[jhelie] use experimental ATM ML model boring nutmeg

Co-authored-by: Henry Mercer <henrymercer@github.com>

.bazelrc

@@ -1,9 +1,3 @@
-common --enable_platform_specific_config
-
-build --repo_env=CC=clang --repo_env=CXX=clang++
-
-build:linux --cxxopt=-std=c++20
-build:macos --cxxopt=-std=c++20 --cpu=darwin_x86_64
-build:windows --cxxopt=/std:c++20 --cxxopt=/Zc:preprocessor
+build --repo_env=CC=clang --repo_env=CXX=clang++ --copt="-std=c++17"
 
 try-import %workspace%/local.bazelrc

.bazelversion

@@ -1 +1 @@
-6.1.2
+5.0.0

.devcontainer/devcontainer.json

@@ -1,6 +1,6 @@
 {
   "extensions": [
-    "rust-lang.rust-analyzer",
+    "rust-lang.rust",
     "bungcip.better-toml",
     "github.vscode-codeql",
     "hbenl.vscode-test-explorer",

.git-blame-ignore-revs

@@ -1,21 +0,0 @@
-# .git-blame-ignore-revs
-# Auto-formatted Java
-730eae952139209fe9fdf598541d608f4c0c0c84
-# Auto-formatted C#
-5ad7ed49dd3de03ec6dcfcb6848758a6a987e11c
-# Auto-formatted C/C++
-ef97e539ec1971494d4bba5cafe82e00bc8217ac
-# Auto-formatted Python
-21d5fa836b3a7d020ba45e8b8168b145a9772131
-# Auto-formatted JavaScript
-8d97fe9ed327a9546ff2eaf515cf0f5214deddd9
-# Auto-formatted Ruby
-a5d229903d2f12d45f2c2c38822f1d0e7504ae7f
-# Auto-formatted Go
-08c658e66bf867090033ea096e244a93d46c0aa7
-# Auto-formatted Swift
-711d7057f79fb7d72fc3b35e010bd018f9009169
-# Auto-formatted shared ql packs
-3640b6d3a8ce9edf8e1d3ed106fe8526cf255bc0
-# Auto-formatted taint tracking files
-159d8e978c51959b380838c080d891b66e763b19

.github/ISSUE_TEMPLATE/lgtm-com---false-positive.md

@@ -0,0 +1,24 @@
+---
+name: LGTM.com - false positive
+about: Tell us about an alert that shouldn't be reported
+title: LGTM.com - false positive
+labels: false-positive
+assignees: ''
+
+---
+
+**Description of the false positive**
+
+<!-- Please explain briefly why you think it shouldn't be included. -->
+
+**URL to the alert on the project page on LGTM.com**
+
+<!--
+1. Open the project on LGTM.com.
+For example, https://lgtm.com/projects/g/pallets/click/.
+2. Switch to the `Alerts` tab. For example, https://lgtm.com/projects/g/pallets/click/alerts/.
+3. Scroll to the alert that you would like to report.
+4. Click on the right most icon `View this alert within the complete file`.
+5. A new browser tab opens. Copy and paste the page URL here.
+For example, https://lgtm.com/projects/g/pallets/click/snapshot/719fb7d8322b0767cdd1e5903ba3eb3233ba8dd5/files/click/_winconsole.py#xa08d213ab3289f87:1.
+-->

.github/ISSUE_TEMPLATE/ql---general.md

@@ -10,5 +10,5 @@ assignees: ''
 **Description of the issue**
 
 <!-- Please explain briefly what is the problem.
-If it is about a GitHub project, please include its URL. -->
+If it is about an LGTM project, please include its URL.-->
 

.github/ISSUE_TEMPLATE/ql--false-positive.md

@@ -1,36 +0,0 @@
----
-name: CodeQL false positive
-about: Report CodeQL alerts that you think should not have been detected (not applicable, not exploitable, etc.)
-title: False positive
-labels: false-positive
-assignees: ''
-
----
-
-**Description of the false positive**
-
-<!-- Please explain briefly why you think it shouldn't be included. -->
-
-**Code samples or links to source code**
-
-<!--
-For open source code: file links with line numbers on GitHub, for example:
-https://github.com/github/codeql/blob/dc440aaee6695deb0d9676b87e06ea984e1b4ae5/javascript/ql/test/query-tests/Security/CWE-078/CommandInjection/exec-sh2.js#L10
-
-For closed source code: (redacted) code samples that illustrate the problem, for example:
-
-```
-function execSh(command, options) {
-    return cp.spawn(getShell(), ["-c", command], options) // <- command line injection
-};
-```
--->
-
-**URL to the alert on GitHub code scanning (optional)**
-
-<!--
-1. Open the project on GitHub.com.
-2. Switch to the `Security` tab.
-3. Browse to the alert that you would like to report.
-4. Copy and paste the page URL here.
--->

.github/actions/cache-query-compilation/action.yml

@@ -1,149 +0,0 @@
-name: Cache query compilation
-description: Caches CodeQL compilation caches - should be run both on PRs and pushes to main.
-
-inputs:
-  key:
-    description: 'The cache key to use - should be unique to the workflow'
-    required: true
-
-outputs:
-  cache-dir:
-    description: "The directory where the cache was stored"
-    value: ${{ steps.output-compilation-dir.outputs.compdir }}
-
-runs:
-  using: composite
-  steps:
-    # calculate the merge-base with main, in a way that works both on PRs and pushes to main.
-    - name: Calculate merge-base
-      shell: bash
-      if: ${{ github.event_name == 'pull_request' }}
-      env:
-        BASE_BRANCH: ${{ github.base_ref }}
-      run: |
-        MERGE_BASE=$(git cat-file commit $GITHUB_SHA | grep '^parent ' | head -1 | cut -f 2 -d " ")
-        echo "merge_base=$MERGE_BASE" >> $GITHUB_ENV
-    - name: Restore cache (PR)
-      if: ${{ github.event_name == 'pull_request' }}
-      uses: actions/cache/restore@v3
-      with:
-        path: |
-          **/.cache
-          ~/.codeql/compile-cache
-        key: codeql-compile-${{ inputs.key }}-pr-${{ github.sha }}
-        restore-keys: |
-          codeql-compile-${{ inputs.key }}-${{ github.base_ref }}-${{ env.merge_base }}
-          codeql-compile-${{ inputs.key }}-${{ github.base_ref }}-
-          codeql-compile-${{ inputs.key }}-main-
-    - name: Fill cache (only branch push)
-      if: ${{ github.event_name != 'pull_request' }}
-      uses: actions/cache@v3
-      with:
-        path: |
-          **/.cache
-          ~/.codeql/compile-cache
-        key: codeql-compile-${{ inputs.key }}-${{ github.ref_name }}-${{ github.sha }} # just fill on main
-        restore-keys: | # restore the latest cache if the exact cache is unavailable, to speed up compilation.
-          codeql-compile-${{ inputs.key }}-${{ github.ref_name }}-
-          codeql-compile-${{ inputs.key }}-main-
-    - name: Output-compilationdir
-      id: output-compilation-dir
-      shell: bash
-      run: |
-        echo "compdir=${COMBINED_CACHE_DIR}" >> $GITHUB_OUTPUT
-      env:
-        COMBINED_CACHE_DIR: ${{ runner.temp }}/compilation-dir
-    - name: Fill compilation cache directory
-      id: fill-compilation-dir
-      uses: actions/github-script@v6
-      env: 
-        COMBINED_CACHE_DIR: ${{ runner.temp }}/compilation-dir
-      with:
-        script: |
-          // # Move all the existing cache into another folder, so we only preserve the cache for the current queries.
-          // mkdir -p ${COMBINED_CACHE_DIR}
-          // rm -f **/.cache/{lock,size} # -f to avoid errors if the cache is empty.
-          // # copy the contents of the .cache folders into the combined cache folder.
-          // cp -r **/.cache/* ${COMBINED_CACHE_DIR}/ || : # ignore missing files
-          // # clean up the .cache folders
-          // rm -rf **/.cache/*
-
-          const fs = require("fs");
-          const path = require("path");
-          const os = require("os");
-
-          // the first argv is the cache folder to create.
-          const COMBINED_CACHE_DIR = process.env.COMBINED_CACHE_DIR;
-
-          function* walkCaches(dir) {
-            const files = fs.readdirSync(dir, { withFileTypes: true });
-            for (const file of files) {
-              if (file.isDirectory()) {
-                const filePath = path.join(dir, file.name);
-                yield* walkCaches(filePath);
-                if (file.name === ".cache") {
-                  yield filePath;
-                }
-              }
-            }
-          }
-
-          async function copyDir(src, dest) {
-            for await (const file of await fs.promises.readdir(src, { withFileTypes: true })) {
-              const srcPath = path.join(src, file.name);
-              const destPath = path.join(dest, file.name);
-              if (file.isDirectory()) {
-                if (!fs.existsSync(destPath)) {
-                  fs.mkdirSync(destPath);
-                }
-                await copyDir(srcPath, destPath);
-              } else {
-                await fs.promises.copyFile(srcPath, destPath);
-              }
-            }
-          }
-
-          async function main() {
-            const cacheDirs = [...walkCaches(".")];
-
-            for (const dir of cacheDirs) {
-              console.log(`Found .cache dir at ${dir}`);
-            }
-
-            const globalCacheDir = path.join(os.homedir(), ".codeql", "compile-cache");
-            if (fs.existsSync(globalCacheDir)) {
-              console.log("Found global home dir: " + globalCacheDir);
-              cacheDirs.push(globalCacheDir);
-            }
-
-            if (cacheDirs.length === 0) {
-              console.log("No cache dirs found");
-              return;
-            }
-
-            // mkdir -p ${COMBINED_CACHE_DIR}
-            fs.mkdirSync(COMBINED_CACHE_DIR, { recursive: true });
-
-            // rm -f **/.cache/{lock,size} # -f to avoid errors if the cache is empty.
-            await Promise.all(
-              cacheDirs.map((cacheDir) =>
-                (async function () {
-                  await fs.promises.rm(path.join(cacheDir, "lock"), { force: true });
-                  await fs.promises.rm(path.join(cacheDir, "size"), { force: true });
-                })()
-              )
-            );
-
-            // # copy the contents of the .cache folders into the combined cache folder.
-            // cp -r **/.cache/* ${COMBINED_CACHE_DIR}/ || : # ignore missing files
-            await Promise.all(
-              cacheDirs.map((cacheDir) => copyDir(cacheDir, COMBINED_CACHE_DIR))
-            );
-
-            // # clean up the .cache folders
-            // rm -rf **/.cache/*
-            await Promise.all(
-              cacheDirs.map((cacheDir) => fs.promises.rm(cacheDir, { recursive: true }))
-            );
-          }
-          main();

.github/actions/fetch-codeql/action.yml

@@ -1,24 +1,24 @@
 name: Fetch CodeQL
 description: Fetches the latest version of CodeQL
-
-inputs:
-  channel:
-    description: 'The CodeQL channel to use'
-    required: false
-    default: 'nightly'
-
 runs:
   using: composite
   steps:
+    - name: Select platform - Linux
+      if: runner.os == 'Linux'
+      shell: bash
+      run: echo "GA_CODEQL_CLI_PLATFORM=linux64" >> $GITHUB_ENV
+
+    - name: Select platform - MacOS
+      if: runner.os == 'MacOS'
+      shell: bash
+      run: echo "GA_CODEQL_CLI_PLATFORM=osx64" >> $GITHUB_ENV
+
     - name: Fetch CodeQL
       shell: bash
+      run: |
+        LATEST=$(gh release list --repo https://github.com/github/codeql-cli-binaries | cut -f 1 | grep -v beta | sort --version-sort | tail -1)
+        gh release download --repo https://github.com/github/codeql-cli-binaries --pattern codeql-$GA_CODEQL_CLI_PLATFORM.zip "$LATEST"
+        unzip -q -d "${RUNNER_TEMP}" codeql-$GA_CODEQL_CLI_PLATFORM.zip
+        echo "${RUNNER_TEMP}/codeql" >> "${GITHUB_PATH}"
       env:
         GITHUB_TOKEN: ${{ github.token }}
-        CHANNEL: ${{ inputs.channel }}
-      run: |
-        gh extension install github/gh-codeql
-        gh codeql set-channel "$CHANNEL"
-        gh codeql version
-        printf "CODEQL_FETCHED_CODEQL_PATH=" >> "${GITHUB_ENV}"
-        gh codeql version --format=json | jq -r .unpackedLocation >> "${GITHUB_ENV}"
-        gh codeql version --format=json | jq -r .unpackedLocation >> "${GITHUB_PATH}"

.github/actions/os-version/action.yml

@@ -1,32 +0,0 @@
-name: OS Version
-description: Get OS version.
-
-outputs:
-  version:
-    description: "OS version"
-    value: ${{ steps.version.outputs.version }}
-
-runs:
-  using: composite
-  steps:
-    - if: runner.os == 'Linux'
-      shell: bash
-      run: |
-        . /etc/os-release
-        echo "VERSION=${NAME} ${VERSION}" >> $GITHUB_ENV
-    - if: runner.os == 'Windows'
-      shell: powershell
-      run: |
-        $objects = systeminfo.exe /FO CSV | ConvertFrom-Csv
-        "VERSION=$($objects.'OS Name') $($objects.'OS Version')" >> $env:GITHUB_ENV
-    - if: runner.os == 'macOS'
-      shell: bash
-      run: |
-        echo "VERSION=$(sw_vers -productName) $(sw_vers -productVersion)" >> $GITHUB_ENV
-    - name: Emit OS version
-      id: version
-      shell: bash
-      run: |
-        echo "$VERSION"
-        echo "version=${VERSION}" >> $GITHUB_OUTPUT
-

.github/dependabot.yml

@@ -1,12 +1,19 @@
 version: 2
 updates:
   - package-ecosystem: "cargo"
-    directory: "ruby"
+    directory: "ruby/node-types"
     schedule:
       interval: "daily"
-
   - package-ecosystem: "cargo"
-    directory: "ql"
+    directory: "ruby/generator"
+    schedule:
+      interval: "daily"
+  - package-ecosystem: "cargo"
+    directory: "ruby/extractor"
+    schedule:
+      interval: "daily"
+  - package-ecosystem: "cargo"
+    directory: "ruby/autobuilder"
     schedule:
       interval: "daily"
 

.github/labeler.yml

@@ -11,7 +11,7 @@ Go:
   - change-notes/**/*go.*
 
 Java:
-  - any: [ 'java/**/*', '!java/kotlin-extractor/**/*', '!java/ql/test/kotlin/**/*' ]
+  - any: [ 'java/**/*', '!java/kotlin-extractor/**/*', '!java/kotlin-explorer/**/*', '!java/ql/test/kotlin/**/*' ]
   - change-notes/**/*java.*
 
 JS:
@@ -20,6 +20,7 @@ JS:
 
 Kotlin:
   - java/kotlin-extractor/**/*
+  - java/kotlin-explorer/**/*
   - java/ql/test/kotlin/**/*
 
 Python:
@@ -41,15 +42,3 @@ documentation:
 
 "QL-for-QL":
   - ql/**/*
-  - .github/workflows/ql-for-ql*
-
-# Since these are all shared files that need to be synced, just pick _one_ copy of each.
-"DataFlow Library":
-  - "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl.qll"
-  - "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImplCommon.qll"
-  - "java/ql/lib/semmle/code/java/dataflow/internal/tainttracking1/TaintTrackingImpl.qll"
-  - "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImplConsistency.qll"
-  - "java/ql/lib/semmle/code/java/dataflow/internal/FlowSummaryImpl.qll"
-
-"ATM":
-  - javascript/ql/experimental/adaptivethreatmodeling/**/*

.github/workflows/check-change-note.yml

@@ -8,7 +8,6 @@ on:
       - "*/ql/src/**/*.qll"
       - "*/ql/lib/**/*.ql"
       - "*/ql/lib/**/*.qll"
-      - "*/ql/lib/**/*.yml"
       - "!**/experimental/**"
       - "!ql/**"
       - ".github/workflows/check-change-note.yml"
@@ -26,9 +25,3 @@ jobs:
         run: |
           gh api 'repos/${{github.repository}}/pulls/${{github.event.number}}/files' --paginate --jq 'any(.[].filename ; test("/change-notes/.*[.]md$"))' |
           grep true -c
-      - name: Fail if the change note filename doesn't match the expected format. The file name must be of the form 'YYYY-MM-DD.md', 'YYYY-MM-DD-{title}.md', where '{title}' is arbitrary text, or released/x.y.z.md for released change-notes
-        env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-        run: |
-          gh api 'repos/${{github.repository}}/pulls/${{github.event.number}}/files' --paginate --jq '[.[].filename | select(test("/change-notes/.*[.]md$"))] | all(test("/change-notes/[0-9]{4}-[0-9]{2}-[0-9]{2}.*[.]md$") or test("/change-notes/released/[0-9]*[.][0-9]*[.][0-9]*[.]md$"))' |
-          grep true -c

.github/workflows/check-implicit-this.yml

@@ -1,29 +0,0 @@
-name: "Check implicit this warnings"
-
-on:
-  workflow_dispatch:
-  pull_request:
-    paths:
-      - "**qlpack.yml"
-    branches:
-      - main
-      - "rc/*"
-
-jobs:
-  check:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-      - name: Check that implicit this warnings is enabled for all packs
-        shell: bash
-        run: |
-          EXIT_CODE=0
-          packs="$(find . -iname 'qlpack.yml')"
-          for pack_file in ${packs}; do
-            option="$(yq '.warnOnImplicitThis' ${pack_file})"
-            if [ "${option}" != "true" ]; then
-              echo "::error file=${pack_file}::warnOnImplicitThis property must be set to 'true' for pack ${pack_file}"
-              EXIT_CODE=1
-            fi
-          done
-          exit "${EXIT_CODE}"

.github/workflows/check-qldoc.yml

@@ -5,7 +5,6 @@ on:
     paths:
       - "*/ql/lib/**"
       - .github/workflows/check-qldoc.yml
-      - .github/actions/fetch-codeql/action.yml
     branches:
       - main
       - "rc/*"
@@ -15,22 +14,27 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
+      - name: Install CodeQL
+        run: |
+          gh extension install github/gh-codeql
+          gh codeql set-channel nightly
+          gh codeql version
+        env:
+          GITHUB_TOKEN: ${{ github.token }}
+
       - uses: actions/checkout@v3
         with:
           fetch-depth: 2
 
-      - name: Install CodeQL
-        uses: ./.github/actions/fetch-codeql
-
       - name: Check QLdoc coverage
         shell: bash
         run: |
           EXIT_CODE=0
-          # TODO: remove the shared exception from the regex when coverage of qlpacks without dbschemes is supported
-          changed_lib_packs="$(git diff --name-only --diff-filter=ACMRT HEAD^ HEAD | { grep -Po '^(?!(shared))[a-z]*/ql/lib' || true; } | sort -u)"
+          # TODO: remove the swift exception from the regex when we fix generated QLdoc
+          changed_lib_packs="$(git diff --name-only --diff-filter=ACMRT HEAD^ HEAD | { grep -Po '^(?!swift)[a-z]*/ql/lib' || true; } | sort -u)"
           for pack_dir in ${changed_lib_packs}; do
             lang="${pack_dir%/ql/lib}"
-            codeql generate library-doc-coverage --output="${RUNNER_TEMP}/${lang}-current.txt" --dir="${pack_dir}"
+            gh codeql generate library-doc-coverage --output="${RUNNER_TEMP}/${lang}-current.txt" --dir="${pack_dir}"
           done
           git checkout HEAD^
           for pack_dir in ${changed_lib_packs}; do
@@ -38,7 +42,7 @@ jobs:
             # In this case the right thing to do is to skip the check.
             [[ ! -d "${pack_dir}" ]] && continue
             lang="${pack_dir%/ql/lib}"
-            codeql generate library-doc-coverage --output="${RUNNER_TEMP}/${lang}-baseline.txt" --dir="${pack_dir}"
+            gh codeql generate library-doc-coverage --output="${RUNNER_TEMP}/${lang}-baseline.txt" --dir="${pack_dir}"
             awk -F, '{gsub(/"/,""); if ($4==0 && $6=="public") print "\""$3"\"" }' "${RUNNER_TEMP}/${lang}-current.txt" | sort -u > "${RUNNER_TEMP}/current-undocumented.txt"
             awk -F, '{gsub(/"/,""); if ($4==0 && $6=="public") print "\""$3"\"" }' "${RUNNER_TEMP}/${lang}-baseline.txt" | sort -u > "${RUNNER_TEMP}/baseline-undocumented.txt"
             UNDOCUMENTED="$(grep -f <(comm -13 "${RUNNER_TEMP}/baseline-undocumented.txt" "${RUNNER_TEMP}/current-undocumented.txt") "${RUNNER_TEMP}/${lang}-current.txt" || true)"

.github/workflows/check-query-ids.yml

@@ -1,21 +0,0 @@
-name: Check query IDs
-
-on:
-  pull_request:
-    paths:
-      - "**/src/**/*.ql"
-      - misc/scripts/check-query-ids.py
-      - .github/workflows/check-query-ids.yml
-    branches:
-      - main
-      - "rc/*"
-  workflow_dispatch:
-
-jobs:
-  check:
-    name: Check query IDs
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-      - name: Check for duplicate query IDs
-        run: python3 misc/scripts/check-query-ids.py

.github/workflows/close-stale.yml

@@ -12,7 +12,7 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/stale@v8
+    - uses: actions/stale@v5
       with:
         repo-token: ${{ secrets.GITHUB_TOKEN }}
         stale-issue-message: 'This issue is stale because it has been open 14 days with no activity. Comment or remove the `Stale` label in order to avoid having this issue closed in 7 days.'

.github/workflows/codeql-analysis.yml

@@ -28,9 +28,9 @@ jobs:
 
     steps:
     - name: Setup dotnet
-      uses: actions/setup-dotnet@v3
+      uses: actions/setup-dotnet@v2
       with:
-        dotnet-version: 7.0.102
+        dotnet-version: 6.0.202
 
     - name: Checkout repository
       uses: actions/checkout@v3
@@ -56,7 +56,7 @@ jobs:
     #    uses a compiled language
 
     - run: |
-       dotnet build csharp
+       dotnet build csharp /p:UseSharedCompilation=false
 
     - name: Perform CodeQL Analysis
       uses: github/codeql-action/analyze@main

.github/workflows/compile-queries.yml

@@ -1,37 +0,0 @@
-name: "Compile all queries using the latest stable CodeQL CLI"
-
-on:
-  push:
-    branches:  # makes sure the cache gets populated - running on the branches people tend to merge into.
-      - main
-      - "rc/*"
-      - "codeql-cli-*"
-  pull_request:
-
-jobs:
-  compile-queries:
-    runs-on: ubuntu-latest-xl
-
-    steps:
-      - uses: actions/checkout@v3
-      - name: Setup CodeQL
-        uses: ./.github/actions/fetch-codeql
-        with:
-          channel: 'release'
-      - name: Cache compilation cache
-        id: query-cache
-        uses: ./.github/actions/cache-query-compilation
-        with: 
-          key: all-queries
-      - name: check formatting
-        run: find */ql -type f \( -name "*.qll" -o -name "*.ql" \) -print0 | xargs -0 -n 3000 -P 10 codeql query format -q --check-only
-      - name: compile queries - check-only
-        # run with --check-only if running in a PR (github.sha != main)
-        if : ${{ github.event_name == 'pull_request' }}
-        shell: bash
-        run: codeql query compile -q -j0 */ql/{src,examples} --keep-going --warnings=error --check-only --compilation-cache "${{ steps.query-cache.outputs.cache-dir }}"
-      - name: compile queries - full
-        # do full compile if running on main - this populates the cache
-        if : ${{ github.event_name != 'pull_request' }}
-        shell: bash
-        run: codeql query compile -q -j0 */ql/{src,examples} --keep-going --warnings=error --compilation-cache "${{ steps.query-cache.outputs.cache-dir }}"

.github/workflows/csharp-qltest.yml

@@ -1,86 +0,0 @@
-name: "C#: Run QL Tests"
-
-on:
-  push:
-    paths:
-      - "csharp/**"
-      - "shared/**"
-      - .github/actions/fetch-codeql/action.yml
-      - codeql-workspace.yml
-    branches:
-      - main
-      - "rc/*"
-  pull_request:
-    paths:
-      - "csharp/**"
-      - "shared/**"
-      - .github/workflows/csharp-qltest.yml
-      - .github/actions/fetch-codeql/action.yml
-      - codeql-workspace.yml
-    branches:
-      - main
-      - "rc/*"
-
-defaults:
-  run:
-    working-directory: csharp
-
-jobs:
-  qlupgrade:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-      - uses: ./.github/actions/fetch-codeql
-      - name: Check DB upgrade scripts
-        run: |
-          echo >empty.trap
-          codeql dataset import -S ql/lib/upgrades/initial/semmlecode.csharp.dbscheme testdb empty.trap
-          codeql dataset upgrade testdb --additional-packs ql/lib
-          diff -q testdb/semmlecode.csharp.dbscheme ql/lib/semmlecode.csharp.dbscheme
-      - name: Check DB downgrade scripts
-        run: |
-          echo >empty.trap
-          rm -rf testdb; codeql dataset import -S ql/lib/semmlecode.csharp.dbscheme testdb empty.trap
-          codeql resolve upgrades --format=lines --allow-downgrades --additional-packs downgrades \
-           --dbscheme=ql/lib/semmlecode.csharp.dbscheme --target-dbscheme=downgrades/initial/semmlecode.csharp.dbscheme |
-           xargs codeql execute upgrades testdb
-          diff -q testdb/semmlecode.csharp.dbscheme downgrades/initial/semmlecode.csharp.dbscheme
-  qltest:
-    runs-on: ubuntu-latest-xl
-    strategy:
-      fail-fast: false
-      matrix:
-        slice: ["1/2", "2/2"]
-    steps:
-      - uses: actions/checkout@v3
-      - uses: ./.github/actions/fetch-codeql
-      - uses: ./csharp/actions/create-extractor-pack
-      - name: Cache compilation cache
-        id: query-cache
-        uses: ./.github/actions/cache-query-compilation
-        with:
-          key: csharp-qltest-${{ matrix.slice }}
-      - name: Run QL tests
-        run: |
-          CODEQL_PATH=$(gh codeql version --format=json | jq -r .unpackedLocation)
-          # The legacy ASP extractor is not in this repo, so take the one from the nightly build
-          mv "$CODEQL_PATH/csharp/tools/extractor-asp.jar" "${{ github.workspace }}/csharp/extractor-pack/tools"
-          # Safe guard against using the bundled extractor
-          rm -rf "$CODEQL_PATH/csharp"
-          codeql test run --threads=0 --ram 50000 --slice ${{ matrix.slice }} --search-path "${{ github.workspace }}/csharp/extractor-pack" --check-databases --check-undefined-labels --check-repeated-labels --check-redefined-labels --consistency-queries ql/consistency-queries ql/test --compilation-cache "${{ steps.query-cache.outputs.cache-dir }}"
-        env:
-          GITHUB_TOKEN: ${{ github.token }}
-  unit-tests:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-      - name: Setup dotnet
-        uses: actions/setup-dotnet@v3
-        with:
-          dotnet-version: 7.0.102
-      - name: Extractor unit tests
-        run: |
-          dotnet test -p:RuntimeFrameworkVersion=7.0.2 "${{ github.workspace }}/csharp/extractor/Semmle.Util.Tests"
-          dotnet test -p:RuntimeFrameworkVersion=7.0.2 "${{ github.workspace }}/csharp/extractor/Semmle.Extraction.Tests"
-          dotnet test -p:RuntimeFrameworkVersion=7.0.2 "${{ github.workspace }}/csharp/autobuilder/Semmle.Autobuild.CSharp.Tests"
-          dotnet test -p:RuntimeFrameworkVersion=7.0.2 "${{ github.workspace }}/cpp/autobuilder/Semmle.Autobuild.Cpp.Tests"

.github/workflows/csv-coverage-metrics.yml

@@ -12,7 +12,6 @@ on:
       - main
     paths:
       - ".github/workflows/csv-coverage-metrics.yml"
-      - ".github/actions/fetch-codeql/action.yml"
 
 jobs:
   publish-java:
@@ -55,7 +54,7 @@ jobs:
           DATABASE="${{ runner.temp }}/csharp-database"
           PROJECT="${{ runner.temp }}/csharp-project"
           dotnet new classlib --language=C# --output="$PROJECT"
-          codeql database create "$DATABASE" --language=csharp --source-root="$PROJECT" --command 'dotnet build /t:rebuild csharp-project.csproj'
+          codeql database create "$DATABASE" --language=csharp --source-root="$PROJECT" --command 'dotnet build /t:rebuild csharp-project.csproj /p:UseSharedCompilation=false'
       - name: Capture coverage information
         run: |
           DATABASE="${{ runner.temp }}/csharp-database"

.github/workflows/csv-coverage-pr-artifacts.yml

@@ -3,21 +3,18 @@ name: Check framework coverage changes
 on:
   pull_request:
     paths:
-      - ".github/workflows/csv-coverage-pr-comment.yml"
-      - ".github/workflows/csv-coverage-pr-artifacts.yml"
-      - ".github/actions/fetch-codeql/action.yml"
-      - "*/ql/src/**/*.ql"
-      - "*/ql/src/**/*.qll"
-      - "*/ql/lib/**/*.ql"
-      - "*/ql/lib/**/*.qll"
-      - "*/ql/lib/ext/**/*.yml"
-      - "misc/scripts/library-coverage/*.py"
+      - '.github/workflows/csv-coverage-pr-comment.yml'
+      - '*/ql/src/**/*.ql'
+      - '*/ql/src/**/*.qll'
+      - '*/ql/lib/**/*.ql'
+      - '*/ql/lib/**/*.qll'
+      - 'misc/scripts/library-coverage/*.py'
       # input data files
-      - "*/documentation/library-coverage/cwe-sink.csv"
-      - "*/documentation/library-coverage/frameworks.csv"
+      - '*/documentation/library-coverage/cwe-sink.csv'
+      - '*/documentation/library-coverage/frameworks.csv'
     branches:
       - main
-      - "rc/*"
+      - 'rc/*'
 
 jobs:
   generate:
@@ -26,72 +23,77 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - name: Dump GitHub context
-        env:
-          GITHUB_CONTEXT: ${{ toJSON(github.event) }}
-        run: echo "$GITHUB_CONTEXT"
-      - name: Clone self (github/codeql) - MERGE
-        uses: actions/checkout@v3
-        with:
-          path: merge
-      - name: Clone self (github/codeql) - BASE
-        uses: actions/checkout@v3
-        with:
-          fetch-depth: 2
-          path: base
-      - run: |
-          git checkout HEAD^1
-          git log -1 --format='%H'
-        working-directory: base
-      - name: Set up Python 3.8
-        uses: actions/setup-python@v4
-        with:
-          python-version: 3.8
-      - name: Download CodeQL CLI
-        uses: ./merge/.github/actions/fetch-codeql
-      - name: Generate CSV files on merge commit of the PR
-        run: |
-          echo "Running generator on merge"
-          python merge/misc/scripts/library-coverage/generate-report.py ci merge merge
-          mkdir out_merge
-          cp framework-coverage-*.csv out_merge/
-          cp framework-coverage-*.rst out_merge/
-      - name: Generate CSV files on base commit of the PR
-        run: |
-          echo "Running generator on base"
-          python base/misc/scripts/library-coverage/generate-report.py ci base base
-          mkdir out_base
-          cp framework-coverage-*.csv out_base/
-          cp framework-coverage-*.rst out_base/
-      - name: Generate diff of coverage reports
-        run: |
-          python base/misc/scripts/library-coverage/compare-folders.py out_base out_merge comparison.md
-      - name: Upload CSV package list
-        uses: actions/upload-artifact@v3
-        with:
-          name: csv-framework-coverage-merge
-          path: |
-            out_merge/framework-coverage-*.csv
-            out_merge/framework-coverage-*.rst
-      - name: Upload CSV package list
-        uses: actions/upload-artifact@v3
-        with:
-          name: csv-framework-coverage-base
-          path: |
-            out_base/framework-coverage-*.csv
-            out_base/framework-coverage-*.rst
-      - name: Upload comparison results
-        uses: actions/upload-artifact@v3
-        with:
-          name: comparison
-          path: |
-            comparison.md
-      - name: Save PR number
-        run: |
-          mkdir -p pr
-          echo ${{ github.event.pull_request.number }} > pr/NR
-      - name: Upload PR number
-        uses: actions/upload-artifact@v3
-        with:
-          name: pr
-          path: pr/
+    - name: Dump GitHub context
+      env:
+        GITHUB_CONTEXT: ${{ toJSON(github.event) }}
+      run: echo "$GITHUB_CONTEXT"
+    - name: Clone self (github/codeql) - MERGE
+      uses: actions/checkout@v3
+      with:
+        path: merge
+    - name: Clone self (github/codeql) - BASE
+      uses: actions/checkout@v3
+      with:
+        fetch-depth: 2
+        path: base
+    - run: |
+        git checkout HEAD^1
+        git log -1 --format='%H'
+      working-directory: base
+    - name: Set up Python 3.8
+      uses: actions/setup-python@v4
+      with:
+        python-version: 3.8
+    - name: Download CodeQL CLI
+      env:
+         GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      run: |
+         gh release download --repo "github/codeql-cli-binaries" --pattern "codeql-linux64.zip"
+    - name: Unzip CodeQL CLI
+      run: unzip -d codeql-cli codeql-linux64.zip
+    - name: Generate CSV files on merge commit of the PR
+      run: |
+        echo "Running generator on merge"
+        PATH="$PATH:codeql-cli/codeql" python merge/misc/scripts/library-coverage/generate-report.py ci merge merge
+        mkdir out_merge
+        cp framework-coverage-*.csv out_merge/
+        cp framework-coverage-*.rst out_merge/
+    - name: Generate CSV files on base commit of the PR
+      run: |
+        echo "Running generator on base"
+        PATH="$PATH:codeql-cli/codeql" python base/misc/scripts/library-coverage/generate-report.py ci base base
+        mkdir out_base
+        cp framework-coverage-*.csv out_base/
+        cp framework-coverage-*.rst out_base/
+    - name: Generate diff of coverage reports
+      run: |
+        python base/misc/scripts/library-coverage/compare-folders.py out_base out_merge comparison.md
+    - name: Upload CSV package list
+      uses: actions/upload-artifact@v3
+      with:
+        name: csv-framework-coverage-merge
+        path: |
+          out_merge/framework-coverage-*.csv
+          out_merge/framework-coverage-*.rst
+    - name: Upload CSV package list
+      uses: actions/upload-artifact@v3
+      with:
+        name: csv-framework-coverage-base
+        path: |
+          out_base/framework-coverage-*.csv
+          out_base/framework-coverage-*.rst
+    - name: Upload comparison results
+      uses: actions/upload-artifact@v3
+      with:
+        name: comparison
+        path: |
+          comparison.md
+    - name: Save PR number
+      run: |
+        mkdir -p pr
+        echo ${{ github.event.pull_request.number }} > pr/NR
+    - name: Upload PR number
+      uses: actions/upload-artifact@v3
+      with:
+        name: pr
+        path: pr/

.github/workflows/csv-coverage-timeseries.yml

@@ -5,29 +5,38 @@ on:
 
 jobs:
   build:
+
     runs-on: ubuntu-latest
 
     steps:
-      - name: Clone self (github/codeql)
-        uses: actions/checkout@v3
-        with:
-          path: script
-      - name: Clone self (github/codeql) for analysis
-        uses: actions/checkout@v3
-        with:
-          path: codeqlModels
-          fetch-depth: 0
-      - name: Set up Python 3.8
-        uses: actions/setup-python@v4
-        with:
-          python-version: 3.8
-      - name: Download CodeQL CLI
-        uses: ./script/.github/actions/fetch-codeql
-      - name: Build modeled package list
-        run: |
-          python script/misc/scripts/library-coverage/generate-timeseries.py codeqlModels
-      - name: Upload timeseries CSV
-        uses: actions/upload-artifact@v3
-        with:
-          name: framework-coverage-timeseries
-          path: framework-coverage-timeseries-*.csv
+    - name: Clone self (github/codeql)
+      uses: actions/checkout@v3
+      with:
+        path: script
+    - name: Clone self (github/codeql) for analysis
+      uses: actions/checkout@v3
+      with:
+        path: codeqlModels
+        fetch-depth: 0
+    - name: Set up Python 3.8
+      uses: actions/setup-python@v4
+      with:
+        python-version: 3.8
+    - name: Download CodeQL CLI
+      env:
+         GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      run: |
+         gh release download --repo "github/codeql-cli-binaries" --pattern "codeql-linux64.zip"
+    - name: Unzip CodeQL CLI
+      run: unzip -d codeql-cli codeql-linux64.zip
+    - name: Build modeled package list
+      run: |
+        CLI=$(realpath "codeql-cli/codeql")
+        echo $CLI
+        PATH="$PATH:$CLI" python script/misc/scripts/library-coverage/generate-timeseries.py codeqlModels
+    - name: Upload timeseries CSV
+      uses: actions/upload-artifact@v3
+      with:
+        name: framework-coverage-timeseries
+        path: framework-coverage-timeseries-*.csv
+

.github/workflows/csv-coverage-update.yml

@@ -12,27 +12,33 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - name: Dump GitHub context
-        env:
-          GITHUB_CONTEXT: ${{ toJSON(github.event) }}
-        run: echo "$GITHUB_CONTEXT"
-      - name: Clone self (github/codeql)
-        uses: actions/checkout@v3
-        with:
-          path: ql
-          fetch-depth: 0
-      - name: Set up Python 3.8
-        uses: actions/setup-python@v4
-        with:
-          python-version: 3.8
-      - name: Download CodeQL CLI
-        uses: ./ql/.github/actions/fetch-codeql
-      - name: Generate coverage files
-        run: |
-          python ql/misc/scripts/library-coverage/generate-report.py ci ql ql
+    - name: Dump GitHub context
+      env:
+        GITHUB_CONTEXT: ${{ toJSON(github.event) }}
+      run: echo "$GITHUB_CONTEXT"
+    - name: Clone self (github/codeql)
+      uses: actions/checkout@v3
+      with:
+        path: ql
+        fetch-depth: 0
+    - name: Set up Python 3.8
+      uses: actions/setup-python@v4
+      with:
+        python-version: 3.8
+    - name: Download CodeQL CLI
+      env:
+         GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      run: |
+         gh release download --repo "github/codeql-cli-binaries" --pattern "codeql-linux64.zip"
+    - name: Unzip CodeQL CLI
+      run: unzip -d codeql-cli codeql-linux64.zip
 
-      - name: Create pull request with changes
-        env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-        run: |
-          python ql/misc/scripts/library-coverage/create-pr.py ql "$GITHUB_REPOSITORY"
+    - name: Generate coverage files
+      run: |
+        PATH="$PATH:codeql-cli/codeql" python ql/misc/scripts/library-coverage/generate-report.py ci ql ql
+
+    - name: Create pull request with changes
+      env:
+         GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      run: |
+        python ql/misc/scripts/library-coverage/create-pr.py ql "$GITHUB_REPOSITORY"

.github/workflows/csv-coverage.yml

@@ -4,39 +4,46 @@ on:
   workflow_dispatch:
     inputs:
       qlModelShaOverride:
-        description: "github/codeql repo SHA used for looking up the CSV models"
+        description: 'github/codeql repo SHA used for looking up the CSV models'
         required: false
 
 jobs:
   build:
+
     runs-on: ubuntu-latest
 
     steps:
-      - name: Clone self (github/codeql)
-        uses: actions/checkout@v3
-        with:
-          path: script
-      - name: Clone self (github/codeql) for analysis
-        uses: actions/checkout@v3
-        with:
-          path: codeqlModels
-          ref: ${{ github.event.inputs.qlModelShaOverride || github.ref }}
-      - name: Set up Python 3.8
-        uses: actions/setup-python@v4
-        with:
-          python-version: 3.8
-      - name: Download CodeQL CLI
-        uses: ./script/.github/actions/fetch-codeql
-      - name: Build modeled package list
-        run: |
-          python script/misc/scripts/library-coverage/generate-report.py ci codeqlModels script
-      - name: Upload CSV package list
-        uses: actions/upload-artifact@v3
-        with:
-          name: framework-coverage-csv
-          path: framework-coverage-*.csv
-      - name: Upload RST package list
-        uses: actions/upload-artifact@v3
-        with:
-          name: framework-coverage-rst
-          path: framework-coverage-*.rst
+    - name: Clone self (github/codeql)
+      uses: actions/checkout@v3
+      with:
+        path: script
+    - name: Clone self (github/codeql) for analysis
+      uses: actions/checkout@v3
+      with:
+        path: codeqlModels
+        ref: ${{ github.event.inputs.qlModelShaOverride || github.ref }}
+    - name: Set up Python 3.8
+      uses: actions/setup-python@v4
+      with:
+        python-version: 3.8
+    - name: Download CodeQL CLI
+      env:
+         GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      run: |
+         gh release download --repo "github/codeql-cli-binaries" --pattern "codeql-linux64.zip"
+    - name: Unzip CodeQL CLI
+      run: unzip -d codeql-cli codeql-linux64.zip
+    - name: Build modeled package list
+      run: |
+        PATH="$PATH:codeql-cli/codeql" python script/misc/scripts/library-coverage/generate-report.py ci codeqlModels script
+    - name: Upload CSV package list
+      uses: actions/upload-artifact@v3
+      with:
+        name: framework-coverage-csv
+        path: framework-coverage-*.csv
+    - name: Upload RST package list
+      uses: actions/upload-artifact@v3
+      with:
+        name: framework-coverage-rst
+        path: framework-coverage-*.rst
+

.github/workflows/fast-forward.yml

@@ -1,50 +0,0 @@
-# Fast-forwards the branch specified in BRANCH_NAME
-# to the github.ref/sha that this workflow is run on.
-# Used as part of the release process, to ensure
-# external query writers can always access a branch of github/codeql
-# that is compatible with the latest stable release.
-name: Fast-forward tracking branch for selected CodeQL version
-on:
-  workflow_dispatch:
-
-jobs:
-  fast-forward:
-    name: Fast-forward tracking branch for selected CodeQL version
-    runs-on: ubuntu-latest
-    if: github.repository == 'github/codeql'
-    permissions:
-      contents: write
-    env:
-      BRANCH_NAME: 'lgtm.com'
-    steps:
-      - name: Validate chosen branch
-        if: ${{ !startsWith(github.ref_name, 'codeql-cli-') }}
-        shell: bash
-        run: |
-          echo "::error ::The $BRANCH_NAME tracking branch should only be fast-forwarded to the tip of a codeql-cli-* branch, got $GITHUB_REF_NAME instead."
-          exit 1
-
-      - name: Checkout
-        uses: actions/checkout@v3
-
-      - name: Git config
-        shell: bash
-        run: |
-          git config user.name "github-actions[bot]"
-          git config user.email "41898282+github-actions[bot]@users.noreply.github.com"
-
-      - name: Fetch
-        shell: bash
-        run: |
-          set -x
-          echo "Fetching $BRANCH_NAME"
-          # Explicitly unshallow and fetch to ensure the remote ref is available.
-          git fetch --unshallow origin "$BRANCH_NAME"
-          git checkout -b "$BRANCH_NAME" "origin/$BRANCH_NAME"
-
-      - name: Fast-forward
-        shell: bash
-        run: |
-          echo "Fast-forwarding $BRANCH_NAME to ${GITHUB_REF}@${GITHUB_SHA}"
-          git merge --ff-only "$GITHUB_SHA"
-          git push origin "$BRANCH_NAME"

.github/workflows/go-tests-other-os.yml

@@ -1,80 +0,0 @@
-name: "Go: Run Tests - Other OS"
-on:
-  pull_request:
-    paths:
-      - "go/**"
-      - "!go/ql/**" # don't run other-os if only ql/ files changed
-      - .github/workflows/go-tests-other-os.yml
-      - .github/actions/**
-      - codeql-workspace.yml
-jobs:
-  test-mac:
-    name: Test MacOS
-    runs-on: macos-latest
-    steps:
-      - name: Set up Go 1.20
-        uses: actions/setup-go@v4
-        with:
-          go-version: '1.20'
-        id: go
-
-      - name: Check out code
-        uses: actions/checkout@v2
-
-      - name: Set up CodeQL CLI
-        uses: ./.github/actions/fetch-codeql
-
-      - name: Enable problem matchers in repository
-        shell: bash
-        run: 'find .github/problem-matchers -name \*.json -exec echo "::add-matcher::{}" \;'
-
-      - name: Build
-        run: |
-          cd go
-          make
-
-      - name: Cache compilation cache
-        id: query-cache
-        uses: ./.github/actions/cache-query-compilation
-        with:
-          key: go-qltest
-      - name: Test
-        run: |
-          cd go
-          make test cache="${{ steps.query-cache.outputs.cache-dir }}"
-
-  test-win:
-    name: Test Windows
-    runs-on: windows-latest-xl
-    steps:
-      - name: Set up Go 1.20
-        uses: actions/setup-go@v4
-        with:
-          go-version: '1.20'
-        id: go
-
-      - name: Check out code
-        uses: actions/checkout@v2
-
-      - name: Set up CodeQL CLI
-        uses: ./.github/actions/fetch-codeql
-
-      - name: Enable problem matchers in repository
-        shell: bash
-        run: 'find .github/problem-matchers -name \*.json -exec echo "::add-matcher::{}" \;'
-
-      - name: Build
-        run: |
-          cd go
-          make
-
-      - name: Cache compilation cache
-        id: query-cache
-        uses: ./.github/actions/cache-query-compilation
-        with:
-          key: go-qltest
-
-      - name: Test
-        run: |
-          cd go
-          make test cache="${{ steps.query-cache.outputs.cache-dir }}"

.github/workflows/go-tests.yml

@@ -1,69 +1,162 @@
 name: "Go: Run Tests"
 on:
-  push:
-    paths:
-      - "go/**"
-      - .github/workflows/go-tests.yml
-      - .github/actions/**
-      - codeql-workspace.yml
-    branches:
-      - main
-      - "rc/*"
   pull_request:
     paths:
       - "go/**"
       - .github/workflows/go-tests.yml
-      - .github/actions/**
       - codeql-workspace.yml
 jobs:
+
   test-linux:
     name: Test Linux (Ubuntu)
-    runs-on: ubuntu-latest-xl
+    runs-on: ubuntu-latest
     steps:
-      - name: Set up Go 1.20
-        uses: actions/setup-go@v4
-        with:
-          go-version: '1.20'
-        id: go
 
-      - name: Check out code
-        uses: actions/checkout@v2
+    - name: Set up Go 1.18.1
+      uses: actions/setup-go@v3
+      with:
+        go-version: 1.18.1
+      id: go
 
-      - name: Set up CodeQL CLI
-        uses: ./.github/actions/fetch-codeql
+    - name: Set up CodeQL CLI
+      run: |
+        echo "Removing old CodeQL Directory..."
+        rm -rf $HOME/codeql
+        echo "Done"
+        cd $HOME
+        echo "Downloading CodeQL CLI..."
+        LATEST=$(gh release list --repo https://github.com/github/codeql-cli-binaries | cut -f 1 | sort --version-sort | grep -v beta | tail -1)
+        gh release download --repo https://github.com/github/codeql-cli-binaries --pattern codeql-linux64.zip "$LATEST"
+        echo "Done"
+        echo "Unpacking CodeQL CLI..."
+        unzip -q codeql-linux64.zip
+        rm -f codeql-linux64.zip
+        echo "Done"
+      env:
+        GITHUB_TOKEN: ${{ github.token }}
 
-      - name: Enable problem matchers in repository
-        shell: bash
-        run: 'find .github/problem-matchers -name \*.json -exec echo "::add-matcher::{}" \;'
+    - name: Check out code
+      uses: actions/checkout@v2
 
-      - name: Build
-        run: |
-          cd go
-          make
+    - name: Enable problem matchers in repository
+      shell: bash
+      run: 'find .github/problem-matchers -name \*.json -exec echo "::add-matcher::{}" \;'
 
-      - name: Check that all Go code is autoformatted
-        run: |
-          cd go
-          make check-formatting
+    - name: Build
+      run: |
+        cd go
+        env PATH=$PATH:$HOME/codeql make
 
-      - name: Compile qhelp files to markdown
-        run: |
-          cd go
-          env QHELP_OUT_DIR=qhelp-out make qhelp-to-markdown
+    - name: Check that all QL and Go code is autoformatted
+      run: |
+        cd go
+        env PATH=$PATH:$HOME/codeql make check-formatting
 
-      - name: Upload qhelp markdown
-        uses: actions/upload-artifact@v3
-        with:
-          name: qhelp-markdown
-          path: go/qhelp-out/**/*.md
+    - name: Compile qhelp files to markdown
+      run: |
+        cd go
+        env PATH=$PATH:$HOME/codeql QHELP_OUT_DIR=qhelp-out make qhelp-to-markdown
 
-      - name: Cache compilation cache
-        id: query-cache
-        uses: ./.github/actions/cache-query-compilation
-        with:
-          key: go-qltest
+    - name: Upload qhelp markdown
+      uses: actions/upload-artifact@v2
+      with:
+        name: qhelp-markdown
+        path: go/qhelp-out/**/*.md
 
-      - name: Test
-        run: |
-          cd go
-          make test cache="${{ steps.query-cache.outputs.cache-dir }}"
+    - name: Test
+      run: |
+        cd go
+        env PATH=$PATH:$HOME/codeql make test
+
+  test-mac:
+    name: Test MacOS
+    runs-on: macOS-latest
+    steps:
+    - name: Set up Go 1.18.1
+      uses: actions/setup-go@v3
+      with:
+        go-version: 1.18.1
+      id: go
+
+    - name: Set up CodeQL CLI
+      run: |
+        echo "Removing old CodeQL Directory..."
+        rm -rf $HOME/codeql
+        echo "Done"
+        cd $HOME
+        echo "Downloading CodeQL CLI..."
+        LATEST=$(gh release list --repo https://github.com/github/codeql-cli-binaries | cut -f 1 | sort --version-sort | grep -v beta | tail -1)
+        gh release download --repo https://github.com/github/codeql-cli-binaries --pattern codeql-osx64.zip "$LATEST"
+        echo "Done"
+        echo "Unpacking CodeQL CLI..."
+        unzip -q codeql-osx64.zip
+        rm -f codeql-osx64.zip
+        echo "Done"
+      env:
+        GITHUB_TOKEN: ${{ github.token }}
+
+    - name: Check out code
+      uses: actions/checkout@v2
+
+    - name: Enable problem matchers in repository
+      shell: bash
+      run: 'find .github/problem-matchers -name \*.json -exec echo "::add-matcher::{}" \;'
+
+    - name: Build
+      run: |
+        cd go
+        env PATH=$PATH:$HOME/codeql make
+
+    - name: Test
+      run: |
+        cd go
+        env PATH=$PATH:$HOME/codeql make test
+
+  test-win:
+    name: Test Windows
+    runs-on: windows-2019
+    steps:
+    - name: Set up Go 1.18.1
+      uses: actions/setup-go@v3
+      with:
+        go-version: 1.18.1
+      id: go
+
+    - name: Set up CodeQL CLI
+      run: |
+        echo "Removing old CodeQL Directory..."
+        rm -rf $HOME/codeql
+        echo "Done"
+        cd "$HOME"
+        echo "Downloading CodeQL CLI..."
+        LATEST=$(gh release list --repo https://github.com/github/codeql-cli-binaries | cut -f 1 | sort --version-sort | grep -v beta | tail -1)
+        gh release download --repo https://github.com/github/codeql-cli-binaries --pattern codeql-win64.zip "$LATEST"
+        echo "Done"
+        echo "Unpacking CodeQL CLI..."
+        unzip -q -o codeql-win64.zip
+        unzip -q -o codeql-win64.zip codeql/codeql.exe
+        rm -f codeql-win64.zip
+        echo "Done"
+      env:
+        GITHUB_TOKEN: ${{ github.token }}
+      shell:
+        bash
+
+    - name: Check out code
+      uses: actions/checkout@v2
+
+    - name: Enable problem matchers in repository
+      shell: bash
+      run: 'find .github/problem-matchers -name \*.json -exec echo "::add-matcher::{}" \;'
+
+    - name: Build
+      run: |
+        $Env:Path += ";$HOME\codeql"
+        cd go
+        make
+
+    - name: Test
+      run: |
+        $Env:Path += ";$HOME\codeql"
+        cd go
+        make test

.github/workflows/js-ml-tests.yml

@@ -5,7 +5,6 @@ on:
     paths:
       - "javascript/ql/experimental/adaptivethreatmodeling/**"
       - .github/workflows/js-ml-tests.yml
-      - .github/actions/fetch-codeql/action.yml
       - codeql-workspace.yml
     branches:
       - main
@@ -14,7 +13,6 @@ on:
     paths:
       - "javascript/ql/experimental/adaptivethreatmodeling/**"
       - .github/workflows/js-ml-tests.yml
-      - .github/actions/fetch-codeql/action.yml
       - codeql-workspace.yml
   workflow_dispatch:
 
@@ -23,9 +21,22 @@ defaults:
     working-directory: javascript/ql/experimental/adaptivethreatmodeling
 
 jobs:
-  qltest:
-    name: Test QL
-    runs-on: ubuntu-latest-xl
+  qlformat:
+    name: Check QL formatting
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+
+      - uses: ./.github/actions/fetch-codeql
+
+      - name: Check QL formatting
+        run: |
+          find . "(" -name "*.ql" -or -name "*.qll" ")" -print0 | \
+            xargs -0 codeql query format --check-only
+
+  qlcompile:
+    name: Check QL compilation
+    runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v3
 
@@ -33,33 +44,36 @@ jobs:
 
       - name: Install pack dependencies
         run: |
-          for pack in modelbuilding src test; do
+          for pack in modelbuilding src; do
             codeql pack install --mode verify -- "${pack}"
           done
-      
-      - name: Cache compilation cache
-        id: query-cache
-        uses: ./.github/actions/cache-query-compilation
-        with: 
-          key: js-ml-test
 
       - name: Check QL compilation
         run: |
           codeql query compile \
             --check-only \
-            --ram 50000 \
+            --ram 5120 \
             --additional-packs "${{ github.workspace }}" \
             --threads=0 \
-            --compilation-cache "${{ steps.query-cache.outputs.cache-dir }}" \
             -- \
             lib modelbuilding src
 
+  qltest:
+    name: Run QL tests
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+
+      - uses: ./.github/actions/fetch-codeql
+
+      - name: Install pack dependencies
+        run: codeql pack install -- test
+
       - name: Run QL tests
         run: |
           codeql test run \
             --threads=0 \
-            --ram 50000 \
+            --ram 5120 \
             --additional-packs "${{ github.workspace }}" \
-            --compilation-cache "${{ steps.query-cache.outputs.cache-dir }}" \
             -- \
-            test
+            test

.github/workflows/mad_modelDiff.yml

@@ -11,7 +11,7 @@ on:
     branches:
       - main
     paths:
-      - "java/ql/src/utils/modelgenerator/**/*.*"
+      - "java/ql/src/utils/model-generator/**/*.*"
       - ".github/workflows/mad_modelDiff.yml"
 
 permissions:
@@ -40,12 +40,12 @@ jobs:
       - name: Download database
         env:
           SLUG: ${{ matrix.slug }}
-          GH_TOKEN: ${{ github.token }}
         run: |
           set -x
           mkdir lib-dbs
           SHORTNAME=${SLUG//[^a-zA-Z0-9_]/}
-          gh api -H "Accept: application/zip" "/repos/${SLUG}/code-scanning/codeql/databases/java" > "$SHORTNAME.zip"
+          projectId=`curl -s https://lgtm.com/api/v1.0/projects/g/${SLUG} | jq .id`
+          curl -L "https://lgtm.com/api/v1.0/snapshots/$projectId/java" -o "$SHORTNAME.zip"
           unzip -q -d "${SHORTNAME}-db" "${SHORTNAME}.zip"
           mkdir "lib-dbs/$SHORTNAME/"
           mv "${SHORTNAME}-db/"$(ls -1 "${SHORTNAME}"-db)/* "lib-dbs/${SHORTNAME}/"
@@ -61,8 +61,8 @@ jobs:
             DATABASE=$2
             cd codeql-$QL_VARIANT
             SHORTNAME=`basename $DATABASE`
-            python java/ql/src/utils/modelgenerator/GenerateFlowModel.py --with-summaries --with-sinks $DATABASE ${SHORTNAME}.temp.model.yml
-            mv java/ql/lib/ext/generated/${SHORTNAME}.temp.model.yml $MODELS/${SHORTNAME}Generated_${QL_VARIANT}.model.yml
+            python java/ql/src/utils/model-generator/GenerateFlowModel.py --with-summaries --with-sinks $DATABASE $MODELS/${SHORTNAME}.qll
+            mv $MODELS/${SHORTNAME}.qll $MODELS/${SHORTNAME}Generated_${QL_VARIANT}.qll
             cd ..
           }
 
@@ -85,21 +85,19 @@ jobs:
           set -x
           MODELS=`pwd`/tmp-models
           ls -1 tmp-models/
-          for m in $MODELS/*_main.model.yml ; do
+          for m in $MODELS/*_main.qll ; do
             t="${m/main/"pr"}"
             basename=`basename $m`
-            name="diff_${basename/_main.model.yml/""}"
+            name="diff_${basename/_main.qll/""}"
             (diff -w -u $m $t | diff2html -i stdin -F $MODELS/$name.html) || true
           done
       - uses: actions/upload-artifact@v3
         with:
           name: models
-          path: tmp-models/*.model.yml
+          path: tmp-models/*.qll
           retention-days: 20
       - uses: actions/upload-artifact@v3
         with:
           name: diffs
           path: tmp-models/*.html
-          # An html file is only produced if the generated models differ.
-          if-no-files-found: ignore
           retention-days: 20

.github/workflows/mad_regenerate-models.yml

@@ -9,7 +9,6 @@ on:
       - main
     paths:
       - ".github/workflows/mad_regenerate-models.yml"
-      - ".github/actions/fetch-codeql/action.yml"
 
 jobs:
   regenerate-models:
@@ -50,10 +49,10 @@ jobs:
           SLUG: ${{ matrix.slug }}
         run: |
           SHORTNAME=${SLUG//[^a-zA-Z0-9_]/}
-          java/ql/src/utils/modelgenerator/RegenerateModels.py "${SLUG}" dbs/${SHORTNAME}
+          java/ql/src/utils/model-generator/RegenerateModels.py "${SLUG}" dbs/${SHORTNAME}
       - name: Stage changes
         run: |
-          find java -name "*.model.yml" -print0 | xargs -0 git add
+          find java -name "*.qll" -print0 | xargs -0 git add
           git status
           git diff --cached > models.patch
       - uses: actions/upload-artifact@v3

.github/workflows/qhelp-pr-preview.yml

@@ -27,7 +27,7 @@ on:
       - main
       - "rc/*"
     paths:
-      - "**/*.qhelp"
+      - "ruby/**/*.qhelp"
 
 jobs:
   qhelp:
@@ -52,7 +52,7 @@ jobs:
         id: changes
         run: |
           (git diff -z --name-only --diff-filter=ACMRT HEAD~1 HEAD | grep -z '.qhelp$' | grep -z -v '.inc.qhelp';
-           git diff -z --name-only --diff-filter=ACMRT HEAD~1 HEAD | grep -z '.inc.qhelp$' | xargs --null -rn1 basename -z | xargs --null -rn1 git grep -z -l) |
+           git diff -z --name-only --diff-filter=ACMRT HEAD~1 HEAD | grep -z '.inc.qhelp$' | xargs --null -rn1 basename | xargs --null -rn1 git grep -z -l) |
            grep -z '.qhelp$' | grep -z -v '^-' | sort -z -u > "${RUNNER_TEMP}/paths.txt"
 
       - name: QHelp preview

.github/workflows/ql-for-ql-build.yml

@@ -10,29 +10,63 @@ env:
   CARGO_TERM_COLOR: always
 
 jobs:
-  analyze:
-    runs-on: ubuntu-latest-xl
+  queries:
+    runs-on: ubuntu-latest
     steps:
-      ### Build the queries ###
       - uses: actions/checkout@v3
-        with:
-          fetch-depth: 0
       - name: Find codeql
         id: find-codeql
-        uses: github/codeql-action/init@v2
+        uses: github/codeql-action/init@aa93aea877e5fb8841bcb1193f672abf6e9f2980
         with:
           languages: javascript # does not matter
-      - uses: ./.github/actions/os-version
-        id: os_version
-      ### Build the extractor ###
+          tools: latest
+      - name: Get CodeQL version
+        id: get-codeql-version
+        run: |
+          echo "::set-output name=version::$("${CODEQL}" --version | head -n 1 | rev | cut -d " " -f 1 | rev)"
+        shell: bash
+        env:
+          CODEQL: ${{ steps.find-codeql.outputs.codeql-path }}
+      - name: Cache queries
+        id: cache-queries
+        uses: actions/cache@v3
+        with:
+          path: ${{ runner.temp }}/query-pack.zip
+          key: queries-${{ hashFiles('ql/**/*.ql*') }}-${{ hashFiles('ql/**/qlpack.yml') }}-${{ hashFiles('ql/ql/src/ql.dbscheme*') }}-${{ steps.get-codeql-version.outputs.version }}
+      - name: Build query pack
+        if: steps.cache-queries.outputs.cache-hit != 'true'
+        run: |
+          cd ql/ql/src
+          "${CODEQL}" pack create
+          cd .codeql/pack/codeql/ql/0.0.0
+          zip "${PACKZIP}" -r .
+        env:
+          CODEQL: ${{ steps.find-codeql.outputs.codeql-path }}
+          PACKZIP: ${{ runner.temp }}/query-pack.zip
+      - name: Upload query pack
+        uses: actions/upload-artifact@v3
+        with:
+          name: query-pack-zip
+          path: ${{ runner.temp }}/query-pack.zip
+
+  extractors:
+    strategy:
+      fail-fast: false
+
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v3
       - name: Cache entire extractor
         id: cache-extractor
         uses: actions/cache@v3
         with:
           path: |
-            ql/extractor-pack/
-            ql/target/release/buramu
-          key: ${{ runner.os }}-${{ steps.os_version.outputs.version }}-extractor-${{ hashFiles('ql/**/Cargo.lock') }}-${{ hashFiles('shared/tree-sitter-extractor') }}-${{ hashFiles('ql/**/*.rs') }}
+            ql/target/release/ql-autobuilder
+            ql/target/release/ql-autobuilder.exe
+            ql/target/release/ql-extractor
+            ql/target/release/ql-extractor.exe
+          key: ${{ runner.os }}-extractor-${{ hashFiles('ql/**/Cargo.lock') }}-${{ hashFiles('ql/**/*.rs') }}
       - name: Cache cargo
         if: steps.cache-extractor.outputs.cache-hit != 'true'
         uses: actions/cache@v3
@@ -41,46 +75,129 @@ jobs:
             ~/.cargo/registry
             ~/.cargo/git
             ql/target
-          key: ${{ runner.os }}-${{ steps.os_version.outputs.version }}-rust-cargo-${{ hashFiles('ql/**/Cargo.lock') }}
+          key: ${{ runner.os }}-rust-cargo-${{ hashFiles('ql/**/Cargo.lock') }}
+      - name: Check formatting
+        if: steps.cache-extractor.outputs.cache-hit != 'true'
+        run: cd ql; cargo fmt --all -- --check
+      - name: Build
+        if: steps.cache-extractor.outputs.cache-hit != 'true'
+        run: cd ql; cargo build --verbose
+      - name: Run tests
+        if: steps.cache-extractor.outputs.cache-hit != 'true'
+        run: cd ql; cargo test --verbose
       - name: Release build
         if: steps.cache-extractor.outputs.cache-hit != 'true'
-        run: cd ql; ./scripts/create-extractor-pack.sh       
-        env:
-          GH_TOKEN: ${{ github.token }}   
-      - name: Cache compilation cache
-        id: query-cache
-        uses: ./.github/actions/cache-query-compilation
-        with: 
-          key: run-ql-for-ql
-      - name: Make database and analyze
-        run: |
-          ./ql/target/release/buramu | tee deprecated.blame # Add a blame file for the extractor to parse.
-          ${CODEQL} database create -l=ql --search-path ql/extractor-pack ${DB}
-          ${CODEQL} database analyze -j0 --format=sarif-latest --output=ql-for-ql.sarif ${DB} ql/ql/src/codeql-suites/ql-code-scanning.qls  --compilation-cache "${{ steps.query-cache.outputs.cache-dir }}"
-        env: 
-          CODEQL: ${{ steps.find-codeql.outputs.codeql-path }}
-          DB: ${{ runner.temp }}/DB
-          LGTM_INDEX_FILTERS: |
-            exclude:ql/ql/test
-            exclude:*/ql/lib/upgrades/
-            exclude:java/ql/integration-tests
-      - name: Upload sarif to code-scanning
-        uses: github/codeql-action/upload-sarif@v2
+        run: cd ql; cargo build --release
+      - name: Generate dbscheme
+        if: steps.cache-extractor.outputs.cache-hit != 'true'
+        run: ql/target/release/ql-generator --dbscheme ql/ql/src/ql.dbscheme --library ql/ql/src/codeql_ql/ast/internal/TreeSitter.qll
+      - uses: actions/upload-artifact@v3
         with:
-          sarif_file: ql-for-ql.sarif
-          category: ql-for-ql
+          name: extractor-ubuntu-latest
+          path: |
+            ql/target/release/ql-autobuilder
+            ql/target/release/ql-autobuilder.exe
+            ql/target/release/ql-extractor
+            ql/target/release/ql-extractor.exe
+          retention-days: 1
+  package:
+    runs-on: ubuntu-latest
+
+    needs:
+      - extractors
+      - queries
+
+    steps:
+      - uses: actions/checkout@v3
+      - uses: actions/download-artifact@v3
+        with:
+          name: query-pack-zip
+          path: query-pack-zip
+      - uses: actions/download-artifact@v3
+        with:
+          name: extractor-ubuntu-latest
+          path: linux64
+      - run: |
+          unzip query-pack-zip/*.zip -d pack
+          cp -r ql/codeql-extractor.yml ql/tools ql/ql/src/ql.dbscheme.stats pack/
+          mkdir -p pack/tools/linux64
+          if [[ -f linux64/ql-autobuilder ]]; then
+            cp linux64/ql-autobuilder pack/tools/linux64/autobuilder
+            chmod +x pack/tools/linux64/autobuilder
+          fi
+          if [[ -f linux64/ql-extractor ]]; then
+            cp linux64/ql-extractor pack/tools/linux64/extractor
+            chmod +x pack/tools/linux64/extractor
+          fi
+          cd pack
+          zip -rq ../codeql-ql.zip .
+      - uses: actions/upload-artifact@v3
+        with:
+          name: codeql-ql-pack
+          path: codeql-ql.zip
+          retention-days: 1
+  analyze:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        folder: [cpp, csharp, java, javascript, python, ql, ruby, swift, go]
+
+    needs:
+      - package
+
+    steps:
+      - name: Download pack
+        uses: actions/download-artifact@v3
+        with:
+          name: codeql-ql-pack
+          path: ${{ runner.temp }}/codeql-ql-pack-artifact
+
+      - name: Prepare pack
+        run: |
+          unzip "${PACK_ARTIFACT}/*.zip" -d "${PACK}"
+        env:
+          PACK_ARTIFACT: ${{ runner.temp }}/codeql-ql-pack-artifact
+          PACK: ${{ runner.temp }}/pack
+      - name: Hack codeql-action options
+        run: |
+          JSON=$(jq -nc --arg pack "${PACK}" '.database."run-queries"=["--search-path", $pack] | .resolve.queries=["--search-path", $pack] | .resolve.extractor=["--search-path", $pack] | .database.init=["--search-path", $pack]')
+          echo "CODEQL_ACTION_EXTRA_OPTIONS=${JSON}" >> ${GITHUB_ENV}
+        env:
+          PACK: ${{ runner.temp }}/pack
+
+      - name: Checkout repository
+        uses: actions/checkout@v3
+      - name: Create CodeQL config file
+        run: |
+          echo "paths:" > ${CONF}
+          echo "  - ${FOLDER}" >> ${CONF}
+          echo "paths-ignore:" >> ${CONF}
+          echo "  - ql/ql/test" >> ${CONF} 
+          echo "disable-default-queries: true" >> ${CONF}
+          echo "packs:" >> ${CONF}
+          echo "  - codeql/ql" >> ${CONF}
+          echo "Config file: "
+          cat ${CONF}
+        env: 
+          CONF: ./ql-for-ql-config.yml
+          FOLDER: ${{ matrix.folder }}
+      - name: Initialize CodeQL
+        uses: github/codeql-action/init@aa93aea877e5fb8841bcb1193f672abf6e9f2980
+        with:
+          languages: ql
+          db-location: ${{ runner.temp }}/db
+          config-file: ./ql-for-ql-config.yml
+          tools: latest
+
+      - name: Perform CodeQL Analysis
+        uses: github/codeql-action/analyze@aa93aea877e5fb8841bcb1193f672abf6e9f2980
+        with: 
+          category: "ql-for-ql-${{ matrix.folder }}"
+      - name: Copy sarif file to CWD
+        run: cp ../results/ql.sarif ./${{ matrix.folder }}.sarif
       - name: Sarif as artifact
         uses: actions/upload-artifact@v3
         with:
-          name: ql-for-ql.sarif
-          path: ql-for-ql.sarif
-      - name: Split out the sarif file into langs
-        run: |
-          mkdir split-sarif
-          node ./ql/scripts/split-sarif.js ql-for-ql.sarif split-sarif
-      - name: Upload langs as artifacts
-        uses: actions/upload-artifact@v3
-        with:
-          name: ql-for-ql-langs
-          path: split-sarif
-          retention-days: 1
+          name: ${{ matrix.folder }}.sarif
+          path: ${{ matrix.folder }}.sarif
+

.github/workflows/ql-for-ql-dataset_measure.yml

@@ -25,20 +25,18 @@ jobs:
 
       - name: Find codeql
         id: find-codeql
-        uses: github/codeql-action/init@v2
+        uses: github/codeql-action/init@aa93aea877e5fb8841bcb1193f672abf6e9f2980
         with:
           languages: javascript # does not matter
-      - uses: ./.github/actions/os-version
-        id: os_version
       - uses: actions/cache@v3
         with:
           path: |
             ~/.cargo/registry
             ~/.cargo/git
             ql/target
-          key: ${{ runner.os }}-${{ steps.os_version.outputs.version }}-qltest-cargo-${{ hashFiles('ql/**/Cargo.lock') }}
+          key: ${{ runner.os }}-qltest-cargo-${{ hashFiles('ql/**/Cargo.lock') }}
       - name: Build Extractor
-        run: cd ql; env "PATH=$PATH:`dirname ${CODEQL}`" ./scripts/create-extractor-pack.sh
+        run: cd ql; env "PATH=$PATH:`dirname ${CODEQL}`" ./create-extractor-pack.sh
         env:
           CODEQL: ${{ steps.find-codeql.outputs.codeql-path }}
       - name: Checkout ${{ matrix.repo }}

.github/workflows/ql-for-ql-tests.yml

@@ -6,13 +6,11 @@ on:
     paths:
       - "ql/**"
       - codeql-workspace.yml
-      - .github/workflows/ql-for-ql-tests.yml
   pull_request:
     branches: [main]
     paths:
       - "ql/**"
       - codeql-workspace.yml
-      - .github/workflows/ql-for-ql-tests.yml
 
 env:
   CARGO_TERM_COLOR: always
@@ -24,86 +22,33 @@ jobs:
       - uses: actions/checkout@v3
       - name: Find codeql
         id: find-codeql
-        uses: github/codeql-action/init@v2
+        uses: github/codeql-action/init@aa93aea877e5fb8841bcb1193f672abf6e9f2980
         with:
           languages: javascript # does not matter
-      - uses: ./.github/actions/os-version
-        id: os_version
       - uses: actions/cache@v3
         with:
           path: |
             ~/.cargo/registry
             ~/.cargo/git
             ql/target
-          key: ${{ runner.os }}-${{ steps.os_version.outputs.version }}-qltest-cargo-${{ hashFiles('ql/rust-toolchain.toml', 'ql/**/Cargo.lock') }}
-      - name: Check formatting
-        run: cd ql; cargo fmt --all -- --check
+          key: ${{ runner.os }}-qltest-cargo-${{ hashFiles('ql/**/Cargo.lock') }}
       - name: Build extractor
         run: |
           cd ql;
           codeqlpath=$(dirname ${{ steps.find-codeql.outputs.codeql-path }});
-          env "PATH=$PATH:$codeqlpath" ./scripts/create-extractor-pack.sh
-      - name: Cache compilation cache
-        id: query-cache
-        uses: ./.github/actions/cache-query-compilation
-        with: 
-          key: ql-for-ql-tests
+          env "PATH=$PATH:$codeqlpath" ./create-extractor-pack.sh
       - name: Run QL tests
         run: |
-          "${CODEQL}" test run --check-databases --check-unused-labels --check-repeated-labels --check-redefined-labels --check-use-before-definition --search-path "${{ github.workspace }}/ql/extractor-pack" --consistency-queries ql/ql/consistency-queries --compilation-cache "${{ steps.query-cache.outputs.cache-dir }}" ql/ql/test
+          "${CODEQL}" test run --check-databases --check-unused-labels --check-repeated-labels --check-redefined-labels --check-use-before-definition --search-path "${{ github.workspace }}/ql/extractor-pack" --consistency-queries ql/ql/consistency-queries ql/ql/test
         env:
           CODEQL: ${{ steps.find-codeql.outputs.codeql-path }}
-
-  other-os: 
-    strategy:
-      matrix:
-        os: [macos-latest, windows-latest]
-    needs: [qltest]
-    runs-on: ${{ matrix.os }}
-    steps:
-      - uses: actions/checkout@v3
-      - name: Install GNU tar 
-        if: runner.os == 'macOS'
+      - name: Check QL formatting
         run: |
-          brew install gnu-tar
-          echo "/usr/local/opt/gnu-tar/libexec/gnubin" >> $GITHUB_PATH
-      - name: Find codeql
-        id: find-codeql
-        uses: github/codeql-action/init@v2
-        with:
-          languages: javascript # does not matter
-      - uses: ./.github/actions/os-version
-        id: os_version
-      - uses: actions/cache@v3
-        with:
-          path: |
-            ~/.cargo/registry
-            ~/.cargo/git
-            ql/target
-          key: ${{ runner.os }}-${{ steps.os_version.outputs.version }}-qltest-cargo-${{ hashFiles('ql/rust-toolchain.toml', 'ql/**/Cargo.lock') }}
-      - name: Build extractor
-        if: runner.os != 'Windows'
-        run: |
-          cd ql;
-          codeqlpath=$(dirname ${{ steps.find-codeql.outputs.codeql-path }});
-          env "PATH=$PATH:$codeqlpath" ./scripts/create-extractor-pack.sh
-      - name: Build extractor (Windows)
-        if: runner.os == 'Windows'
-        shell: pwsh
-        run: |
-          cd ql;
-          $Env:PATH += ";$(dirname ${{ steps.find-codeql.outputs.codeql-path }})"
-          pwsh ./scripts/create-extractor-pack.ps1
-      - name: Run a single QL tests - Unix
-        if: runner.os != 'Windows'
-        run: |
-          "${CODEQL}" test run --check-databases --search-path "${{ github.workspace }}/ql/extractor-pack" ql/ql/test/queries/style/DeadCode/DeadCode.qlref
+          find ql/ql "(" -name "*.ql" -or -name "*.qll" ")" -print0 | xargs -0 "${CODEQL}" query format --check-only
         env:
           CODEQL: ${{ steps.find-codeql.outputs.codeql-path }}
-      - name: Run a single QL tests - Windows
-        if: runner.os == 'Windows'
-        shell: pwsh
+      - name: Check QL compilation
         run: |
-          $Env:PATH += ";$(dirname ${{ steps.find-codeql.outputs.codeql-path }})"
-          codeql test run --check-databases --search-path "${{ github.workspace }}/ql/extractor-pack" ql/ql/test/queries/style/DeadCode/DeadCode.qlref
-      
+          "${CODEQL}" query compile --check-only --threads=4 --warnings=error --search-path "${{ github.workspace }}/ql/extractor-pack" "ql/ql/src" "ql/ql/examples"
+        env:
+          CODEQL: ${{ steps.find-codeql.outputs.codeql-path }}

.github/workflows/query-list.yml

@@ -10,7 +10,6 @@ on:
   pull_request:
     paths:
       - '.github/workflows/query-list.yml'
-      - '.github/actions/fetch-codeql/action.yml'
       - 'misc/scripts/generate-code-scanning-query-list.py'
 
 jobs:
@@ -30,6 +29,8 @@ jobs:
     - name: Download CodeQL CLI
       # Look under the `codeql` directory, as this is where we checked out the `github/codeql` repo
       uses: ./codeql/.github/actions/fetch-codeql
+    - name: Unzip CodeQL CLI
+      run: unzip -d codeql-cli codeql-linux64.zip
     - name: Build code scanning query list
       run: |
         python codeql/misc/scripts/generate-code-scanning-query-list.py > code-scanning-query-list.csv

.github/workflows/ruby-build.yml

@@ -5,7 +5,6 @@ on:
     paths:
       - "ruby/**"
       - .github/workflows/ruby-build.yml
-      - .github/actions/fetch-codeql/action.yml
       - codeql-workspace.yml
     branches:
       - main
@@ -14,7 +13,6 @@ on:
     paths:
       - "ruby/**"
       - .github/workflows/ruby-build.yml
-      - .github/actions/fetch-codeql/action.yml
       - codeql-workspace.yml
     branches:
       - main
@@ -48,51 +46,24 @@ jobs:
         run: |
           brew install gnu-tar
           echo "/usr/local/opt/gnu-tar/libexec/gnubin" >> $GITHUB_PATH
-      - name: Install cargo-cross
-        if: runner.os == 'Linux'
-        run: cargo install cross --version 0.2.5
-      - uses: ./.github/actions/os-version
-        id: os_version
-      - name: Cache entire extractor
-        uses: actions/cache@v3
-        id: cache-extractor
-        with:
-          path: |
-            ruby/extractor/target/release/codeql-extractor-ruby
-            ruby/extractor/target/release/codeql-extractor-ruby.exe
-            ruby/extractor/ql/lib/codeql/ruby/ast/internal/TreeSitter.qll
-          key: ${{ runner.os }}-${{ steps.os_version.outputs.version }}-ruby-extractor-${{ hashFiles('ruby/extractor/rust-toolchain.toml', 'ruby/extractor/Cargo.lock') }}-${{ hashFiles('shared/tree-sitter-extractor') }}-${{ hashFiles('ruby/extractor/**/*.rs') }}
       - uses: actions/cache@v3
-        if: steps.cache-extractor.outputs.cache-hit != 'true'
         with:
           path: |
             ~/.cargo/registry
             ~/.cargo/git
             ruby/target
-          key: ${{ runner.os }}-${{ steps.os_version.outputs.version }}-ruby-rust-cargo-${{ hashFiles('ruby/extractor/rust-toolchain.toml', 'ruby/extractor/**/Cargo.lock') }}
+          key: ${{ runner.os }}-ruby-rust-cargo-${{ hashFiles('ruby/rust-toolchain.toml', 'ruby/**/Cargo.lock') }}
       - name: Check formatting
-        if: steps.cache-extractor.outputs.cache-hit != 'true'
-        run: cd extractor && cargo fmt --all -- --check
+        run: cargo fmt --all -- --check
       - name: Build
-        if: steps.cache-extractor.outputs.cache-hit != 'true'
-        run: cd extractor && cargo build --verbose
+        run: cargo build --verbose
       - name: Run tests
-        if: steps.cache-extractor.outputs.cache-hit != 'true'
-        run: cd extractor && cargo test --verbose
-      # On linux, build the extractor via cross in a centos7 container.
-      # This ensures we don't depend on glibc > 2.17.
-      - name: Release build (linux)
-        if: steps.cache-extractor.outputs.cache-hit != 'true' && runner.os == 'Linux'
-        run: |
-          cd extractor
-          cross build --release
-          mv target/x86_64-unknown-linux-gnu/release/codeql-extractor-ruby target/release/
-      - name: Release build (windows and macos)
-        if: steps.cache-extractor.outputs.cache-hit != 'true' && runner.os != 'Linux'
-        run: cd extractor && cargo build --release
+        run: cargo test --verbose
+      - name: Release build
+        run: cargo build --release
       - name: Generate dbscheme
-        if: ${{ matrix.os == 'ubuntu-latest' && steps.cache-extractor.outputs.cache-hit != 'true'}}
-        run: extractor/target/release/codeql-extractor-ruby generate --dbscheme ql/lib/ruby.dbscheme --library ql/lib/codeql/ruby/ast/internal/TreeSitter.qll
+        if: ${{ matrix.os == 'ubuntu-latest' }}
+        run: target/release/ruby-generator --dbscheme ql/lib/ruby.dbscheme --library ql/lib/codeql/ruby/ast/internal/TreeSitter.qll
       - uses: actions/upload-artifact@v3
         if: ${{ matrix.os == 'ubuntu-latest' }}
         with:
@@ -107,38 +78,37 @@ jobs:
         with:
           name: extractor-${{ matrix.os }}
           path: |
-            ruby/extractor/target/release/codeql-extractor-ruby
-            ruby/extractor/target/release/codeql-extractor-ruby.exe
+            ruby/target/release/ruby-autobuilder
+            ruby/target/release/ruby-autobuilder.exe
+            ruby/target/release/ruby-extractor
+            ruby/target/release/ruby-extractor.exe
           retention-days: 1
   compile-queries:
-    runs-on: ubuntu-latest-xl
+    runs-on: ubuntu-latest
+    env:
+      CODEQL_THREADS: 4 # TODO: remove this once it's set by the CLI
     steps:
       - uses: actions/checkout@v3
       - name: Fetch CodeQL
-        uses: ./.github/actions/fetch-codeql
-      - name: Cache compilation cache
-        id: query-cache
-        uses: ./.github/actions/cache-query-compilation
-        with: 
-          key: ruby-build
+        run: |
+          LATEST=$(gh release list --repo https://github.com/github/codeql-cli-binaries | cut -f 1 | grep -v beta | sort --version-sort | tail -1)
+          gh release download --repo https://github.com/github/codeql-cli-binaries --pattern codeql-linux64.zip "$LATEST"
+          unzip -q codeql-linux64.zip
+        env:
+          GITHUB_TOKEN: ${{ github.token }}
       - name: Build Query Pack
         run: |
-          PACKS=${{ runner.temp }}/query-packs
-          rm -rf $PACKS
-          codeql pack create ../misc/suite-helpers --output "$PACKS"
-          codeql pack create ../shared/regex --output "$PACKS"
-          codeql pack create ../shared/ssa --output "$PACKS"
-          codeql pack create ../shared/tutorial --output "$PACKS"
-          codeql pack create ql/lib --output "$PACKS"
-          codeql pack create -j0 ql/src --output "$PACKS" --compilation-cache "${{ steps.query-cache.outputs.cache-dir }}"
-          PACK_FOLDER=$(readlink -f "$PACKS"/codeql/ruby-queries/*)
-          codeql generate query-help --format=sarifv2.1.0 --output="${PACK_FOLDER}/rules.sarif" ql/src
+          codeql/codeql pack create ql/lib --output target/packs
+          codeql/codeql pack install ql/src
+          codeql/codeql pack create ql/src --output target/packs
+          PACK_FOLDER=$(readlink -f target/packs/codeql/ruby-queries/*)
+          codeql/codeql generate query-help --format=sarifv2.1.0 --output="${PACK_FOLDER}/rules.sarif" ql/src
           (cd ql/src; find queries \( -name '*.qhelp' -o -name '*.rb' -o -name '*.erb' \) -exec bash -c 'mkdir -p "'"${PACK_FOLDER}"'/$(dirname "{}")"' \; -exec cp "{}" "${PACK_FOLDER}/{}" \;)
       - uses: actions/upload-artifact@v3
         with:
           name: codeql-ruby-queries
           path: |
-            ${{ runner.temp }}/query-packs/*
+            ruby/target/packs/*
           retention-days: 1
 
   package:
@@ -166,10 +136,13 @@ jobs:
           mkdir -p ruby
           cp -r codeql-extractor.yml tools ql/lib/ruby.dbscheme.stats ruby/
           mkdir -p ruby/tools/{linux64,osx64,win64}
-          cp linux64/codeql-extractor-ruby ruby/tools/linux64/extractor
-          cp osx64/codeql-extractor-ruby ruby/tools/osx64/extractor
-          cp win64/codeql-extractor-ruby.exe ruby/tools/win64/extractor.exe
-          chmod +x ruby/tools/{linux64,osx64}/extractor
+          cp linux64/ruby-autobuilder ruby/tools/linux64/autobuilder
+          cp osx64/ruby-autobuilder ruby/tools/osx64/autobuilder
+          cp win64/ruby-autobuilder.exe ruby/tools/win64/autobuilder.exe
+          cp linux64/ruby-extractor ruby/tools/linux64/extractor
+          cp osx64/ruby-extractor ruby/tools/osx64/extractor
+          cp win64/ruby-extractor.exe ruby/tools/win64/extractor.exe
+          chmod +x ruby/tools/{linux64,osx64}/{autobuilder,extractor}
           zip -rq codeql-ruby.zip ruby
       - uses: actions/upload-artifact@v3
         with:
@@ -207,9 +180,18 @@ jobs:
     needs: [package]
     steps:
       - uses: actions/checkout@v3
+        with:
+          repository: Shopify/example-ruby-app
+          ref: 67a0decc5eb550f3a9228eda53925c3afd40dfe9
       - name: Fetch CodeQL
-        uses: ./.github/actions/fetch-codeql
-
+        shell: bash
+        run: |
+          LATEST=$(gh release list --repo https://github.com/github/codeql-cli-binaries | cut -f 1 | grep -v beta | sort --version-sort | tail -1)
+          gh release download --repo https://github.com/github/codeql-cli-binaries --pattern codeql.zip "$LATEST"
+          unzip -q codeql.zip
+        env:
+          GITHUB_TOKEN: ${{ github.token }}
+        working-directory: ${{ runner.temp }}
       - name: Download Ruby bundle
         uses: actions/download-artifact@v3
         with:
@@ -218,67 +200,27 @@ jobs:
       - name: Unzip Ruby bundle
         shell: bash
         run: unzip -q -d "${{ runner.temp }}/ruby-bundle" "${{ runner.temp }}/codeql-ruby-bundle.zip"
-
+      - name: Prepare test files
+        shell: bash
+        run: |
+          echo "import ruby select count(File f)" > "test.ql"
+          echo "| 4 |" > "test.expected"
+          echo 'name: sample-tests
+          version: 0.0.0
+          dependencies:
+            codeql/ruby-all: 0.0.1
+          extractor: ruby
+          tests: .
+          ' > qlpack.yml
       - name: Run QL test
         shell: bash
         run: |
-          codeql test run --search-path "${{ runner.temp }}/ruby-bundle" --additional-packs "${{ runner.temp }}/ruby-bundle" ruby/ql/test/library-tests/ast/constants/
+          "${{ runner.temp }}/codeql/codeql" test run --search-path "${{ runner.temp }}/ruby-bundle" --additional-packs "${{ runner.temp }}/ruby-bundle" .
       - name: Create database
         shell: bash
         run: |
-          codeql database create --search-path "${{ runner.temp }}/ruby-bundle" --language ruby --source-root ruby/ql/test/library-tests/ast/constants/ ../database
+          "${{ runner.temp }}/codeql/codeql" database create --search-path "${{ runner.temp }}/ruby-bundle" --language ruby --source-root . ../database
       - name: Analyze database
         shell: bash
         run: |
-          codeql database analyze --search-path "${{ runner.temp }}/ruby-bundle" --format=sarifv2.1.0 --output=out.sarif ../database ruby-code-scanning.qls
-
-  # This is a copy of the 'test' job that runs in a centos7 container.
-  # This tests that the extractor works correctly on systems with an old glibc.
-  test-centos7:
-    defaults:
-      run:
-        working-directory: ${{ github.workspace }}
-    strategy:
-      fail-fast: false
-    runs-on: ubuntu-latest
-    container:
-      image: centos:centos7
-      env:
-        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-    needs: [package]
-    steps:
-      - name: Install gh cli
-        run: |
-          yum-config-manager --add-repo https://cli.github.com/packages/rpm/gh-cli.repo
-          # fetch-codeql requires unzip and jq
-          # jq is available in epel-release (https://docs.fedoraproject.org/en-US/epel/)
-          yum install -y gh unzip epel-release
-          yum install -y jq
-      - uses: actions/checkout@v3
-      - name: Fetch CodeQL
-        uses: ./.github/actions/fetch-codeql
-
-      # Due to a bug in Actions, we can't use runner.temp in the run blocks here.
-      # https://github.com/actions/runner/issues/2185
-
-      - name: Download Ruby bundle
-        uses: actions/download-artifact@v3
-        with:
-          name: codeql-ruby-bundle
-          path: ${{ runner.temp }}
-      - name: Unzip Ruby bundle
-        shell: bash
-        run: unzip -q -d "$RUNNER_TEMP"/ruby-bundle "$RUNNER_TEMP"/codeql-ruby-bundle.zip
-
-      - name: Run QL test
-        shell: bash
-        run: |
-          codeql test run --search-path "$RUNNER_TEMP"/ruby-bundle --additional-packs "$RUNNER_TEMP"/ruby-bundle ruby/ql/test/library-tests/ast/constants/
-      - name: Create database
-        shell: bash
-        run: |
-          codeql database create --search-path "$RUNNER_TEMP"/ruby-bundle --language ruby --source-root ruby/ql/test/library-tests/ast/constants/ ../database
-      - name: Analyze database
-        shell: bash
-        run: |
-          codeql database analyze --search-path "$RUNNER_TEMP"/ruby-bundle --format=sarifv2.1.0 --output=out.sarif ../database ruby-code-scanning.qls
+          "${{ runner.temp }}/codeql/codeql" database analyze --search-path "${{ runner.temp }}/ruby-bundle" --format=sarifv2.1.0 --output=out.sarif ../database ruby-code-scanning.qls

.github/workflows/ruby-qltest.yml

@@ -4,9 +4,7 @@ on:
   push:
     paths:
       - "ruby/**"
-      - "shared/**"
-      - .github/workflows/ruby-build.yml
-      - .github/actions/fetch-codeql/action.yml
+      - .github/workflows/ruby-qltest.yml
       - codeql-workspace.yml
     branches:
       - main
@@ -15,7 +13,6 @@ on:
     paths:
       - "ruby/**"
       - .github/workflows/ruby-qltest.yml
-      - .github/actions/fetch-codeql/action.yml
       - codeql-workspace.yml
     branches:
       - main
@@ -29,6 +26,23 @@ defaults:
     working-directory: ruby
 
 jobs:
+  qlformat:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+      - uses: ./.github/actions/fetch-codeql
+      - name: Check QL formatting
+        run: find ql "(" -name "*.ql" -or -name "*.qll" ")" -print0 | xargs -0 codeql query format --check-only
+  qlcompile:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+      - uses: ./.github/actions/fetch-codeql
+      - name: Check QL compilation
+        run: |
+          codeql query compile --check-only --threads=0 --ram 5000 --warnings=error "ql/src" "ql/examples"
+        env:
+          GITHUB_TOKEN: ${{ github.token }}
   qlupgrade:
     runs-on: ubuntu-latest
     steps:
@@ -49,20 +63,17 @@ jobs:
            xargs codeql execute upgrades testdb
           diff -q testdb/ruby.dbscheme downgrades/initial/ruby.dbscheme
   qltest:
-    runs-on: ubuntu-latest-xl
+    runs-on: ubuntu-latest
     strategy:
       fail-fast: false
+      matrix:
+        slice: ["1/2", "2/2"]
     steps:
       - uses: actions/checkout@v3
       - uses: ./.github/actions/fetch-codeql
       - uses: ./ruby/actions/create-extractor-pack
-      - name: Cache compilation cache
-        id: query-cache
-        uses: ./.github/actions/cache-query-compilation
-        with: 
-          key: ruby-qltest
       - name: Run QL tests
         run: |
-          codeql test run --threads=0 --ram 50000 --search-path "${{ github.workspace }}/ruby/extractor-pack" --check-databases --check-undefined-labels --check-unused-labels --check-repeated-labels --check-redefined-labels --check-use-before-definition --consistency-queries ql/consistency-queries ql/test --compilation-cache "${{ steps.query-cache.outputs.cache-dir }}"
+          codeql test run --threads=0 --ram 5000 --slice ${{ matrix.slice }} --search-path "${{ github.workspace }}/ruby/extractor-pack" --check-databases --check-unused-labels --check-repeated-labels --check-redefined-labels --check-use-before-definition --consistency-queries ql/consistency-queries ql/test
         env:
           GITHUB_TOKEN: ${{ github.token }}

.github/workflows/swift-codegen.yml

@@ -0,0 +1,36 @@
+name: "Swift: Check code generation"
+
+on:
+  pull_request:
+    paths:
+      - "swift/**"
+      - .github/workflows/swift-codegen.yml
+    branches:
+      - main
+
+jobs:
+  codegen:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+      - uses: ./.github/actions/fetch-codeql
+      - uses: bazelbuild/setup-bazelisk@v2
+      - uses: actions/setup-python@v3
+      - uses: pre-commit/action@v3.0.0
+        name: Check that python code is properly formatted
+        with:
+          extra_args: autopep8 --all-files
+      - name: Run unit tests
+        run: |
+          bazel test //swift/codegen/test --test_output=errors
+      - uses: pre-commit/action@v3.0.0
+        name: Check that QL generated code was checked in
+        with:
+          extra_args: swift-codegen --all-files
+      - name: Generate C++ files
+        run: |
+          bazel run //swift/codegen:codegen -- --generate=trap,cpp --cpp-output=$PWD/swift-generated-cpp-files
+      - uses: actions/upload-artifact@v3
+        with:
+          name: swift-generated-cpp-files
+          path: swift-generated-cpp-files/**

.github/workflows/swift-qltest.yml

@@ -0,0 +1,40 @@
+name: "Swift: Run QL Tests"
+
+on:
+  pull_request:
+    paths:
+      - "swift/**"
+      - .github/workflows/swift-qltest.yml
+      - codeql-workspace.yml
+    branches:
+      - main
+defaults:
+  run:
+    working-directory: swift
+
+jobs:
+  qlformat:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+      - uses: ./.github/actions/fetch-codeql
+      - name: Check QL formatting
+        run: find ql "(" -name "*.ql" -or -name "*.qll" ")" -print0 | xargs -0 codeql query format --check-only
+  qltest:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os : [ubuntu-20.04, macos-latest]
+    steps:
+      - uses: actions/checkout@v3
+      - uses: ./.github/actions/fetch-codeql
+      - uses: bazelbuild/setup-bazelisk@v2
+      - name: Build Swift extractor
+        run: |
+          bazel run //swift:create-extractor-pack
+      - name: Run QL tests
+        run: |
+          codeql test run --threads=0 --ram 5000 --search-path "${{ github.workspace }}/swift/extractor-pack" --check-databases --check-unused-labels --check-repeated-labels --check-redefined-labels --check-use-before-definition ql/test
+        env:
+          GITHUB_TOKEN: ${{ github.token }}

.github/workflows/swift.yml

@@ -1,107 +0,0 @@
-name: "Swift"
-
-on:
-  pull_request:
-    paths:
-      - "swift/**"
-      - "misc/bazel/**"
-      - "misc/codegen/**"
-      - "*.bazel*"
-      - .github/workflows/swift.yml
-      - .github/actions/**
-      - codeql-workspace.yml
-      - .pre-commit-config.yaml
-      - "!**/*.md"
-      - "!**/*.qhelp"
-    branches:
-      - main
-      - rc/*
-      - codeql-cli-*
-  push:
-    paths:
-      - "swift/**"
-      - "misc/bazel/**"
-      - "misc/codegen/**"
-      - "*.bazel*"
-      - .github/workflows/swift.yml
-      - .github/actions/**
-      - codeql-workspace.yml
-      - "!**/*.md"
-      - "!**/*.qhelp"
-    branches:
-      - main
-      - rc/*
-      - codeql-cli-*
-
-jobs:
-  # not using a matrix as you cannot depend on a specific job in a matrix, and we want to start linux checks
-  # without waiting for the macOS build
-  build-and-test-macos:
-    runs-on: macos-12-xl
-    steps:
-      - uses: actions/checkout@v3
-      - uses: ./swift/actions/build-and-test
-  build-and-test-linux:
-    runs-on: ubuntu-latest-xl
-    steps:
-      - uses: actions/checkout@v3
-      - uses: ./swift/actions/build-and-test
-  qltests-linux:
-    needs: build-and-test-linux
-    runs-on: ubuntu-latest-xl
-    steps:
-      - uses: actions/checkout@v3
-      - uses: ./swift/actions/run-ql-tests
-  qltests-macos:
-    if : ${{ github.event_name == 'pull_request' }}
-    needs: build-and-test-macos
-    runs-on: macos-12-xl
-    steps:
-      - uses: actions/checkout@v3
-      - uses: ./swift/actions/run-ql-tests
-  integration-tests-linux:
-    needs: build-and-test-linux
-    runs-on: ubuntu-latest-xl
-    steps:
-      - uses: actions/checkout@v3
-      - uses: ./swift/actions/run-integration-tests
-  integration-tests-macos:
-    if : ${{ github.event_name == 'pull_request' }}
-    needs: build-and-test-macos
-    runs-on: macos-12-xl
-    timeout-minutes: 60
-    steps:
-      - uses: actions/checkout@v3
-      - uses: ./swift/actions/run-integration-tests
-  codegen:
-    if : ${{ github.event_name == 'pull_request' }}
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-      - uses: bazelbuild/setup-bazelisk@v2
-      - uses: actions/setup-python@v4
-        with:
-          python-version-file: 'swift/.python-version'
-      - uses: pre-commit/action@v3.0.0
-        name: Check that python code is properly formatted
-        with:
-          extra_args: autopep8 --all-files
-      - uses: ./.github/actions/fetch-codeql
-      - uses: pre-commit/action@v3.0.0
-        name: Check that QL generated code was checked in
-        with:
-          extra_args: swift-codegen --all-files
-      - name: Generate C++ files
-        run: |
-          bazel run //swift/codegen:codegen -- --generate=trap,cpp --cpp-output=$PWD/generated-cpp-files
-      - uses: actions/upload-artifact@v3
-        with:
-          name: swift-generated-cpp-files
-          path: generated-cpp-files/**
-  database-upgrade-scripts:
-    if : ${{ github.event_name == 'pull_request' }}
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-      - uses: ./.github/actions/fetch-codeql
-      - uses: ./swift/actions/database-upgrade-scripts

.github/workflows/sync-files.yml

@@ -17,6 +17,4 @@ jobs:
       - uses: actions/checkout@v3
       - name: Check synchronized files
         run: python config/sync-files.py
-      - name: Check dbscheme fragments
-        run: python config/sync-dbscheme-fragments.py
 

.github/workflows/tree-sitter-extractor-test.yml

@@ -1,46 +0,0 @@
-name: Test tree-sitter-extractor
-
-on:
-  push:
-    paths:
-      - "shared/tree-sitter-extractor/**"
-      - .github/workflows/tree-sitter-extractor-test.yml
-    branches:
-      - main
-      - "rc/*"
-  pull_request:
-    paths:
-      - "shared/tree-sitter-extractor/**"
-      - .github/workflows/tree-sitter-extractor-test.yml
-    branches:
-      - main
-      - "rc/*"
-
-env:
-  CARGO_TERM_COLOR: always
-
-defaults:
-  run:
-    working-directory: shared/tree-sitter-extractor
-
-jobs:
-  test:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-      - name: Check formatting
-        run: cargo fmt --all -- --check
-      - name: Run tests
-        run: cargo test --verbose
-  fmt:
-    runs-on: ubuntu-latest  
-    steps:
-      - uses: actions/checkout@v3
-      - name: Check formatting
-        run: cargo fmt --check
-  clippy:
-    runs-on: ubuntu-latest  
-    steps:
-      - uses: actions/checkout@v3
-      - name: Run clippy
-        run: cargo clippy -- --no-deps -D warnings -A clippy::new_without_default -A clippy::too_many_arguments

.github/workflows/validate-change-notes.yml

@@ -5,7 +5,6 @@ on:
     paths:
       - "*/ql/*/change-notes/**/*"
       - ".github/workflows/validate-change-notes.yml"
-      - ".github/actions/fetch-codeql/action.yml"
     branches:
       - main
       - "rc/*"
@@ -13,7 +12,6 @@ on:
     paths:
       - "*/ql/*/change-notes/**/*"
       - ".github/workflows/validate-change-notes.yml"
-      - ".github/actions/fetch-codeql/action.yml"
 
 jobs:
   check-change-note:

.gitignore

@@ -27,6 +27,8 @@
 # It's useful (though not required) to be able to unpack codeql in the ql checkout itself
 /codeql/
 
+csharp/extractor/Semmle.Extraction.CSharp.Driver/Properties/launchSettings.json
+
 # Avoid committing cached package components
 .codeql
 

.pre-commit-config.yaml

@@ -5,9 +5,9 @@ repos:
     rev: v3.2.0
     hooks:
       - id: trailing-whitespace
-        exclude: /test/.*$(?<!\.ql)(?<!\.qll)(?<!\.qlref)|.*\.patch
+        exclude: /test/.*$(?<!\.ql)(?<!\.qll)(?<!\.qlref)
       - id: end-of-file-fixer
-        exclude: /test/.*$(?<!\.ql)(?<!\.qll)(?<!\.qlref)|.*\.patch
+        exclude: /test/.*$(?<!\.ql)(?<!\.qll)(?<!\.qlref)
 
   - repo: https://github.com/pre-commit/mirrors-clang-format
     rev: v13.0.1
@@ -19,12 +19,7 @@ repos:
     rev: v1.6.0
     hooks:
       - id: autopep8
-        files: ^misc/codegen/.*\.py
-
-  - repo: https://github.com/warchant/pre-commit-buildifier
-    rev: 0.0.2
-    hooks:
-      - id: buildifier
+        files: ^swift/codegen/.*\.py
 
   - repo: local
     hooks:
@@ -36,7 +31,7 @@ repos:
 
       - id: sync-files
         name: Fix files required to be identical
-        files: \.(qll?|qhelp|swift)$|^config/identical-files\.json$
+        files: \.(qll?|qhelp|swift)$
         language: system
         entry: python3 config/sync-files.py --latest
         pass_filenames: false
@@ -49,7 +44,7 @@ repos:
 
       - id: swift-codegen
         name: Run Swift checked in code generation
-        files: ^swift/(schema.py$|codegen/|.*/generated/|ql/lib/(swift\.dbscheme$|codeql/swift/elements)|ql/\.generated.list)
+        files: ^swift/(codegen/|.*/generated/|ql/lib/(swift\.dbscheme$|codeql/swift/elements))
         language: system
         entry: bazel run //swift/codegen -- --quiet
         pass_filenames: false
@@ -58,5 +53,5 @@ repos:
         name: Run Swift code generation unit tests
         files: ^swift/codegen/.*\.py$
         language: system
-        entry: bazel test //misc/codegen/test
+        entry: bazel test //swift/codegen/test
         pass_filenames: false

.vscode/settings.json

@@ -1,5 +1,3 @@
 {
-  "omnisharp.autoStart": false,
-  "cmake.sourceDirectory": "${workspaceFolder}/swift",
-  "cmake.buildDirectory": "${workspaceFolder}/bazel-cmake-build"
+    "omnisharp.autoStart": false
 }

.vscode/tasks.json

@@ -22,22 +22,6 @@
                 "command": "${config:python.pythonPath}",
             },
             "problemMatcher": []
-        },
-        {
-            "label": "Accept .expected changes from CI",
-            "type": "process",
-            // Non-Windows OS will usually have Python 3 already installed at /usr/bin/python3.
-            "command": "python3",
-            "args": [
-                "misc/scripts/accept-expected-changes-from-ci.py"
-            ],
-            "group": "build",
-            "windows": {
-                // On Windows, use whatever Python interpreter is configured for this workspace. The default is
-                // just `python`, so if Python is already on the path, this will find it.
-                "command": "${config:python.pythonPath}",
-            },
-            "problemMatcher": []
         }
     ]
-}
+}

CODEOWNERS

@@ -5,17 +5,24 @@
 /javascript/ @github/codeql-javascript
 /python/ @github/codeql-python
 /ruby/ @github/codeql-ruby
-/swift/ @github/codeql-swift
-/misc/codegen/ @github/codeql-swift
+/swift/ @github/codeql-c
 /java/kotlin-extractor/ @github/codeql-kotlin
+/java/kotlin-explorer/ @github/codeql-kotlin
 
 # ML-powered queries
 /javascript/ql/experimental/adaptivethreatmodeling/ @github/codeql-ml-powered-queries-reviewers
 
+# Notify members of codeql-go about PRs to the shared data-flow library files
+/java/ql/src/semmle/code/java/dataflow/internal/DataFlowImpl.qll @github/codeql-java @github/codeql-go
+/java/ql/src/semmle/code/java/dataflow/internal/DataFlowImpl2.qll @github/codeql-java @github/codeql-go
+/java/ql/src/semmle/code/java/dataflow/internal/DataFlowImplCommon.qll @github/codeql-java @github/codeql-go
+/java/ql/src/semmle/code/java/dataflow/internal/tainttracking1/TaintTrackingImpl.qll @github/codeql-java @github/codeql-go
+/java/ql/src/semmle/code/java/dataflow/internal/tainttracking2/TaintTrackingImpl.qll @github/codeql-java @github/codeql-go
+
 # CodeQL tools and associated docs
-/docs/codeql/codeql-cli/ @github/codeql-cli-reviewers
-/docs/codeql/codeql-for-visual-studio-code/ @github/codeql-vscode-reviewers
-/docs/codeql/ql-language-reference/ @github/codeql-frontend-reviewers
+/docs/codeql-cli/ @github/codeql-cli-reviewers
+/docs/codeql-for-visual-studio-code/ @github/codeql-vscode-reviewers
+/docs/ql-language-reference/ @github/codeql-frontend-reviewers
 /docs/query-*-style-guide.md @github/codeql-analysis-reviewers
 
 # QL for QL reviewers
@@ -23,8 +30,6 @@
 
 # Bazel (excluding BUILD.bazel files)
 WORKSPACE.bazel @github/codeql-ci-reviewers
-.bazelversion @github/codeql-ci-reviewers
-.bazelrc @github/codeql-ci-reviewers
 **/*.bzl @github/codeql-ci-reviewers
 
 # Documentation etc
@@ -33,12 +38,7 @@ WORKSPACE.bazel @github/codeql-ci-reviewers
 
 # Workflows
 /.github/workflows/ @github/codeql-ci-reviewers
-/.github/workflows/atm-* @github/codeql-ml-powered-queries-reviewers
 /.github/workflows/go-* @github/codeql-go
 /.github/workflows/js-ml-tests.yml @github/codeql-ml-powered-queries-reviewers
 /.github/workflows/ql-for-ql-* @github/codeql-ql-for-ql-reviewers
 /.github/workflows/ruby-* @github/codeql-ruby
-/.github/workflows/swift.yml @github/codeql-swift
-
-# Misc
-/misc/scripts/accept-expected-changes-from-ci.py @RasmusWL

CONTRIBUTING.md

@@ -14,20 +14,17 @@ If you have an idea for a query that you would like to share with other CodeQL u
 
 1. **Directory structure**
 
-    There are eight language-specific query directories in this repository:
+    There are six language-specific query directories in this repository:
 
       * C/C++: `cpp/ql/src`
       * C#: `csharp/ql/src`
-      * Go: `go/ql/src`
-      * Java/Kotlin: `java/ql/src`
+      * Java: `java/ql/src`
       * JavaScript: `javascript/ql/src`
       * Python: `python/ql/src`
       * Ruby: `ruby/ql/src`
-      * Swift: `swift/ql/src`
 
     Each language-specific directory contains further subdirectories that group queries based on their `@tags` or purpose.
     - Experimental queries and libraries are stored in the `experimental` subdirectory within each language-specific directory in the [CodeQL repository](https://github.com/github/codeql). For example, experimental Java queries and libraries are stored in `java/ql/src/experimental` and any corresponding tests in `java/ql/test/experimental`.
-    - Experimental queries need to include `experimental` in their `@tags`
     - The structure of an `experimental` subdirectory mirrors the structure of its parent directory.
     - Select or create an appropriate directory in `experimental` based on the existing directory structure of `experimental` or its parent directory.
 

README.md

@@ -4,14 +4,13 @@ This open source repository contains the standard CodeQL libraries and queries t
 
 ## How do I learn CodeQL and run queries?
 
-There is [extensive documentation](https://codeql.github.com/docs/) on getting started with writing CodeQL using the [CodeQL extension for Visual Studio Code](https://codeql.github.com/docs/codeql-for-visual-studio-code/) and the [CodeQL CLI](https://codeql.github.com/docs/codeql-cli/).
+There is [extensive documentation](https://codeql.github.com/docs/) on getting started with writing CodeQL.
+You can use the [CodeQL for Visual Studio Code](https://codeql.github.com/docs/codeql-for-visual-studio-code/) extension or the [interactive query console](https://lgtm.com/help/lgtm/using-query-console) on LGTM.com (Semmle Legacy product) to try out your queries on any open source project that's currently being analyzed.
 
 ## Contributing
 
 We welcome contributions to our standard library and standard checks. Do you have an idea for a new check, or how to improve an existing query? Then please go ahead and open a pull request! Before you do, though, please take the time to read our [contributing guidelines](CONTRIBUTING.md). You can also consult our [style guides](https://github.com/github/codeql/tree/main/docs) to learn how to format your code for consistency and clarity, how to write query metadata, and how to write query help documentation for your query.
 
-For information on contributing to CodeQL documentation, see the "[contributing guide](docs/codeql/CONTRIBUTING.md)" for docs.
-
 ## License
 
 The code in this repository is licensed under the [MIT License](LICENSE) by [GitHub](https://github.com).

change-notes/1.20/analysis-javascript.md

@@ -52,7 +52,7 @@
 | Unneeded defensive code | More true positive and fewer false positive results | This query now recognizes additional defensive code patterns. |
 | Unsafe dynamic method access              | Fewer false positive results | This query no longer flags concatenated strings as unsafe method names. |
 | Unused parameter                           | Fewer false positive results | This query no longer flags parameters with leading underscore. |
-| Unused variable, import, function or class | Fewer false positive results | This query now flags fewer variables that are implicitly used by JSX elements. It no longer flags variables with a leading underscore and variables in dead code. |
+| Unused variable, import, function or class | Fewer false positive results | This query now flags fewer variables that are implictly used by JSX elements. It no longer flags variables with a leading underscore and variables in dead code. |
 | Unvalidated dynamic method call           | More true positive results | This query now flags concatenated strings as unvalidated method names in more cases. |
 | Useless assignment to property. | Fewer false positive results | This query now treats assignments with complex right-hand sides correctly. |
 | Useless conditional | Fewer results | Additional defensive coding patterns are now ignored. |

change-notes/1.23/analysis-cpp.md

@@ -19,7 +19,7 @@ The following changes in version 1.23 affect C/C++ analysis in all applications.
 | Hard-coded Japanese era start date in call (`cpp/japanese-era/constructor-or-method-with-exact-era-date`) | Deprecated | This query has been deprecated.  Use the new combined query Hard-coded Japanese era start date (`cpp/japanese-era/exact-era-date`) instead. |
 | Hard-coded Japanese era start date in struct (`cpp/japanese-era/struct-with-exact-era-date`) | Deprecated | This query has been deprecated.  Use the new combined query Hard-coded Japanese era start date (`cpp/japanese-era/exact-era-date`) instead. |
 | Hard-coded Japanese era start date (`cpp/japanese-era/exact-era-date`) | More correct results | This query now checks for the beginning date of the Reiwa era (1st May 2019). |
-| Non-constant format string (`cpp/non-constant-format`) | Fewer false positive results | Fixed false positive results triggered by mismatching declarations of a formatting function. |
+| Non-constant format string (`cpp/non-constant-format`) | Fewer false positive results | Fixed false positive results triggrered by mismatching declarations of a formatting function. |
 | Sign check of bitwise operation (`cpp/bitwise-sign-check`) | Fewer false positive results | Results involving `>=` or `<=` are no longer reported. |
 | Too few arguments to formatting function (`cpp/wrong-number-format-arguments`) | Fewer false positive results | Fixed false positive results triggered by mismatching declarations of a formatting function. |
 | Too many arguments to formatting function (`cpp/too-many-format-arguments`) | Fewer false positive results | Fixed false positive results triggered by mismatching declarations of a formatting function. |

change-notes/1.24/analysis-javascript.md

@@ -91,7 +91,7 @@
 
 ## Changes to libraries
 
-* The predicates `RegExpTerm.getSuccessor` and `RegExpTerm.getPredecessor` have been changed to reflect textual, not operational, matching order. This only makes a difference in lookbehind assertions, which are operationally matched backwards. Previously, `getSuccessor` would mimic this, so in an assertion `(?<=ab)` the term `b` would be considered the predecessor, not the successor, of `a`. Textually, however, `a` is still matched before `b`, and this is the order we now follow.
+* The predicates `RegExpTerm.getSuccessor` and `RegExpTerm.getPredecessor` have been changed to reflect textual, not operational, matching order. This only makes a difference in lookbehind assertions, which are operationally matched backwards. Previously, `getSuccessor` would mimick this, so in an assertion `(?<=ab)` the term `b` would be considered the predecessor, not the successor, of `a`. Textually, however, `a` is still matched before `b`, and this is the order we now follow.
 * An extensible model of the `EventEmitter` pattern has been implemented.
 * Taint-tracking configurations now interact differently with the `data` flow label, which may affect queries
   that combine taint-tracking and flow labels.

codeql-workspace.yml

@@ -4,7 +4,6 @@ provide:
   - "*/ql/test/qlpack.yml"
   - "*/ql/examples/qlpack.yml"
   - "*/ql/consistency-queries/qlpack.yml"
-  - "shared/*/qlpack.yml"
   - "cpp/ql/test/query-tests/Security/CWE/CWE-190/semmle/tainted/qlpack.yml"
   - "go/ql/config/legacy-support/qlpack.yml"
   - "go/build/codeql-extractor-go/codeql-extractor.yml"
@@ -17,7 +16,6 @@ provide:
   # - "javascript/ql/experimental/adaptivethreatmodeling/model/qlpack.yml"
   - "javascript/ql/experimental/adaptivethreatmodeling/modelbuilding/qlpack.yml"
   - "javascript/ql/experimental/adaptivethreatmodeling/src/qlpack.yml"
-  - "javascript/ql/experimental/adaptivethreatmodeling/test/qlpack.yml"
   - "csharp/ql/campaigns/Solorigate/lib/qlpack.yml"
   - "csharp/ql/campaigns/Solorigate/src/qlpack.yml"
   - "csharp/ql/campaigns/Solorigate/test/qlpack.yml"
@@ -25,8 +23,7 @@ provide:
   - "misc/suite-helpers/qlpack.yml"
   - "ruby/extractor-pack/codeql-extractor.yml"
   - "swift/extractor-pack/codeql-extractor.yml"
-  - "swift/integration-tests/qlpack.yml"
-  - "ql/extractor-pack/codeql-extractor.yml"
+  - "ql/extractor-pack/codeql-extractor.ym"
 
 versionPolicies:
   default:

config/atm/ml-powered-queries-repo/add-note.js

@@ -1,21 +0,0 @@
-const mongoose = require('mongoose');
-
-Logger = require('./logger').Logger;
-Note = require('./models/note').Note;
-
-(async () => {
-  if (process.argv.length != 5) {
-    Logger.log("Creates a private note.  Usage: node add-note.js <token> <title> <body>")
-    return;
-  }
-
-  // Open the default mongoose connection
-  await mongoose.connect('mongodb://localhost:27017/notes', { useFindAndModify: false });
-
-  const [userToken, title, body] = process.argv.slice(2);
-  await Note.create({ title, body, userToken });
-
-  Logger.log(`Created private note with title ${title} and body ${body} belonging to user with token ${userToken}.`);
-
-  await mongoose.connection.close();
-})();

config/atm/ml-powered-queries-repo/app.js

@@ -1,68 +0,0 @@
-const bodyParser = require('body-parser');
-const express = require('express');
-const mongoose = require('mongoose');
-
-const notesApi = require('./notes-api');
-const usersApi = require('./users-api');
-
-const addSampleData = module.exports.addSampleData = async () => {
-  const [userA, userB] = await User.create([
-    {
-      name: "A",
-      token: "tokenA"
-    },
-    {
-      name: "B",
-      token: "tokenB"
-    }
-  ]);
-
-  await Note.create([
-    {
-      title: "Public note belonging to A",
-      body: "This is a public note belonging to A",
-      isPublic: true,
-      ownerToken: userA.token
-    },
-    {
-      title: "Public note belonging to B",
-      body: "This is a public note belonging to B",
-      isPublic: true,
-      ownerToken: userB.token
-    },
-    {
-      title: "Private note belonging to A",
-      body: "This is a private note belonging to A",
-      ownerToken: userA.token
-    },
-    {
-      title: "Private note belonging to B",
-      body: "This is a private note belonging to B",
-      ownerToken: userB.token
-    }
-  ]);
-}
-
-module.exports.startApp = async () => {
-  // Open the default mongoose connection
-  await mongoose.connect('mongodb://mongo:27017/notes', { useFindAndModify: false });
-  // Drop contents of DB
-  mongoose.connection.dropDatabase();
-  // Add some sample data
-  await addSampleData();
-
-  const app = express();
-
-  app.use(bodyParser.json());
-  app.use(bodyParser.urlencoded());
-
-  app.get('/', async (_req, res) => {
-    res.send('Hello World');
-  });
-
-  app.use('/api/notes', notesApi.router);
-  app.use('/api/users', usersApi.router);
-
-  app.listen(3000);
-  Logger.log('Express started on port 3000');
-};

config/atm/ml-powered-queries-repo/index.js

@@ -1,7 +0,0 @@
-const startApp = require('./app').startApp;
-
-Logger = require('./logger').Logger;
-Note = require('./models/note').Note;
-User = require('./models/user').User;
-
-startApp();

config/atm/ml-powered-queries-repo/logger.js

@@ -1,5 +0,0 @@
-module.exports.Logger = class {
-  log(message, ...objs) {
-    console.log(message, objs);
-  }
-};

config/atm/ml-powered-queries-repo/models/note.js

@@ -1,8 +0,0 @@
-const mongoose = require('mongoose');
-
-module.exports.Note = mongoose.model('Note', new mongoose.Schema({
-  title: String,
-  body: String,
-  ownerToken: String,
-  isPublic: Boolean
-}));

config/atm/ml-powered-queries-repo/models/user.js

@@ -1,6 +0,0 @@
-const mongoose = require('mongoose');
-
-module.exports.User = mongoose.model('User', new mongoose.Schema({
-  name: String,
-  token: String
-}));

config/atm/ml-powered-queries-repo/notes-api.js

@@ -1,44 +0,0 @@
-const express = require('express')
-
-const router = module.exports.router = express.Router();
-
-function serializeNote(note) {
-  return {
-    title: note.title,
-    body: note.body
-  };
-}
-
-router.post('/find', async (req, res) => {
-  const notes = await Note.find({
-    ownerToken: req.body.token
-  }).exec();
-  res.json({
-    notes: notes.map(serializeNote)
-  });
-});
-
-router.get('/findPublic', async (_req, res) => {
-  const notes = await Note.find({
-    isPublic: true
-  }).exec();
-  res.json({
-    notes: notes.map(serializeNote)
-  });
-});
-
-router.post('/findVisible', async (req, res) => {
-  const notes = await Note.find({
-    $or: [
-      {
-        isPublic: true
-      },
-      {
-        ownerToken: req.body.token
-      }
-    ]
-  }).exec();
-  res.json({
-    notes: notes.map(serializeNote)
-  });
-});

config/atm/ml-powered-queries-repo/read-notes.js

@@ -1,37 +0,0 @@
-const mongoose = require('mongoose');
-
-Logger = require('./logger').Logger;
-Note = require('./models/note').Note;
-User = require('./models/user').User;
-
-(async () => {
-  if (process.argv.length != 3) {
-    Logger.log("Outputs all notes visible to a user.  Usage: node read-notes.js <token>")
-    return;
-  }
-
-  // Open the default mongoose connection
-  await mongoose.connect('mongodb://localhost:27017/notes', { useFindAndModify: false });
-
-  const ownerToken = process.argv[2];
-
-  const user = await User.findOne({
-    token: ownerToken
-  }).exec();
-
-  const notes = await Note.find({
-    $or: [
-      { isPublic: true },
-      { ownerToken }
-    ]
-  }).exec();
-
-  notes.map(note => {
-    Logger.log("Title:" + note.title);
-    Logger.log("By:" + user.name);
-    Logger.log("Body:" + note.body);
-    Logger.log();
-  });
-
-  await mongoose.connection.close();
-})();

config/atm/ml-powered-queries-repo/users-api.js

@@ -1,25 +0,0 @@
-const express = require('express')
-
-Logger = require('./logger').Logger;
-const router = module.exports.router = express.Router();
-
-router.post('/updateName', async (req, res) => {
-  Logger.log("/updateName called with new name", req.body.name);
-  await User.findOneAndUpdate({
-    token: req.body.token
-  }, {
-    name: req.body.name
-  }).exec();
-  res.json({
-    name: req.body.name
-  });
-});
-
-router.post('/getName', async (req, res) => {
-  const user = await User.findOne({
-    token: req.body.token
-  }).exec();
-  res.json({
-    name: user.name
-  });
-});

config/dbscheme-fragments.json

@@ -1,33 +0,0 @@
-{
-  "files": [
-    "javascript/ql/lib/semmlecode.javascript.dbscheme",
-    "python/ql/lib/semmlecode.python.dbscheme",
-    "ruby/ql/lib/ruby.dbscheme",
-    "ql/ql/src/ql.dbscheme"
-  ],
-  "fragments": [
-    "/*- External data -*/",
-    "/*- Files and folders -*/",
-    "/*- Diagnostic messages -*/",
-    "/*- Diagnostic messages: severity -*/",
-    "/*- Source location prefix -*/",
-    "/*- Lines of code -*/",
-    "/*- Configuration files with key value pairs -*/",
-    "/*- YAML -*/",
-    "/*- XML Files -*/",
-    "/*- XML: sourceline -*/",
-    "/*- DEPRECATED: External defects and metrics -*/",
-    "/*- DEPRECATED: Snapshot date -*/",
-    "/*- DEPRECATED: Duplicate code -*/",
-    "/*- DEPRECATED: Version control data -*/",
-    "/*- JavaScript-specific part -*/",
-    "/*- Ruby dbscheme -*/",
-    "/*- Erb dbscheme -*/",
-    "/*- QL dbscheme -*/",
-    "/*- Dbscheme dbscheme -*/",
-    "/*- Yaml dbscheme -*/",
-    "/*- Blame dbscheme -*/",
-    "/*- JSON dbscheme -*/",
-    "/*- Python dbscheme -*/"
-  ]
-}

config/identical-files.json

@@ -1,79 +1,47 @@
 {
-  "DataFlow Java/C++/C#/Go/Python/Ruby/Swift": [
-    "java/ql/lib/semmle/code/java/dataflow/internal/DataFlow.qll",
-    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlow.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlow.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlow.qll",
-    "go/ql/lib/semmle/go/dataflow/internal/DataFlow.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/DataFlow.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlow.qll",
-    "swift/ql/lib/codeql/swift/dataflow/internal/DataFlow.qll"
-  ],
-  "DataFlowImpl Java/C++/C#/Go/Python/Ruby/Swift": [
+  "DataFlow Java/C++/C#/Python": [
     "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl.qll",
-    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImpl.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImpl.qll",
-    "go/ql/lib/semmle/go/dataflow/internal/DataFlowImpl.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/DataFlowImpl.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlowImpl.qll",
-    "swift/ql/lib/codeql/swift/dataflow/internal/DataFlowImpl.qll"
-  ],
-  "DataFlow Java/C++/C#/Go/Python/Ruby/Swift Legacy Configuration": [
-    "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl1.qll",
     "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl2.qll",
     "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl3.qll",
     "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl4.qll",
     "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl5.qll",
     "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl6.qll",
-    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImpl1.qll",
+    "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImplForSerializability.qll",
+    "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImplForOnActivityResult.qll",
+    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImpl.qll",
     "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImpl2.qll",
     "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImpl3.qll",
     "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImpl4.qll",
     "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImplLocal.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl1.qll",
+    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl.qll",
     "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl2.qll",
     "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl3.qll",
     "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl4.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImpl1.qll",
+    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImpl.qll",
     "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImpl2.qll",
     "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImpl3.qll",
     "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImpl4.qll",
     "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImpl5.qll",
-    "go/ql/lib/semmle/go/dataflow/internal/DataFlowImpl1.qll",
-    "go/ql/lib/semmle/go/dataflow/internal/DataFlowImpl2.qll",
-    "go/ql/lib/semmle/go/dataflow/internal/DataFlowImplForStringsNewReplacer.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/DataFlowImpl1.qll",
+    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImplForContentDataFlow.qll",
+    "python/ql/lib/semmle/python/dataflow/new/internal/DataFlowImpl.qll",
     "python/ql/lib/semmle/python/dataflow/new/internal/DataFlowImpl2.qll",
     "python/ql/lib/semmle/python/dataflow/new/internal/DataFlowImpl3.qll",
     "python/ql/lib/semmle/python/dataflow/new/internal/DataFlowImpl4.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlowImpl1.qll",
+    "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlowImpl.qll",
     "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlowImpl2.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlowImplForHttpClientLibraries.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlowImplForPathname.qll",
-    "swift/ql/lib/codeql/swift/dataflow/internal/DataFlowImpl1.qll"
+    "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlowImplForLibraries.qll",
+    "swift/ql/lib/codeql/swift/dataflow/internal/DataFlowImpl.qll"
   ],
-  "DataFlow Java/C++/C#/Go/Python/Ruby/Swift Common": [
+  "DataFlow Java/C++/C#/Python Common": [
     "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImplCommon.qll",
     "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImplCommon.qll",
     "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlowImplCommon.qll",
     "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImplCommon.qll",
-    "go/ql/lib/semmle/go/dataflow/internal/DataFlowImplCommon.qll",
     "python/ql/lib/semmle/python/dataflow/new/internal/DataFlowImplCommon.qll",
     "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlowImplCommon.qll",
     "swift/ql/lib/codeql/swift/dataflow/internal/DataFlowImplCommon.qll"
   ],
-  "TaintTracking Java/C++/C#/Go/Python/Ruby/Swift": [
-    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/tainttracking1/TaintTracking.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/tainttracking1/TaintTracking.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/tainttracking1/TaintTracking.qll",
-    "go/ql/lib/semmle/go/dataflow/internal/tainttracking1/TaintTracking.qll",
-    "java/ql/lib/semmle/code/java/dataflow/internal/tainttracking1/TaintTracking.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/tainttracking1/TaintTracking.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/tainttracking1/TaintTracking.qll",
-    "swift/ql/lib/codeql/swift/dataflow/internal/tainttracking1/TaintTracking.qll"
-  ],
-  "TaintTracking Legacy Configuration Java/C++/C#/Go/Python/Ruby/Swift": [
+  "TaintTracking::Configuration Java/C++/C#/Python": [
     "cpp/ql/lib/semmle/code/cpp/dataflow/internal/tainttracking1/TaintTrackingImpl.qll",
     "cpp/ql/lib/semmle/code/cpp/dataflow/internal/tainttracking2/TaintTrackingImpl.qll",
     "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/tainttracking1/TaintTrackingImpl.qll",
@@ -84,8 +52,6 @@
     "csharp/ql/lib/semmle/code/csharp/dataflow/internal/tainttracking3/TaintTrackingImpl.qll",
     "csharp/ql/lib/semmle/code/csharp/dataflow/internal/tainttracking4/TaintTrackingImpl.qll",
     "csharp/ql/lib/semmle/code/csharp/dataflow/internal/tainttracking5/TaintTrackingImpl.qll",
-    "go/ql/lib/semmle/go/dataflow/internal/tainttracking1/TaintTrackingImpl.qll",
-    "go/ql/lib/semmle/go/dataflow/internal/tainttracking2/TaintTrackingImpl.qll",
     "java/ql/lib/semmle/code/java/dataflow/internal/tainttracking1/TaintTrackingImpl.qll",
     "java/ql/lib/semmle/code/java/dataflow/internal/tainttracking2/TaintTrackingImpl.qll",
     "java/ql/lib/semmle/code/java/dataflow/internal/tainttracking3/TaintTrackingImpl.qll",
@@ -94,9 +60,10 @@
     "python/ql/lib/semmle/python/dataflow/new/internal/tainttracking3/TaintTrackingImpl.qll",
     "python/ql/lib/semmle/python/dataflow/new/internal/tainttracking4/TaintTrackingImpl.qll",
     "ruby/ql/lib/codeql/ruby/dataflow/internal/tainttracking1/TaintTrackingImpl.qll",
+    "ruby/ql/lib/codeql/ruby/dataflow/internal/tainttrackingforlibraries/TaintTrackingImpl.qll",
     "swift/ql/lib/codeql/swift/dataflow/internal/tainttracking1/TaintTrackingImpl.qll"
   ],
-  "DataFlow Java/C++/C#/Python/Ruby/Swift Consistency checks": [
+  "DataFlow Java/C++/C#/Python Consistency checks": [
     "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImplConsistency.qll",
     "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImplConsistency.qll",
     "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlowImplConsistency.qll",
@@ -105,12 +72,10 @@
     "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlowImplConsistency.qll",
     "swift/ql/lib/codeql/swift/dataflow/internal/DataFlowImplConsistency.qll"
   ],
-  "DataFlow Java/C#/Go/Ruby/Python/Swift Flow Summaries": [
+  "DataFlow Java/C# Flow Summaries": [
     "java/ql/lib/semmle/code/java/dataflow/internal/FlowSummaryImpl.qll",
     "csharp/ql/lib/semmle/code/csharp/dataflow/internal/FlowSummaryImpl.qll",
-    "go/ql/lib/semmle/go/dataflow/internal/FlowSummaryImpl.qll",
     "ruby/ql/lib/codeql/ruby/dataflow/internal/FlowSummaryImpl.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/FlowSummaryImpl.qll",
     "swift/ql/lib/codeql/swift/dataflow/internal/FlowSummaryImpl.qll"
   ],
   "SsaReadPosition Java/C#": [
@@ -118,12 +83,8 @@
     "csharp/ql/lib/semmle/code/csharp/dataflow/internal/rangeanalysis/SsaReadPositionCommon.qll"
   ],
   "Model as Data Generation Java/C# - CaptureModels": [
-    "java/ql/src/utils/modelgenerator/internal/CaptureModels.qll",
-    "csharp/ql/src/utils/modelgenerator/internal/CaptureModels.qll"
-  ],
-  "Model as Data Generation Java/C# - CaptureModelsPrinting": [
-    "java/ql/src/utils/modelgenerator/internal/CaptureModelsPrinting.qll",
-    "csharp/ql/src/utils/modelgenerator/internal/CaptureModelsPrinting.qll"
+    "java/ql/src/utils/model-generator/internal/CaptureModels.qll",
+    "csharp/ql/src/utils/model-generator/internal/CaptureModels.qll"
   ],
   "Sign Java/C#": [
     "java/ql/lib/semmle/code/java/dataflow/internal/rangeanalysis/Sign.qll",
@@ -281,11 +242,6 @@
     "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/IRBlockImports.qll",
     "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/IRBlockImports.qll"
   ],
-  "C++ IR IRConsistencyImports": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/internal/IRConsistencyImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/IRConsistencyImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/IRConsistencyImports.qll"
-  ],
   "C++ IR IRFunctionImports": [
     "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/internal/IRFunctionImports.qll",
     "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/IRFunctionImports.qll",
@@ -429,6 +385,15 @@
     "csharp/ql/lib/semmle/code/csharp/dataflow/internal/ControlFlowReachability.qll",
     "csharp/ql/lib/semmle/code/csharp/dataflow/internal/rangeanalysis/ControlFlowReachability.qll"
   ],
+  "Inline Test Expectations": [
+    "cpp/ql/test/TestUtilities/InlineExpectationsTest.qll",
+    "csharp/ql/test/TestUtilities/InlineExpectationsTest.qll",
+    "java/ql/test/TestUtilities/InlineExpectationsTest.qll",
+    "python/ql/test/TestUtilities/InlineExpectationsTest.qll",
+    "ruby/ql/test/TestUtilities/InlineExpectationsTest.qll",
+    "ql/ql/test/TestUtilities/InlineExpectationsTest.qll",
+    "go/ql/test/TestUtilities/InlineExpectationsTest.qll"
+  ],
   "C++ ExternalAPIs": [
     "cpp/ql/src/Security/CWE/CWE-020/ExternalAPIs.qll",
     "cpp/ql/src/Security/CWE/CWE-020/ir/ExternalAPIs.qll"
@@ -487,10 +452,6 @@
     "javascript/ql/src/Comments/CommentedOutCodeReferences.inc.qhelp",
     "python/ql/src/Lexical/CommentedOutCodeReferences.inc.qhelp"
   ],
-  "ThreadResourceAbuse qhelp": [
-    "java/ql/src/experimental/Security/CWE/CWE-400/LocalThreadResourceAbuse.qhelp",
-    "java/ql/src/experimental/Security/CWE/CWE-400/ThreadResourceAbuse.qhelp"
-  ],
   "IDE Contextual Queries": [
     "cpp/ql/lib/IDEContextual.qll",
     "csharp/ql/lib/IDEContextual.qll",
@@ -498,6 +459,15 @@
     "javascript/ql/lib/IDEContextual.qll",
     "python/ql/lib/analysis/IDEContextual.qll"
   ],
+  "SSA C#": [
+    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/SsaImplCommon.qll",
+    "csharp/ql/lib/semmle/code/csharp/controlflow/internal/pressa/SsaImplCommon.qll",
+    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/basessa/SsaImplCommon.qll",
+    "csharp/ql/lib/semmle/code/cil/internal/SsaImplCommon.qll",
+    "ruby/ql/lib/codeql/ruby/dataflow/internal/SsaImplCommon.qll",
+    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/SsaImplCommon.qll",
+    "swift/ql/lib/codeql/swift/dataflow/internal/SsaImplCommon.qll"
+  ],
   "CryptoAlgorithms Python/JS/Ruby": [
     "javascript/ql/lib/semmle/javascript/security/CryptoAlgorithms.qll",
     "python/ql/lib/semmle/python/concepts/CryptoAlgorithms.qll",
@@ -511,8 +481,30 @@
   "SensitiveDataHeuristics Python/JS": [
     "javascript/ql/lib/semmle/javascript/security/internal/SensitiveDataHeuristics.qll",
     "python/ql/lib/semmle/python/security/internal/SensitiveDataHeuristics.qll",
-    "ruby/ql/lib/codeql/ruby/security/internal/SensitiveDataHeuristics.qll",
-    "swift/ql/lib/codeql/swift/security/internal/SensitiveDataHeuristics.qll"
+    "ruby/ql/lib/codeql/ruby/security/internal/SensitiveDataHeuristics.qll"
+  ],
+  "ReDoS Util Python/JS/Ruby/Java": [
+    "javascript/ql/lib/semmle/javascript/security/performance/ReDoSUtil.qll",
+    "python/ql/lib/semmle/python/security/performance/ReDoSUtil.qll",
+    "ruby/ql/lib/codeql/ruby/security/performance/ReDoSUtil.qll",
+    "java/ql/lib/semmle/code/java/security/performance/ReDoSUtil.qll"
+  ],
+  "ReDoS Exponential Python/JS/Ruby/Java": [
+    "javascript/ql/lib/semmle/javascript/security/performance/ExponentialBackTracking.qll",
+    "python/ql/lib/semmle/python/security/performance/ExponentialBackTracking.qll",
+    "ruby/ql/lib/codeql/ruby/security/performance/ExponentialBackTracking.qll",
+    "java/ql/lib/semmle/code/java/security/performance/ExponentialBackTracking.qll"
+  ],
+  "ReDoS Polynomial Python/JS/Ruby/Java": [
+    "javascript/ql/lib/semmle/javascript/security/performance/SuperlinearBackTracking.qll",
+    "python/ql/lib/semmle/python/security/performance/SuperlinearBackTracking.qll",
+    "ruby/ql/lib/codeql/ruby/security/performance/SuperlinearBackTracking.qll",
+    "java/ql/lib/semmle/code/java/security/performance/SuperlinearBackTracking.qll"
+  ],
+  "BadTagFilterQuery Python/JS/Ruby": [
+    "javascript/ql/lib/semmle/javascript/security/BadTagFilterQuery.qll",
+    "python/ql/lib/semmle/python/security/BadTagFilterQuery.qll",
+    "ruby/ql/lib/codeql/ruby/security/BadTagFilterQuery.qll"
   ],
   "CFG": [
     "csharp/ql/lib/semmle/code/csharp/controlflow/internal/ControlFlowGraphImplShared.qll",
@@ -523,17 +515,20 @@
     "python/ql/lib/semmle/python/dataflow/new/internal/TypeTracker.qll",
     "ruby/ql/lib/codeql/ruby/typetracking/TypeTracker.qll"
   ],
-  "SummaryTypeTracker": [
-    "python/ql/lib/semmle/python/dataflow/new/internal/SummaryTypeTracker.qll",
-    "ruby/ql/lib/codeql/ruby/typetracking/internal/SummaryTypeTracker.qll"
+  "CodeQL Tutorial": [
+    "cpp/ql/lib/tutorial.qll",
+    "csharp/ql/lib/tutorial.qll",
+    "java/ql/lib/tutorial.qll",
+    "javascript/ql/lib/tutorial.qll",
+    "python/ql/lib/tutorial.qll",
+    "ruby/ql/lib/tutorial.qll"
   ],
   "AccessPathSyntax": [
     "csharp/ql/lib/semmle/code/csharp/dataflow/internal/AccessPathSyntax.qll",
-    "go/ql/lib/semmle/go/dataflow/internal/AccessPathSyntax.qll",
     "java/ql/lib/semmle/code/java/dataflow/internal/AccessPathSyntax.qll",
     "javascript/ql/lib/semmle/javascript/frameworks/data/internal/AccessPathSyntax.qll",
     "ruby/ql/lib/codeql/ruby/dataflow/internal/AccessPathSyntax.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/AccessPathSyntax.qll",
+    "python/ql/lib/semmle/python/frameworks/data/internal/AccessPathSyntax.qll",
     "swift/ql/lib/codeql/swift/dataflow/internal/AccessPathSyntax.qll"
   ],
   "IncompleteUrlSubstringSanitization": [
@@ -545,16 +540,16 @@
     "ruby/ql/lib/codeql/ruby/internal/ConceptsShared.qll",
     "javascript/ql/lib/semmle/javascript/internal/ConceptsShared.qll"
   ],
+  "Hostname Regexp queries": [
+    "javascript/ql/src/Security/CWE-020/HostnameRegexpShared.qll",
+    "python/ql/src/Security/CWE-020/HostnameRegexpShared.qll",
+    "ruby/ql/src/queries/security/cwe-020/HostnameRegexpShared.qll"
+  ],
   "ApiGraphModels": [
     "javascript/ql/lib/semmle/javascript/frameworks/data/internal/ApiGraphModels.qll",
     "ruby/ql/lib/codeql/ruby/frameworks/data/internal/ApiGraphModels.qll",
     "python/ql/lib/semmle/python/frameworks/data/internal/ApiGraphModels.qll"
   ],
-  "ApiGraphModelsExtensions": [
-    "javascript/ql/lib/semmle/javascript/frameworks/data/internal/ApiGraphModelsExtensions.qll",
-    "ruby/ql/lib/codeql/ruby/frameworks/data/internal/ApiGraphModelsExtensions.qll",
-    "python/ql/lib/semmle/python/frameworks/data/internal/ApiGraphModelsExtensions.qll"
-  ],
   "TaintedFormatStringQuery Ruby/JS": [
     "javascript/ql/lib/semmle/javascript/security/dataflow/TaintedFormatStringQuery.qll",
     "ruby/ql/lib/codeql/ruby/security/TaintedFormatStringQuery.qll"
@@ -577,30 +572,18 @@
   ],
   "Swift declarations test file": [
     "swift/ql/test/extractor-tests/declarations/declarations.swift",
-    "swift/ql/test/library-tests/ast/declarations.swift"
+    "swift/ql/test/library-tests/parent/declarations.swift"
   ],
   "Swift statements test file": [
     "swift/ql/test/extractor-tests/statements/statements.swift",
-    "swift/ql/test/library-tests/ast/statements.swift"
+    "swift/ql/test/library-tests/parent/statements.swift"
   ],
   "Swift expressions test file": [
     "swift/ql/test/extractor-tests/expressions/expressions.swift",
-    "swift/ql/test/library-tests/ast/expressions.swift"
+    "swift/ql/test/library-tests/parent/expressions.swift"
   ],
   "Swift patterns test file": [
     "swift/ql/test/extractor-tests/patterns/patterns.swift",
-    "swift/ql/test/library-tests/ast/patterns.swift"
-  ],
-  "Swift control flow test file": [
-    "swift/ql/test/library-tests/controlflow/graph/cfg.swift",
-    "swift/ql/test/library-tests/ast/cfg.swift"
-  ],
-  "IncompleteMultiCharacterSanitization JS/Ruby": [
-    "javascript/ql/lib/semmle/javascript/security/IncompleteMultiCharacterSanitizationQuery.qll",
-    "ruby/ql/lib/codeql/ruby/security/IncompleteMultiCharacterSanitizationQuery.qll"
-  ],
-  "EncryptionKeySizes Python/Java": [
-    "python/ql/lib/semmle/python/security/internal/EncryptionKeySizes.qll",
-    "java/ql/lib/semmle/code/java/security/internal/EncryptionKeySizes.qll"
+    "swift/ql/test/library-tests/parent/patterns.swift"
   ]
 }

config/sync-dbscheme-fragments.py

@@ -1,86 +0,0 @@
-#!/usr/bin/env python3
-
-import argparse
-import json
-import os
-import pathlib
-import re
-
-
-def make_groups(blocks):
-    groups = {}
-    for block in blocks:
-        groups.setdefault("".join(block["lines"]), []).append(block)
-    return list(groups.values())
-
-
-def validate_fragments(fragments):
-    ok = True
-    for header, blocks in fragments.items():
-        groups = make_groups(blocks)
-        if len(groups) > 1:
-            ok = False
-            print("Warning: dbscheme fragments with header '{}' are different for {}".format(header, ["{}:{}:{}".format(
-                group[0]["file"], group[0]["start"], group[0]["end"]) for group in groups]))
-    return ok
-
-
-def main():
-    script_path = os.path.realpath(__file__)
-    script_dir = os.path.dirname(script_path)
-    parser = argparse.ArgumentParser(
-        prog=os.path.basename(script_path),
-        description='Sync dbscheme fragments across files.'
-    )
-    parser.add_argument('files', metavar='dbscheme_file', type=pathlib.Path, nargs='*', default=[],
-                        help='dbscheme files to check')
-    args = parser.parse_args()
-
-    with open(os.path.join(script_dir, "dbscheme-fragments.json"), "r") as f:
-        config = json.load(f)
-
-    fragment_headers = set(config["fragments"])
-    fragments = {}
-    ok = True
-    for file in args.files + config["files"]:
-        with open(os.path.join(os.path.dirname(script_dir), file), "r") as dbscheme:
-            header = None
-            line_number = 1
-            block = {"file": file, "start": line_number,
-                     "end": None, "lines": []}
-
-            def end_block():
-                block["end"] = line_number - 1
-                if len(block["lines"]) > 0:
-                    if header is None:
-                        if re.match(r'(?m)\A(\s|//.*$|/\*(\**[^\*])*\*+/)*\Z', "".join(block["lines"])):
-                            # Ignore comments at the beginning of the file
-                            pass
-                        else:
-                            ok = False
-                            print("Warning: dbscheme fragment without header: {}:{}:{}".format(
-                                block["file"], block["start"], block["end"]))
-                    else:
-                        fragments.setdefault(header, []).append(block)
-            for line in dbscheme:
-                m = re.match(r"^\/\*-.*-\*\/$", line)
-                if m:
-                    end_block()
-                    header = line.strip()
-                    if header not in fragment_headers:
-                        ok = False
-                        print("Warning: unknown header for dbscheme fragment: '{}': {}:{}".format(
-                            header, file, line_number))
-                    block = {"file": file, "start": line_number,
-                             "end": None, "lines": []}
-                block["lines"].append(line)
-                line_number += 1
-            block["lines"].append('\n')
-            line_number += 1
-            end_block()
-    if not ok or not validate_fragments(fragments):
-        exit(1)
-
-
-if __name__ == "__main__":
-    main()

cpp/autobuilder/Semmle.Autobuild.Cpp.Tests/BuildScripts.cs

@@ -1,6 +1,5 @@
 using Xunit;
 using Semmle.Autobuild.Shared;
-using Semmle.Util;
 using System.Collections.Generic;
 using System;
 using System.Linq;
@@ -76,15 +75,6 @@ namespace Semmle.Autobuild.Cpp.Tests
             throw new ArgumentException("Missing RunProcess " + pattern);
         }
 
-        int IBuildActions.RunProcess(string cmd, string args, string? workingDirectory, IDictionary<string, string>? env, BuildOutputHandler onOutput, BuildOutputHandler onError)
-        {
-            var ret = (this as IBuildActions).RunProcess(cmd, args, workingDirectory, env, out var stdout);
-
-            stdout.ForEach(line => onOutput(line));
-
-            return ret;
-        }
-
         public IList<string> DirectoryDeleteIn = new List<string>();
 
         void IBuildActions.DirectoryDelete(string dir, bool recursive)
@@ -141,14 +131,6 @@ namespace Semmle.Autobuild.Cpp.Tests
 
         bool IBuildActions.IsWindows() => IsWindows;
 
-        public bool IsMacOs { get; set; }
-
-        bool IBuildActions.IsMacOs() => IsMacOs;
-
-        public bool IsArm { get; set; }
-
-        bool IBuildActions.IsArm() => IsArm;
-
         string IBuildActions.PathCombine(params string[] parts)
         {
             return string.Join(IsWindows ? '\\' : '/', parts.Where(p => !string.IsNullOrWhiteSpace(p)));
@@ -194,15 +176,6 @@ namespace Semmle.Autobuild.Cpp.Tests
             if (!DownloadFiles.Contains((address, fileName)))
                 throw new ArgumentException($"Missing DownloadFile, {address}, {fileName}");
         }
-
-        public IDiagnosticsWriter CreateDiagnosticsWriter(string filename) => new TestDiagnosticWriter();
-    }
-
-    internal class TestDiagnosticWriter : IDiagnosticsWriter
-    {
-        public IList<DiagnosticMessage> Diagnostics { get; } = new List<DiagnosticMessage>();
-
-        public void AddEntry(DiagnosticMessage message) => this.Diagnostics.Add(message);
     }
 
     /// <summary>
@@ -262,7 +235,6 @@ namespace Semmle.Autobuild.Cpp.Tests
             Actions.GetEnvironmentVariable[$"CODEQL_EXTRACTOR_{codeqlUpperLanguage}_TRAP_DIR"] = "";
             Actions.GetEnvironmentVariable[$"CODEQL_EXTRACTOR_{codeqlUpperLanguage}_SOURCE_ARCHIVE_DIR"] = "";
             Actions.GetEnvironmentVariable[$"CODEQL_EXTRACTOR_{codeqlUpperLanguage}_ROOT"] = $@"C:\codeql\{codeqlUpperLanguage.ToLowerInvariant()}";
-            Actions.GetEnvironmentVariable[$"CODEQL_EXTRACTOR_{codeqlUpperLanguage}_DIAGNOSTIC_DIR"] = "";
             Actions.GetEnvironmentVariable["CODEQL_JAVA_HOME"] = @"C:\codeql\tools\java";
             Actions.GetEnvironmentVariable["CODEQL_PLATFORM"] = "win64";
             Actions.GetEnvironmentVariable["SEMMLE_DIST"] = @"C:\odasa";
@@ -285,11 +257,11 @@ namespace Semmle.Autobuild.Cpp.Tests
             Actions.GetCurrentDirectory = cwd;
             Actions.IsWindows = isWindows;
 
-            var options = new CppAutobuildOptions(Actions);
+            var options = new AutobuildOptions(Actions, Language.Cpp);
             return new CppAutobuilder(Actions, options);
         }
 
-        void TestAutobuilderScript(CppAutobuilder autobuilder, int expectedOutput, int commandsRun)
+        void TestAutobuilderScript(Autobuilder autobuilder, int expectedOutput, int commandsRun)
         {
             Assert.Equal(expectedOutput, autobuilder.GetBuildScript().Run(Actions, StartCallback, EndCallback));
 
@@ -327,7 +299,7 @@ namespace Semmle.Autobuild.Cpp.Tests
         {
             Actions.RunProcess[@"cmd.exe /C nuget restore C:\Project\test.sln -DisableParallelProcessing"] = 1;
             Actions.RunProcess[@"cmd.exe /C C:\Project\.nuget\nuget.exe restore C:\Project\test.sln -DisableParallelProcessing"] = 0;
-            Actions.RunProcess[@"cmd.exe /C CALL ^""C:\Program Files ^(x86^)\Microsoft Visual Studio 14.0\VC\vcvarsall.bat^"" && set Platform=&& type NUL && msbuild C:\Project\test.sln /t:rebuild /p:Platform=""x86"" /p:Configuration=""Release"""] = 0;
+            Actions.RunProcess[@"cmd.exe /C CALL ^""C:\Program Files ^(x86^)\Microsoft Visual Studio 14.0\VC\vcvarsall.bat^"" && set Platform=&& type NUL && C:\odasa\tools\odasa index --auto msbuild C:\Project\test.sln /p:UseSharedCompilation=false /t:rebuild /p:Platform=""x86"" /p:Configuration=""Release"" /p:MvcBuildViews=true"] = 0;
             Actions.RunProcessOut[@"C:\Program Files (x86)\Microsoft Visual Studio\Installer\vswhere.exe -prerelease -legacy -property installationPath"] = "";
             Actions.RunProcess[@"C:\Program Files (x86)\Microsoft Visual Studio\Installer\vswhere.exe -prerelease -legacy -property installationPath"] = 1;
             Actions.RunProcess[@"C:\Program Files (x86)\Microsoft Visual Studio\Installer\vswhere.exe -prerelease -legacy -property installationVersion"] = 0;

cpp/autobuilder/Semmle.Autobuild.Cpp.Tests/Semmle.Autobuild.Cpp.Tests.csproj

@@ -2,7 +2,7 @@
 
   <PropertyGroup>
     <OutputType>Exe</OutputType>
-    <TargetFramework>net7.0</TargetFramework>
+    <TargetFramework>net6.0</TargetFramework>
     <GenerateAssemblyInfo>false</GenerateAssemblyInfo>
     <RuntimeIdentifiers>win-x64;linux-x64;osx-x64</RuntimeIdentifiers>
     <Nullable>enable</Nullable>
@@ -11,12 +11,11 @@
   <ItemGroup>
     <PackageReference Include="System.IO.FileSystem" Version="4.3.0" />
     <PackageReference Include="System.IO.FileSystem.Primitives" Version="4.3.0" />
-    <PackageReference Include="xunit" Version="2.4.2" />
-    <PackageReference Include="xunit.runner.visualstudio" Version="2.4.5">
+    <PackageReference Include="xunit" Version="2.4.1" />
+    <PackageReference Include="xunit.runner.visualstudio" Version="2.4.1">
       <PrivateAssets>all</PrivateAssets>
       <IncludeAssets>runtime; build; native; contentfiles; analyzers</IncludeAssets>
     </PackageReference>
-    <PackageReference Include="Microsoft.NET.Test.Sdk" Version="17.4.0" />
   </ItemGroup>
 
   <ItemGroup>

cpp/autobuilder/Semmle.Autobuild.Cpp/CppAutobuilder.cs

@@ -1,28 +1,10 @@
 using Semmle.Autobuild.Shared;
-using Semmle.Util;
 
 namespace Semmle.Autobuild.Cpp
 {
-    /// <summary>
-    /// Encapsulates C++ build options.
-    /// </summary>
-    public class CppAutobuildOptions : AutobuildOptionsShared
+    public class CppAutobuilder : Autobuilder
     {
-        public override Language Language => Language.Cpp;
-
-
-        /// <summary>
-        /// Reads options from environment variables.
-        /// Throws ArgumentOutOfRangeException for invalid arguments.
-        /// </summary>
-        public CppAutobuildOptions(IBuildActions actions) : base(actions)
-        {
-        }
-    }
-
-    public class CppAutobuilder : Autobuilder<CppAutobuildOptions>
-    {
-        public CppAutobuilder(IBuildActions actions, CppAutobuildOptions options) : base(actions, options, new DiagnosticClassifier()) { }
+        public CppAutobuilder(IBuildActions actions, AutobuildOptions options) : base(actions, options) { }
 
         public override BuildScript GetBuildScript()
         {

cpp/autobuilder/Semmle.Autobuild.Cpp/Program.cs

@@ -11,14 +11,14 @@ namespace Semmle.Autobuild.Cpp
             try
             {
                 var actions = SystemBuildActions.Instance;
-                var options = new CppAutobuildOptions(actions);
+                var options = new AutobuildOptions(actions, Language.Cpp);
                 try
                 {
                     Console.WriteLine("CodeQL C++ autobuilder");
                     var builder = new CppAutobuilder(actions, options);
                     return builder.AttemptBuild();
                 }
-                catch (InvalidEnvironmentException ex)
+                catch(InvalidEnvironmentException ex)
                 {
                     Console.WriteLine("The environment is invalid: {0}", ex.Message);
                 }

cpp/autobuilder/Semmle.Autobuild.Cpp/Semmle.Autobuild.Cpp.csproj

@@ -1,7 +1,7 @@
 <Project Sdk="Microsoft.NET.Sdk">
 
   <PropertyGroup>
-    <TargetFramework>net7.0</TargetFramework>
+    <TargetFramework>net6.0</TargetFramework>
     <AssemblyName>Semmle.Autobuild.Cpp</AssemblyName>
     <RootNamespace>Semmle.Autobuild.Cpp</RootNamespace>
     <ApplicationIcon />
@@ -17,7 +17,7 @@
   </ItemGroup>
 
   <ItemGroup>
-    <PackageReference Include="Microsoft.Build" Version="17.3.2" />
+    <PackageReference Include="Microsoft.Build" Version="16.11.0" />
   </ItemGroup>
 
   <ItemGroup>

cpp/downgrades/19887dbd33327fb07d54251786e0cb2578539775/upgrade.properties

@@ -1,4 +0,0 @@
-description: Revert support for repeated initializers, which are allowed in C with designated initializers.
-compatibility: full
-aggregate_field_init.rel: reorder aggregate_field_init.rel (int aggregate, int initializer, int field, int position) aggregate initializer field
-aggregate_array_init.rel: reorder aggregate_array_init.rel (int aggregate, int initializer, int element_index, int position) aggregate initializer element_index

cpp/downgrades/23f7cbb88a4eb29f30c3490363dc201bc054c5ff/exprs.ql

@@ -1,17 +0,0 @@
-class Expr extends @expr {
-  string toString() { none() }
-}
-
-class Location extends @location_expr {
-  string toString() { none() }
-}
-
-predicate isExprWithNewBuiltin(Expr expr) {
-  exists(int kind | exprs(expr, kind, _) | 330 <= kind and kind <= 334)
-}
-
-from Expr expr, int kind, int kind_new, Location location
-where
-  exprs(expr, kind, location) and
-  if isExprWithNewBuiltin(expr) then kind_new = 1 else kind_new = kind
-select expr, kind_new, location

cpp/downgrades/23f7cbb88a4eb29f30c3490363dc201bc054c5ff/upgrade.properties

@@ -1,3 +0,0 @@
-description: Add new builtin operations
-compatibility: partial
-exprs.rel: run exprs.qlo

cpp/downgrades/34549c3b0937002f11037d01822ebe99442c1402/attribute_args.ql

@@ -1,17 +0,0 @@
-class AttributeArgument extends @attribute_arg {
-  string toString() { none() }
-}
-
-class Attribute extends @attribute {
-  string toString() { none() }
-}
-
-class LocationDefault extends @location_default {
-  string toString() { none() }
-}
-
-from AttributeArgument arg, int kind, Attribute attr, int index, LocationDefault location
-where
-  attribute_args(arg, kind, attr, index, location) and
-  not arg instanceof @attribute_arg_constant_expr
-select arg, kind, attr, index, location

cpp/downgrades/34549c3b0937002f11037d01822ebe99442c1402/upgrade.properties

@@ -1,4 +0,0 @@
-description: Support all constant attribute arguments
-compatibility: backwards
-attribute_arg_constant.rel: delete
-attribute_args.rel: run attribute_args.qlo

cpp/downgrades/625f706f2a44ae8dc3fc168bfe2637e65c30b012/exprs.ql

@@ -1,17 +0,0 @@
-class Expr extends @expr {
-  string toString() { none() }
-}
-
-class Location extends @location_expr {
-  string toString() { none() }
-}
-
-predicate isExprWithNewBuiltin(Expr expr) {
-  exists(int kind | exprs(expr, kind, _) | 336 <= kind and kind <= 362)
-}
-
-from Expr expr, int kind, int kind_new, Location location
-where
-  exprs(expr, kind, location) and
-  if isExprWithNewBuiltin(expr) then kind_new = 1 else kind_new = kind
-select expr, kind_new, location

cpp/downgrades/625f706f2a44ae8dc3fc168bfe2637e65c30b012/upgrade.properties

@@ -1,3 +0,0 @@
-description: Add new builtin operations
-compatibility: partial
-exprs.rel: run exprs.qlo

cpp/downgrades/73af5058c6899dcdb05754c27ca966aeb3a68c94/exprs.ql

@@ -1,13 +0,0 @@
-class Expr extends @expr {
-  string toString() { none() }
-}
-
-class Location extends @location_expr {
-  string toString() { none() }
-}
-
-from Expr expr, int kind, int kind_new, Location location
-where
-  exprs(expr, kind, location) and
-  if expr instanceof @blockassignexpr then kind_new = 1 else kind_new = kind
-select expr, kind_new, location

cpp/downgrades/73af5058c6899dcdb05754c27ca966aeb3a68c94/upgrade.properties

@@ -1,3 +0,0 @@
-description: Support block assignment
-compatibility: partial
-exprs.rel: run exprs.qlo

cpp/downgrades/a5bb28ed29f73855d64cc5f939cef977fa8fd19a/builtintypes.ql

@@ -1,11 +0,0 @@
-class BuiltinType extends @builtintype {
-  string toString() { none() }
-}
-
-from BuiltinType type, string name, int kind, int kind_new, int size, int sign, int alignment
-where
-  builtintypes(type, name, kind, size, sign, alignment) and
-  if type instanceof @float16 or type instanceof @complex_float16
-  then kind_new = 2
-  else kind_new = kind
-select type, name, kind_new, size, sign, alignment

cpp/downgrades/a5bb28ed29f73855d64cc5f939cef977fa8fd19a/upgrade.properties

@@ -1,3 +0,0 @@
-description: Introduce (_Complex) _Float16 type
-compatibility: backwards
-builtintypes.rel: run builtintypes.qlo

cpp/downgrades/ba86bebea4c7a8235c2fa0e220391fbd4446a087/upgrade.properties

@@ -1,2 +0,0 @@
-description: Uncomment case splits in dbscheme
-compatibility: full