-for-api-modeling/#using-type-tracking-for-api-modeling

   The files
   - sqlite-info.py  
   - TypeTracking.ql
   use type tracking.  From the docs: You can track data through an API by
   creating a model using the CodeQL type-tracking library.  The type-tracking
   library makes it possible to track values through properties and function
   calls.

   The file
   - =TypeTrackingWithData.ql=
   goes further.  From the docs: The type-tracking library makes it possible to
   track values through properties and function calls.  Here, we also track some
   associated data.  See
   https://codeql.github.com/docs/codeql-language-guides/using-type-tracking-for-api-modeling/#tracking-associated-data
   
** Flow State
   The query =TaintFlowPathQueryWithSanitizer.ql= illustrates using a flow-state
   representing whether user input has been sanitized.

   It introduces [[https://codeql.github.com/docs/ql-language-reference/types/#algebraic-datatypes][ADT]]s via the =newtype= declaration of =TInputSanitizationState=.