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Switch from pip venv to uv

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michael hohn
2025-11-26 19:21:48 -08:00
committed by =michael hohn
parent fe026416c5
commit bb2d9797db
6 changed files with 572 additions and 25 deletions
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28
README.org
View File

@@ -1,17 +1,18 @@
* Introduction to hepc -- HTTP End Point for CodeQL
** Usage Sample
#+BEGIN_SRC sh
cd ~/work-gh/mrva/mrvahepc
uv sync # one-time install; uv-run shebangs avoid manual activation
# Collect DBs from filesystem
cd ~/work-gh/mrva/mrvahepc && rm -fR db-collection.tmp/
export MRVA_HEPC_ENDPOINT=http://hepc
./bin/mc-hepc-init --db_collection_dir db-collection.tmp \
--starting_path ~/work-gh/mrva/mrva-open-source-download \
--starting_path ~/work-gh/mrva/mrva-open-source-download/ \
--max_dbs 17
# Serve collected DBs plus metadata
cd ~/work-gh/mrva/mrvahepc
. venv/bin/activate
./bin/mc-hepc-serve --codeql-db-dir db-collection.tmp
# Test server
@@ -30,24 +31,23 @@
#+END_SRC
** Installation
- Set up the virtual environment and install tools
- Use [[https://docs.astral.sh/uv/][uv]] to install dependencies without manually activating a venv
#+begin_example
cd ~/work-gh/mrva/mrvahepc
python3.11 -m venv venv
source venv/bin/activate
pip install --upgrade pip
# From requirements.txt
pip install -r requirements.txt
uv sync
#+end_example
=uv sync= installs everything declared in =pyproject.toml= into a managed
=.venv= and caches the wheels; the =bin/= scripts already use
=uv run= in their shebangs, so you can execute them directly.
- Local development
#+begin_example
cd ~/work-gh/mrva/mrvahepc
source venv/bin/activate
pip install --editable .
uv sync
uv pip install --editable .
#+end_example
The `--editable` *should* use symlinks for all scripts; use `./bin/*` to be sure.
The =--editable= install is optional; use =./bin/*= directly to avoid
relying on entry points in your shell.
- Full installation
#+begin_example
@@ -58,4 +58,4 @@
The best way to examine the code is starting from the high-level scripts
in =bin/=.

3
bin/mc-hepc-init
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@@ -1,9 +1,10 @@
#!/usr/bin/env python3
#!/usr/bin/env -S uv run python
import json
import hashlib
import yaml
import sys
import os
from plumbum import cli, local
from plumbum.cmd import find, mkdir, cp, rm, mktemp, unzip, date, env

2
bin/mc-hepc-serve
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@@ -1,4 +1,4 @@
#!/usr/bin/env python3
#!/usr/bin/env -S uv run python
import logging
from pathlib import Path
from plumbum import cli

47
pyproject.toml Normal file
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@@ -0,0 +1,47 @@
[build-system]
requires = ["setuptools>=68", "wheel"]
build-backend = "setuptools.build_meta"
[project]
name = "mrvahepc"
version = "0.1.0"
description = "HTTP End Point for CodeQL databases"
readme = {file = "README.org", content-type = "text/plain"}
authors = [{name = "Michael Hohn", email = "hohn@github.com"}]
license = {file = "LICENSE"}
requires-python = ">=3.11"
dependencies = [
"annotated-types==0.7.0",
"anyio==4.7.0",
"asttokens==3.0.0",
"click==8.1.7",
"decorator==5.1.1",
"executing==2.1.0",
"fastapi==0.115.6",
"h11==0.14.0",
"idna==3.10",
"ipython==8.30.0",
"jedi==0.19.2",
"matplotlib-inline==0.1.7",
"parso==0.8.4",
"pexpect==4.9.0",
"plumbum==1.9.0",
"prompt_toolkit==3.0.48",
"ptyprocess==0.7.0",
"pure_eval==0.2.3",
"pydantic==2.10.3",
"pydantic_core==2.27.1",
"Pygments==2.18.0",
"PyYAML==6.0.2",
"sniffio==1.3.1",
"stack-data==0.6.3",
"starlette==0.41.3",
"traitlets==5.14.3",
"typing_extensions==4.12.2",
"uvicorn==0.34.0",
"wcwidth==0.2.13",
]
[tool.setuptools]
packages = ["mrvahepc"]
script-files = ["bin/mc-hepc-init", "bin/mc-hepc-serve"]

29
setup.py
View File

@@ -1,13 +1,24 @@
from pathlib import Path
import tomllib
from setuptools import setup, find_packages
import glob
def load_dependencies() -> list[str]:
"""Read the dependency list directly from pyproject.toml for consistency."""
pyproject_path = Path(__file__).with_name("pyproject.toml")
if not pyproject_path.exists():
return []
data = tomllib.loads(pyproject_path.read_text())
return data.get("project", {}).get("dependencies", [])
setup(
name='mrvahepc',
version='0.1.0',
description='A Python package for serving CodeQL databases',
author='Michael Hohn',
author_email='hohn@github.com',
packages=['mrvahepc'],
install_requires=[],
scripts=glob.glob("bin/mc-*"),
name="mrvahepc",
version="0.1.0",
description="A Python package for serving CodeQL databases",
author="Michael Hohn",
author_email="hohn@github.com",
packages=find_packages(),
install_requires=load_dependencies(),
scripts=["bin/mc-hepc-init", "bin/mc-hepc-serve"],
)

488
uv.lock generated Normal file
View File

@@ -0,0 +1,488 @@
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