Add change note for Spring StringUtils

.bazelrc

@@ -1,3 +0,0 @@
-build --repo_env=CC=clang --repo_env=CXX=clang++ --copt="-std=c++17"
-
-try-import %workspace%/local.bazelrc

.bazelversion

@@ -1 +0,0 @@
-5.0.0

.codeqlmanifest.json

@@ -0,0 +1,6 @@
+{ "provide": [ "*/ql/src/qlpack.yml",
+               "*/ql/test/qlpack.yml",
+               "*/ql/examples/qlpack.yml",
+               "*/upgrades/qlpack.yml",
+               "misc/legacy-support/*/qlpack.yml",
+               "misc/suite-helpers/qlpack.yml" ] }

.devcontainer/devcontainer.json

@@ -1,16 +1,9 @@
 {
   "extensions": [
-    "rust-lang.rust",
-    "bungcip.better-toml",
     "github.vscode-codeql",
-    "hbenl.vscode-test-explorer",
-    "ms-vscode.test-adapter-converter",
     "slevesque.vscode-zipexplorer"
   ],
   "settings": {
-    "files.watcherExclude": {
-      "**/target/**": true
-    },
     "codeQL.runningQueries.memory": 2048
   }
 }

.devcontainer/swift/Dockerfile

@@ -1,9 +0,0 @@
-# See here for image contents: https://github.com/microsoft/vscode-dev-containers/tree/v0.236.0/containers/cpp/.devcontainer/base.Dockerfile
-
-# [Choice] Debian / Ubuntu version (use Debian 11, Ubuntu 18.04/22.04 on local arm64/Apple Silicon): debian-11, debian-10, ubuntu-22.04, ubuntu-20.04, ubuntu-18.04
-FROM mcr.microsoft.com/vscode/devcontainers/cpp:0-ubuntu-22.04
-
-USER root
-ADD root.sh /tmp/root.sh
-ADD update-codeql.sh /usr/local/bin/update-codeql
-RUN bash /tmp/root.sh && rm /tmp/root.sh

.devcontainer/swift/devcontainer.json

@@ -1,25 +0,0 @@
-{
-	"extensions": [
-		"github.vscode-codeql",
-		"hbenl.vscode-test-explorer",
-		"ms-vscode.test-adapter-converter",
-		"slevesque.vscode-zipexplorer",
-		"ms-vscode.cpptools"
-	],
-	"settings": {
-		"files.watcherExclude": {
-			"**/target/**": true
-		},
-		"codeQL.runningQueries.memory": 2048
-	},
-	"build": {
-		"dockerfile": "Dockerfile",
-	},
-	"runArgs": [
-		"--cap-add=SYS_PTRACE",
-		"--security-opt",
-		"seccomp=unconfined"
-	],
-	"remoteUser": "vscode",
-	"onCreateCommand": ".devcontainer/swift/user.sh"
-}

.devcontainer/swift/root.sh

@@ -1,22 +0,0 @@
-set -xe
-
-BAZELISK_VERSION=v1.12.0
-BAZELISK_DOWNLOAD_SHA=6b0bcb2ea15bca16fffabe6fda75803440375354c085480fe361d2cbf32501db
-
-apt-get update
-export DEBIAN_FRONTEND=noninteractive
-apt-get -y install --no-install-recommends \
-    zlib1g-dev \
-    uuid-dev \
-    python3-distutils \
-    python3-pip \
-    bash-completion
-
-# Install Bazel
-curl -fSsL -o /usr/local/bin/bazelisk https://github.com/bazelbuild/bazelisk/releases/download/${BAZELISK_VERSION}/bazelisk-linux-amd64
-echo "${BAZELISK_DOWNLOAD_SHA} */usr/local/bin/bazelisk" | sha256sum --check -
-chmod 0755 /usr/local/bin/bazelisk
-ln -s bazelisk /usr/local/bin/bazel
-
-# install latest codeql
-update-codeql

.devcontainer/swift/update-codeql.sh

@@ -1,20 +0,0 @@
-#!/bin/bash -e
-
-URL=https://github.com/github/codeql-cli-binaries/releases
-LATEST_VERSION=$(curl -L -s -H 'Accept: application/json' $URL/latest | sed -e 's/.*"tag_name":"\([^"]*\)".*/\1/')
-CURRENT_VERSION=v$(codeql version 2>/dev/null | sed -ne 's/.*release \([0-9.]*\)\./\1/p')
-if [[ $CURRENT_VERSION != $LATEST_VERSION ]]; then
-  if [[ $UID != 0 ]]; then
-    echo "update required, please run this script with sudo:"
-    echo "  sudo $0"
-    exit 1
-  fi
-  ZIP=$(mktemp codeql.XXXX.zip)
-  curl -fSqL -o $ZIP $URL/download/$LATEST_VERSION/codeql-linux64.zip
-  unzip -q $ZIP -d /opt
-  rm $ZIP
-  ln -sf /opt/codeql/codeql /usr/local/bin/codeql
-  echo installed version $LATEST_VERSION
-else
-  echo current version $CURRENT_VERSION is up-to-date
-fi

.devcontainer/swift/user.sh

@@ -1,13 +0,0 @@
-set -xe
-
-# add the workspace to the codeql search path
-mkdir -p /home/vscode/.config/codeql
-echo "--search-path /workspaces/codeql" > /home/vscode/.config/codeql/config
-
-# create a swift extractor pack with the current state
-cd /workspaces/codeql
-bazel run swift/create-extractor-pack
-
-#install and set up pre-commit
-python3 -m pip install pre-commit --no-warn-script-location
-$HOME/.local/bin/pre-commit install

.gitattributes

@@ -39,7 +39,6 @@
 *.py text
 *.lua text
 *.expected text
-*.go text
 
 # Explicitly set a bunch of known extensions to binary, because Git < 2.10 will treat
 # `* text=auto eol=lf` as `* text eol=lf`
@@ -49,25 +48,3 @@
 *.gif -text
 *.dll -text
 *.pdb -text
-
-java/ql/test/stubs/**/*.java linguist-generated=true
-java/ql/test/experimental/stubs/**/*.java linguist-generated=true
-
-# Force git not to modify line endings for go or html files under the go/ql directory
-go/ql/**/*.go -text
-go/ql/**/*.html -text
-# Force git not to modify line endings for go dbschemes
-go/*.dbscheme -text
-# Preserve unusual line ending from codeql-go merge
-go/extractor/opencsv/CSVReader.java -text
-
-# For some languages, upgrade script testing references really old dbscheme
-# files from legacy upgrades that have CRLF line endings. Since upgrade
-# resolution relies on object hashes, we must suppress line ending conversion
-# for those testing dbscheme files.
-*/ql/lib/upgrades/initial/*.dbscheme -text
-
-# Generated test files - these are synced from the standard JavaScript libraries using
-# `javascript/ql/experimental/adaptivethreatmodeling/test/update_endpoint_test_files.py`.
-javascript/ql/experimental/adaptivethreatmodeling/test/endpoint_large_scale/autogenerated/**/*.js linguist-generated=true -merge
-javascript/ql/experimental/adaptivethreatmodeling/test/endpoint_large_scale/autogenerated/**/*.ts linguist-generated=true -merge

.github/actions/fetch-codeql/action.yml

@@ -1,14 +0,0 @@
-name: Fetch CodeQL
-description: Fetches the latest version of CodeQL
-runs:
-  using: composite
-  steps:
-    - name: Fetch CodeQL
-      shell: bash
-      run: |
-        gh extension install github/gh-codeql
-        gh codeql set-channel nightly
-        gh codeql version
-        gh codeql version --format=json | jq -r .unpackedLocation >> "${GITHUB_PATH}"
-      env:
-        GITHUB_TOKEN: ${{ github.token }}

.github/dependabot.yml

@@ -1,26 +0,0 @@
-version: 2
-updates:
-  - package-ecosystem: "cargo"
-    directory: "ruby/node-types"
-    schedule:
-      interval: "daily"
-  - package-ecosystem: "cargo"
-    directory: "ruby/generator"
-    schedule:
-      interval: "daily"
-  - package-ecosystem: "cargo"
-    directory: "ruby/extractor"
-    schedule:
-      interval: "daily"
-  - package-ecosystem: "cargo"
-    directory: "ruby/autobuilder"
-    schedule:
-      interval: "daily"
-
-  - package-ecosystem: "github-actions"
-    directory: "/"
-    schedule:
-      interval: "daily"
-    ignore:
-      - dependency-name: '*'
-        update-types: ['version-update:semver-patch', 'version-update:semver-minor']

.github/labeler.yml

@@ -6,39 +6,19 @@
   - csharp/**/*
   - change-notes/**/*csharp*
 
-Go:
-  - go/**/*
-  - change-notes/**/*go.*
-
 Java:
-  - any: [ 'java/**/*', '!java/kotlin-extractor/**/*', '!java/kotlin-explorer/**/*', '!java/ql/test/kotlin/**/*' ]
+  - java/**/*
   - change-notes/**/*java.*
 
 JS:
-  - any: [ 'javascript/**/*', '!javascript/ql/experimental/adaptivethreatmodeling/**/*' ]
+  - javascript/**/*
   - change-notes/**/*javascript*
 
-Kotlin:
-  - java/kotlin-extractor/**/*
-  - java/kotlin-explorer/**/*
-  - java/ql/test/kotlin/**/*
-
 Python:
   - python/**/*
   - change-notes/**/*python*
 
-Ruby:
-  - ruby/**/*
-  - change-notes/**/*ruby*
-
-Swift:
-  - swift/**/*
-  - change-notes/**/*swift*
-
 documentation:
   - "**/*.qhelp"
   - "**/*.md"
   - docs/**/*
-
-"QL-for-QL":
-  - ql/**/*

.github/problem-matchers/codeql-query-format.json

@@ -1,14 +0,0 @@
-{
-    "problemMatcher": [
-        {
-            "owner": "codeql-query-format",
-            "pattern": [
-                {
-                    "regexp": "^((.*) would change by autoformatting\\.)$",
-                    "file": 2,
-                    "message": 1
-                }
-            ]
-        }
-    ]
-}

.github/problem-matchers/codeql-syntax-check.json

@@ -1,17 +0,0 @@
-{
-    "problemMatcher": [
-        {
-            "owner": "codeql-syntax-check",
-            "pattern": [
-                {
-                    "regexp": "^((ERROR|WARNING): .* \\((.*):(\\d+),(\\d+)-\\d+\\))$",
-                    "message": 1,
-                    "file": 3,
-                    "line": 4,
-                    "col": 5,
-                    "severity": 2
-                }
-            ]
-        }
-    ]
-}

.github/problem-matchers/codeql-test-run.json

@@ -1,14 +0,0 @@
-{
-    "problemMatcher": [
-        {
-            "owner": "codeql-test-run",
-            "pattern": [
-                {
-                    "regexp": "(\\[.*\\] FAILED\\((RESULT|COMPILATION)\\) (.*))$",
-                    "file": 3,
-                    "message": 1
-                }
-            ]
-        }
-    ]
-}

.github/problem-matchers/make.json

@@ -1,13 +0,0 @@
-{
-    "problemMatcher": [
-        {
-            "owner": "make",
-            "pattern": [
-                {
-                    "regexp": "^(make: \\*\\*\\* .*)$",
-                    "message": 1
-                }
-            ]
-        }
-    ]
-}

.github/workflows/check-change-note.yml

@@ -6,12 +6,7 @@ on:
     paths:
       - "*/ql/src/**/*.ql"
       - "*/ql/src/**/*.qll"
-      - "*/ql/lib/**/*.ql"
-      - "*/ql/lib/**/*.qll"
       - "!**/experimental/**"
-      - "!ql/**"
-      - "!swift/**"
-      - ".github/workflows/check-change-note.yml"
 
 jobs:
   check-change-note:
@@ -24,5 +19,5 @@ jobs:
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
         run: |
-          gh api 'repos/${{github.repository}}/pulls/${{github.event.number}}/files' --paginate --jq 'any(.[].filename ; test("/change-notes/.*[.]md$"))' |
-          grep true -c
+          gh api 'repos/${{github.repository}}/pulls/${{github.event.number}}/files' --paginate |
+          jq 'any(.[].filename ; test("/change-notes/.*[.]md$"))' --exit-status

.github/workflows/check-qldoc.yml

@@ -1,50 +0,0 @@
-name: "Check QLdoc coverage"
-
-on:
-  pull_request:
-    paths:
-      - "*/ql/lib/**"
-      - .github/workflows/check-qldoc.yml
-      - .github/actions/fetch-codeql/action.yml
-    branches:
-      - main
-      - "rc/*"
-
-jobs:
-  qldoc:
-    runs-on: ubuntu-latest
-
-    steps:
-      - uses: actions/checkout@v3
-        with:
-          fetch-depth: 2
-
-      - name: Install CodeQL
-        uses: ./.github/actions/fetch-codeql
-
-      - name: Check QLdoc coverage
-        shell: bash
-        run: |
-          EXIT_CODE=0
-          # TODO: remove the swift exception from the regex when we fix generated QLdoc
-          changed_lib_packs="$(git diff --name-only --diff-filter=ACMRT HEAD^ HEAD | { grep -Po '^(?!swift)[a-z]*/ql/lib' || true; } | sort -u)"
-          for pack_dir in ${changed_lib_packs}; do
-            lang="${pack_dir%/ql/lib}"
-            codeql generate library-doc-coverage --output="${RUNNER_TEMP}/${lang}-current.txt" --dir="${pack_dir}"
-          done
-          git checkout HEAD^
-          for pack_dir in ${changed_lib_packs}; do
-            # When we add a new language, pack_dir would not exist in HEAD^.
-            # In this case the right thing to do is to skip the check.
-            [[ ! -d "${pack_dir}" ]] && continue
-            lang="${pack_dir%/ql/lib}"
-            codeql generate library-doc-coverage --output="${RUNNER_TEMP}/${lang}-baseline.txt" --dir="${pack_dir}"
-            awk -F, '{gsub(/"/,""); if ($4==0 && $6=="public") print "\""$3"\"" }' "${RUNNER_TEMP}/${lang}-current.txt" | sort -u > "${RUNNER_TEMP}/current-undocumented.txt"
-            awk -F, '{gsub(/"/,""); if ($4==0 && $6=="public") print "\""$3"\"" }' "${RUNNER_TEMP}/${lang}-baseline.txt" | sort -u > "${RUNNER_TEMP}/baseline-undocumented.txt"
-            UNDOCUMENTED="$(grep -f <(comm -13 "${RUNNER_TEMP}/baseline-undocumented.txt" "${RUNNER_TEMP}/current-undocumented.txt") "${RUNNER_TEMP}/${lang}-current.txt" || true)"
-            if [ -n "$UNDOCUMENTED" ]; then
-              echo "$UNDOCUMENTED" | awk -F, '{gsub(/"/,""); print "::warning file='"${pack_dir}"'/"$1",line="$2"::Missing QLdoc for "$5, $3 }'
-              EXIT_CODE=1
-            fi
-          done
-          exit "${EXIT_CODE}"

.github/workflows/close-stale.yml

@@ -1,30 +0,0 @@
-name: Mark stale issues
-
-on:
-  workflow_dispatch:
-  schedule:
-    - cron: "30 1 * * *"
-
-jobs:
-  stale:
-    if: github.repository == 'github/codeql'
-
-    runs-on: ubuntu-latest
-
-    steps:
-    - uses: actions/stale@v5
-      with:
-        repo-token: ${{ secrets.GITHUB_TOKEN }}
-        stale-issue-message: 'This issue is stale because it has been open 14 days with no activity. Comment or remove the `Stale` label in order to avoid having this issue closed in 7 days.'
-        close-issue-message: 'This issue was closed because it has been inactive for 7 days.'
-        days-before-stale: 14
-        days-before-close: 7
-        only-labels: awaiting-response
-
-        # do not mark PRs as stale
-        days-before-pr-stale: -1
-        days-before-pr-close: -1
-
-        # Uncomment for dry-run
-        # debug-only: true
-        # operations-per-run: 1000

.github/workflows/codeql-analysis.yml

@@ -11,8 +11,6 @@ on:
       - 'rc/*'
     paths:
       - 'csharp/**'
-      - '.github/codeql/**'
-      - '.github/workflows/codeql-analysis.yml'
   schedule:
     - cron: '0 9 * * 1'
 
@@ -21,23 +19,13 @@ jobs:
 
     runs-on: ubuntu-latest
 
-    permissions:
-      contents: read
-      security-events: write
-      pull-requests: read
-
     steps:
-    - name: Setup dotnet
-      uses: actions/setup-dotnet@v2
-      with:
-        dotnet-version: 6.0.202
-
     - name: Checkout repository
-      uses: actions/checkout@v3
+      uses: actions/checkout@v2
 
     # Initializes the CodeQL tools for scanning.
     - name: Initialize CodeQL
-      uses: github/codeql-action/init@main
+      uses: github/codeql-action/init@v1
       # Override language selection by uncommenting this and choosing your languages
       with:
         languages: csharp
@@ -45,18 +33,19 @@ jobs:
 
     # Autobuild attempts to build any compiled languages  (C/C++, C#, or Java).
     # If this step fails, then you should remove it and run the build manually (see below)
-    #- name: Autobuild
-    #  uses: github/codeql-action/autobuild@main
+    - name: Autobuild
+      uses: github/codeql-action/autobuild@v1
 
     # ℹ️ Command-line programs to run using the OS shell.
-    # 📚 https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
+    # 📚 https://git.io/JvXDl
 
     # ✏️ If the Autobuild fails above, remove it and uncomment the following three lines
     #    and modify them (or add more) to build your code if your project
     #    uses a compiled language
 
-    - run: |
-       dotnet build csharp /p:UseSharedCompilation=false
+    #- run: |
+    #   make bootstrap
+    #   make release
 
     - name: Perform CodeQL Analysis
-      uses: github/codeql-action/analyze@main
+      uses: github/codeql-action/analyze@v1

.github/workflows/csv-coverage-metrics.yml

@@ -1,71 +0,0 @@
-name: "Publish framework coverage as metrics"
-
-on:
-  schedule:
-    - cron: '5 0 * * *'
-  push:
-    branches:
-      - main
-  workflow_dispatch:
-  pull_request:
-    branches:
-      - main
-    paths:
-      - ".github/workflows/csv-coverage-metrics.yml"
-      - ".github/actions/fetch-codeql/action.yml"
-
-jobs:
-  publish-java:
-    runs-on: ubuntu-latest
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@v3
-      - name: Setup CodeQL
-        uses: ./.github/actions/fetch-codeql
-      - name: Create empty database
-        run: |
-          DATABASE="${{ runner.temp }}/java-database"
-          PROJECT="${{ runner.temp }}/java-project"
-          mkdir -p "$PROJECT/src/tmp/empty"
-          echo "class Empty {}" >> "$PROJECT/src/tmp/empty/Empty.java"
-          codeql database create "$DATABASE" --language=java --source-root="$PROJECT" --command 'javac src/tmp/empty/Empty.java'
-      - name: Capture coverage information
-        run: |
-          DATABASE="${{ runner.temp }}/java-database"
-          codeql database analyze --format=sarif-latest --output=metrics-java.sarif -- "$DATABASE" ./java/ql/src/Metrics/Summaries/FrameworkCoverage.ql
-      - uses: actions/upload-artifact@v3
-        with:
-          name: metrics-java.sarif
-          path: metrics-java.sarif
-          retention-days: 20
-      - name: Upload SARIF file
-        uses: github/codeql-action/upload-sarif@main
-        with:
-          sarif_file: metrics-java.sarif
-  
-  publish-csharp:
-    runs-on: ubuntu-latest
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@v3
-      - name: Setup CodeQL
-        uses: ./.github/actions/fetch-codeql
-      - name: Create empty database
-        run: |
-          DATABASE="${{ runner.temp }}/csharp-database"
-          PROJECT="${{ runner.temp }}/csharp-project"
-          dotnet new classlib --language=C# --output="$PROJECT"
-          codeql database create "$DATABASE" --language=csharp --source-root="$PROJECT" --command 'dotnet build /t:rebuild csharp-project.csproj /p:UseSharedCompilation=false'
-      - name: Capture coverage information
-        run: |
-          DATABASE="${{ runner.temp }}/csharp-database"
-          codeql database analyze --format=sarif-latest --output=metrics-csharp.sarif -- "$DATABASE" ./csharp/ql/src/Metrics/Summaries/FrameworkCoverage.ql
-      - uses: actions/upload-artifact@v3
-        with:
-          name: metrics-csharp.sarif
-          path: metrics-csharp.sarif
-          retention-days: 20
-      - name: Upload SARIF file
-        uses: github/codeql-action/upload-sarif@main
-        with:
-          sarif_file: metrics-csharp.sarif

.github/workflows/csv-coverage-pr-artifacts.yml

@@ -1,96 +0,0 @@
-name: Check framework coverage changes
-
-on:
-  pull_request:
-    paths:
-      - ".github/workflows/csv-coverage-pr-comment.yml"
-      - ".github/workflows/csv-coverage-pr-artifacts.yml"
-      - ".github/actions/fetch-codeql/action.yml"
-      - "*/ql/src/**/*.ql"
-      - "*/ql/src/**/*.qll"
-      - "*/ql/lib/**/*.ql"
-      - "*/ql/lib/**/*.qll"
-      - "misc/scripts/library-coverage/*.py"
-      # input data files
-      - "*/documentation/library-coverage/cwe-sink.csv"
-      - "*/documentation/library-coverage/frameworks.csv"
-    branches:
-      - main
-      - "rc/*"
-
-jobs:
-  generate:
-    name: Generate framework coverage artifacts
-
-    runs-on: ubuntu-latest
-
-    steps:
-      - name: Dump GitHub context
-        env:
-          GITHUB_CONTEXT: ${{ toJSON(github.event) }}
-        run: echo "$GITHUB_CONTEXT"
-      - name: Clone self (github/codeql) - MERGE
-        uses: actions/checkout@v3
-        with:
-          path: merge
-      - name: Clone self (github/codeql) - BASE
-        uses: actions/checkout@v3
-        with:
-          fetch-depth: 2
-          path: base
-      - run: |
-          git checkout HEAD^1
-          git log -1 --format='%H'
-        working-directory: base
-      - name: Set up Python 3.8
-        uses: actions/setup-python@v4
-        with:
-          python-version: 3.8
-      - name: Download CodeQL CLI
-        uses: ./merge/.github/actions/fetch-codeql
-      - name: Generate CSV files on merge commit of the PR
-        run: |
-          echo "Running generator on merge"
-          python merge/misc/scripts/library-coverage/generate-report.py ci merge merge
-          mkdir out_merge
-          cp framework-coverage-*.csv out_merge/
-          cp framework-coverage-*.rst out_merge/
-      - name: Generate CSV files on base commit of the PR
-        run: |
-          echo "Running generator on base"
-          python base/misc/scripts/library-coverage/generate-report.py ci base base
-          mkdir out_base
-          cp framework-coverage-*.csv out_base/
-          cp framework-coverage-*.rst out_base/
-      - name: Generate diff of coverage reports
-        run: |
-          python base/misc/scripts/library-coverage/compare-folders.py out_base out_merge comparison.md
-      - name: Upload CSV package list
-        uses: actions/upload-artifact@v3
-        with:
-          name: csv-framework-coverage-merge
-          path: |
-            out_merge/framework-coverage-*.csv
-            out_merge/framework-coverage-*.rst
-      - name: Upload CSV package list
-        uses: actions/upload-artifact@v3
-        with:
-          name: csv-framework-coverage-base
-          path: |
-            out_base/framework-coverage-*.csv
-            out_base/framework-coverage-*.rst
-      - name: Upload comparison results
-        uses: actions/upload-artifact@v3
-        with:
-          name: comparison
-          path: |
-            comparison.md
-      - name: Save PR number
-        run: |
-          mkdir -p pr
-          echo ${{ github.event.pull_request.number }} > pr/NR
-      - name: Upload PR number
-        uses: actions/upload-artifact@v3
-        with:
-          name: pr
-          path: pr/

.github/workflows/csv-coverage-pr-comment.yml

@@ -1,34 +0,0 @@
-name: Comment on PR with framework coverage changes
-
-on:
-  workflow_run:
-    workflows: ["Check framework coverage changes"]
-    types:
-      - completed
-
-jobs:
-  check:
-    name: Check framework coverage differences and comment
-    runs-on: ubuntu-latest
-    if: >
-      ${{ github.event.workflow_run.event == 'pull_request' &&
-      github.event.workflow_run.conclusion == 'success' }}
-
-    steps:
-    - name: Dump GitHub context
-      env:
-        GITHUB_CONTEXT: ${{ toJSON(github.event) }}
-      run: echo "$GITHUB_CONTEXT"
-    - name: Clone self (github/codeql)
-      uses: actions/checkout@v3
-    - name: Set up Python 3.8
-      uses: actions/setup-python@v4
-      with:
-        python-version: 3.8
-
-    - name: Check coverage difference file and comment
-      env:
-        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-        RUN_ID: ${{ github.event.workflow_run.id }}
-      run: |
-        python misc/scripts/library-coverage/comment-pr.py "$GITHUB_REPOSITORY" "$RUN_ID"

.github/workflows/csv-coverage-timeseries.yml

@@ -1,33 +0,0 @@
-name: Build framework coverage timeseries reports
-
-on:
-  workflow_dispatch:
-
-jobs:
-  build:
-    runs-on: ubuntu-latest
-
-    steps:
-      - name: Clone self (github/codeql)
-        uses: actions/checkout@v3
-        with:
-          path: script
-      - name: Clone self (github/codeql) for analysis
-        uses: actions/checkout@v3
-        with:
-          path: codeqlModels
-          fetch-depth: 0
-      - name: Set up Python 3.8
-        uses: actions/setup-python@v4
-        with:
-          python-version: 3.8
-      - name: Download CodeQL CLI
-        uses: ./script/.github/actions/fetch-codeql
-      - name: Build modeled package list
-        run: |
-          python script/misc/scripts/library-coverage/generate-timeseries.py codeqlModels
-      - name: Upload timeseries CSV
-        uses: actions/upload-artifact@v3
-        with:
-          name: framework-coverage-timeseries
-          path: framework-coverage-timeseries-*.csv

.github/workflows/csv-coverage-update.yml

@@ -1,38 +0,0 @@
-name: Update framework coverage reports
-
-on:
-  workflow_dispatch:
-  schedule:
-    - cron: "0 0 * * *"
-
-jobs:
-  update:
-    name: Update framework coverage report
-    if: github.repository == 'github/codeql'
-    runs-on: ubuntu-latest
-
-    steps:
-      - name: Dump GitHub context
-        env:
-          GITHUB_CONTEXT: ${{ toJSON(github.event) }}
-        run: echo "$GITHUB_CONTEXT"
-      - name: Clone self (github/codeql)
-        uses: actions/checkout@v3
-        with:
-          path: ql
-          fetch-depth: 0
-      - name: Set up Python 3.8
-        uses: actions/setup-python@v4
-        with:
-          python-version: 3.8
-      - name: Download CodeQL CLI
-        uses: ./ql/.github/actions/fetch-codeql
-      - name: Generate coverage files
-        run: |
-          python ql/misc/scripts/library-coverage/generate-report.py ci ql ql
-
-      - name: Create pull request with changes
-        env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-        run: |
-          python ql/misc/scripts/library-coverage/create-pr.py ql "$GITHUB_REPOSITORY"

.github/workflows/csv-coverage.yml

@@ -1,42 +0,0 @@
-name: Build framework coverage reports
-
-on:
-  workflow_dispatch:
-    inputs:
-      qlModelShaOverride:
-        description: "github/codeql repo SHA used for looking up the CSV models"
-        required: false
-
-jobs:
-  build:
-    runs-on: ubuntu-latest
-
-    steps:
-      - name: Clone self (github/codeql)
-        uses: actions/checkout@v3
-        with:
-          path: script
-      - name: Clone self (github/codeql) for analysis
-        uses: actions/checkout@v3
-        with:
-          path: codeqlModels
-          ref: ${{ github.event.inputs.qlModelShaOverride || github.ref }}
-      - name: Set up Python 3.8
-        uses: actions/setup-python@v4
-        with:
-          python-version: 3.8
-      - name: Download CodeQL CLI
-        uses: ./script/.github/actions/fetch-codeql
-      - name: Build modeled package list
-        run: |
-          python script/misc/scripts/library-coverage/generate-report.py ci codeqlModels script
-      - name: Upload CSV package list
-        uses: actions/upload-artifact@v3
-        with:
-          name: framework-coverage-csv
-          path: framework-coverage-*.csv
-      - name: Upload RST package list
-        uses: actions/upload-artifact@v3
-        with:
-          name: framework-coverage-rst
-          path: framework-coverage-*.rst

.github/workflows/go-tests.yml

@@ -1,114 +0,0 @@
-name: "Go: Run Tests"
-on:
-  pull_request:
-    paths:
-      - "go/**"
-      - .github/workflows/go-tests.yml
-      - .github/actions/fetch-codeql/action.yml
-      - codeql-workspace.yml
-jobs:
-  test-linux:
-    name: Test Linux (Ubuntu)
-    runs-on: ubuntu-latest
-    steps:
-      - name: Set up Go 1.18.1
-        uses: actions/setup-go@v3
-        with:
-          go-version: 1.18.1
-        id: go
-
-      - name: Check out code
-        uses: actions/checkout@v2
-
-      - name: Set up CodeQL CLI
-        uses: ./.github/actions/fetch-codeql
-
-      - name: Enable problem matchers in repository
-        shell: bash
-        run: 'find .github/problem-matchers -name \*.json -exec echo "::add-matcher::{}" \;'
-
-      - name: Build
-        run: |
-          cd go
-          make
-
-      - name: Check that all QL and Go code is autoformatted
-        run: |
-          cd go
-          make check-formatting
-
-      - name: Compile qhelp files to markdown
-        run: |
-          cd go
-          env QHELP_OUT_DIR=qhelp-out make qhelp-to-markdown
-
-      - name: Upload qhelp markdown
-        uses: actions/upload-artifact@v2
-        with:
-          name: qhelp-markdown
-          path: go/qhelp-out/**/*.md
-
-      - name: Test
-        run: |
-          cd go
-          make test
-
-  test-mac:
-    name: Test MacOS
-    runs-on: macos-latest
-    steps:
-      - name: Set up Go 1.18.1
-        uses: actions/setup-go@v3
-        with:
-          go-version: 1.18.1
-        id: go
-
-      - name: Check out code
-        uses: actions/checkout@v2
-
-      - name: Set up CodeQL CLI
-        uses: ./.github/actions/fetch-codeql
-
-      - name: Enable problem matchers in repository
-        shell: bash
-        run: 'find .github/problem-matchers -name \*.json -exec echo "::add-matcher::{}" \;'
-
-      - name: Build
-        run: |
-          cd go
-          make
-
-      - name: Test
-        run: |
-          cd go
-          make test
-
-  test-win:
-    name: Test Windows
-    runs-on: windows-2019
-    steps:
-      - name: Set up Go 1.18.1
-        uses: actions/setup-go@v3
-        with:
-          go-version: 1.18.1
-        id: go
-
-      - name: Check out code
-        uses: actions/checkout@v2
-
-      - name: Set up CodeQL CLI
-        uses: ./.github/actions/fetch-codeql
-
-      - name: Enable problem matchers in repository
-        shell: bash
-        run: 'find .github/problem-matchers -name \*.json -exec echo "::add-matcher::{}" \;'
-
-      - name: Build
-        run: |
-          cd go
-          make
-
-      - name: Test
-        run: |
-          cd go
-          make test

.github/workflows/js-ml-tests.yml

@@ -1,81 +0,0 @@
-name: JS ML-powered queries tests
-
-on:
-  push:
-    paths:
-      - "javascript/ql/experimental/adaptivethreatmodeling/**"
-      - .github/workflows/js-ml-tests.yml
-      - .github/actions/fetch-codeql/action.yml
-      - codeql-workspace.yml
-    branches:
-      - main
-      - "rc/*"
-  pull_request:
-    paths:
-      - "javascript/ql/experimental/adaptivethreatmodeling/**"
-      - .github/workflows/js-ml-tests.yml
-      - .github/actions/fetch-codeql/action.yml
-      - codeql-workspace.yml
-  workflow_dispatch:
-
-defaults:
-  run:
-    working-directory: javascript/ql/experimental/adaptivethreatmodeling
-
-jobs:
-  qlformat:
-    name: Check QL formatting
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-
-      - uses: ./.github/actions/fetch-codeql
-
-      - name: Check QL formatting
-        run: |
-          find . "(" -name "*.ql" -or -name "*.qll" ")" -print0 | \
-            xargs -0 codeql query format --check-only
-
-  qlcompile:
-    name: Check QL compilation
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-
-      - uses: ./.github/actions/fetch-codeql
-
-      - name: Install pack dependencies
-        run: |
-          for pack in modelbuilding src; do
-            codeql pack install --mode verify -- "${pack}"
-          done
-
-      - name: Check QL compilation
-        run: |
-          codeql query compile \
-            --check-only \
-            --ram 5120 \
-            --additional-packs "${{ github.workspace }}" \
-            --threads=0 \
-            -- \
-            lib modelbuilding src
-
-  qltest:
-    name: Run QL tests
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-
-      - uses: ./.github/actions/fetch-codeql
-
-      - name: Install pack dependencies
-        run: codeql pack install -- test
-
-      - name: Run QL tests
-        run: |
-          codeql test run \
-            --threads=0 \
-            --ram 5120 \
-            --additional-packs "${{ github.workspace }}" \
-            -- \
-            test

.github/workflows/labeler.yml

@@ -4,11 +4,8 @@ on:
 
 jobs:
   triage:
-    permissions:
-      contents: read
-      pull-requests: write
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/labeler@v4
+    - uses: actions/labeler@v2
       with:
         repo-token: "${{ secrets.GITHUB_TOKEN }}"

.github/workflows/mad_modelDiff.yml

@@ -1,103 +0,0 @@
-name: Models as Data - Diff
-
-on:
-  workflow_dispatch:
-    inputs:
-      projects:
-        description: "The projects to generate models for"
-        required: true
-        default: '["netty/netty"]'
-  pull_request:
-    branches:
-      - main
-    paths:
-      - "java/ql/src/utils/model-generator/**/*.*"
-      - ".github/workflows/mad_modelDiff.yml"
-
-permissions:
-  contents: read
-
-jobs:
-  model-diff:
-    name: Model Difference
-    runs-on: ubuntu-latest
-    if: github.repository == 'github/codeql'
-    strategy:
-      matrix:
-        slug: ${{fromJson(github.event.inputs.projects || '["apache/commons-codec", "apache/commons-io", "apache/commons-beanutils", "apache/commons-logging", "apache/commons-fileupload", "apache/commons-lang", "apache/commons-validator", "apache/commons-csv", "apache/dubbo"]' )}}
-    steps:
-      - name: Clone github/codeql from PR
-        uses: actions/checkout@v3
-        if: github.event.pull_request
-        with:
-          path: codeql-pr
-      - name: Clone github/codeql from main
-        uses: actions/checkout@v3
-        with:
-          path: codeql-main
-          ref: main
-      - uses: ./codeql-main/.github/actions/fetch-codeql
-      - name: Download database
-        env:
-          SLUG: ${{ matrix.slug }}
-        run: |
-          set -x
-          mkdir lib-dbs
-          SHORTNAME=${SLUG//[^a-zA-Z0-9_]/}
-          projectId=`curl -s https://lgtm.com/api/v1.0/projects/g/${SLUG} | jq .id`
-          curl -L "https://lgtm.com/api/v1.0/snapshots/$projectId/java" -o "$SHORTNAME.zip"
-          unzip -q -d "${SHORTNAME}-db" "${SHORTNAME}.zip"
-          mkdir "lib-dbs/$SHORTNAME/"
-          mv "${SHORTNAME}-db/"$(ls -1 "${SHORTNAME}"-db)/* "lib-dbs/${SHORTNAME}/"
-      - name: Generate Models (PR and main)
-        run: |
-          set -x
-          mkdir tmp-models
-          MODELS=`pwd`/tmp-models
-          DATABASES=`pwd`/lib-dbs
-
-          analyzeDatabaseWithCheckout() {
-            QL_VARIANT=$1
-            DATABASE=$2
-            cd codeql-$QL_VARIANT
-            SHORTNAME=`basename $DATABASE`
-            python java/ql/src/utils/model-generator/GenerateFlowModel.py --with-summaries --with-sinks $DATABASE $MODELS/${SHORTNAME}.qll
-            mv $MODELS/${SHORTNAME}.qll $MODELS/${SHORTNAME}Generated_${QL_VARIANT}.qll
-            cd ..
-          }
-
-          for d in $DATABASES/*/ ; do
-            ls -1 "$d"
-
-            analyzeDatabaseWithCheckout "main" $d
-            if [[ "$GITHUB_EVENT_NAME" == "pull_request" ]]
-            then
-              analyzeDatabaseWithCheckout "pr" $d
-            fi
-          done
-      - name: Install diff2html
-        if: github.event.pull_request
-        run: |
-          npm install -g diff2html-cli
-      - name: Generate Model Diff
-        if: github.event.pull_request
-        run: |
-          set -x
-          MODELS=`pwd`/tmp-models
-          ls -1 tmp-models/
-          for m in $MODELS/*_main.qll ; do
-            t="${m/main/"pr"}"
-            basename=`basename $m`
-            name="diff_${basename/_main.qll/""}"
-            (diff -w -u $m $t | diff2html -i stdin -F $MODELS/$name.html) || true
-          done
-      - uses: actions/upload-artifact@v3
-        with:
-          name: models
-          path: tmp-models/*.qll
-          retention-days: 20
-      - uses: actions/upload-artifact@v3
-        with:
-          name: diffs
-          path: tmp-models/*.html
-          retention-days: 20

.github/workflows/mad_regenerate-models.yml

@@ -1,63 +0,0 @@
-name: Regenerate framework models
-
-on:
-  workflow_dispatch:
-  schedule:
-    - cron: "30 2 * * *"
-  pull_request:
-    branches:
-      - main
-    paths:
-      - ".github/workflows/mad_regenerate-models.yml"
-      - ".github/actions/fetch-codeql/action.yml"
-
-jobs:
-  regenerate-models:
-    runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        # placeholder required for each axis, excluded below, replaced by the actual combinations (see include)
-        slug: ["placeholder"]
-        ref: ["placeholder"]
-        include:
-          - slug: "apache/commons-io"
-            ref: "13258ce2d07aa0e764bbaa8020af4dcd3a02a620"
-        exclude:
-          - slug: "placeholder"
-            ref: "placeholder"
-    steps:
-      - name: Clone self (github/codeql)
-        uses: actions/checkout@v3
-      - name: Setup CodeQL binaries
-        uses: ./.github/actions/fetch-codeql
-      - name: Clone repositories
-        uses: actions/checkout@v3
-        with:
-          path: repos/${{ matrix.ref }}
-          ref: ${{ matrix.ref }}
-          repository: ${{ matrix.slug }}
-      - name: Build database
-        env:
-          SLUG: ${{ matrix.slug }}
-          REF: ${{ matrix.ref }}
-        run: |
-          mkdir dbs
-          cd repos/${REF}
-          SHORTNAME=${SLUG//[^a-zA-Z0-9_]/}
-          codeql database create --language=java ../../dbs/${SHORTNAME}
-      - name: Regenerate models in-place
-        env:
-          SLUG: ${{ matrix.slug }}
-        run: |
-          SHORTNAME=${SLUG//[^a-zA-Z0-9_]/}
-          java/ql/src/utils/model-generator/RegenerateModels.py "${SLUG}" dbs/${SHORTNAME}
-      - name: Stage changes
-        run: |
-          find java -name "*.qll" -print0 | xargs -0 git add
-          git status
-          git diff --cached > models.patch
-      - uses: actions/upload-artifact@v3
-        with:
-          name: patch
-          path: models.patch
-          retention-days: 7

.github/workflows/post-pr-comment.yml

@@ -1,74 +0,0 @@
-# This workflow is the second part of the process described in
-# .github/workflows/qhelp-pr-preview.yml
-# See that file for more info.
-
-name: Post PR comment
-on:
-  workflow_run:
-    workflows: [Render QHelp changes]
-    types:
-      - completed
-
-permissions:
-  pull-requests: write
-  actions: read
-
-jobs:
-  post_comment:
-    runs-on: ubuntu-latest
-    steps:
-      - name: Download artifact
-        run: gh run download "${WORKFLOW_RUN_ID}" --repo "${GITHUB_REPOSITORY}" --name "comment"
-        env:
-          GITHUB_TOKEN: ${{ github.token }}
-          WORKFLOW_RUN_ID: ${{ github.event.workflow_run.id }}
-
-      - name: Check that PR SHA matches workflow SHA
-        run: |
-          PR="$(grep -o '^[0-9]\+$' pr_number.txt)"
-          PR_HEAD_SHA="$(gh api "/repos/${GITHUB_REPOSITORY}/pulls/${PR}" --jq .head.sha)"
-          # Check that the pull-request head SHA matches the head SHA of the workflow run
-          if [ "${WORKFLOW_RUN_HEAD_SHA}" != "${PR_HEAD_SHA}" ]; then
-            echo "PR head SHA ${PR_HEAD_SHA} does not match workflow_run event SHA ${WORKFLOW_RUN_HEAD_SHA}. Stopping." 1>&2
-            exit 1
-          fi
-        env:
-          GITHUB_TOKEN: ${{ github.token }}
-          WORKFLOW_RUN_HEAD_SHA: ${{ github.event.workflow_run.head_commit.id }}
-
-      - name: Create or update comment
-        run: |
-          COMMENT_PREFIX="QHelp previews"
-          COMMENT_AUTHOR="github-actions[bot]"
-          PR_NUMBER="$(grep -o '^[0-9]\+$' pr_number.txt)"
-
-          # If there is no existing comment, comment_id.txt will contain just a
-          # newline (due to jq & gh behaviour). This will cause grep to fail, so
-          # we catch that.
-          RAW_COMMENT_ID=$(grep -o '^[0-9]\+$' comment_id.txt || true)
-
-          if [ $RAW_COMMENT_ID ]
-          then
-            # Fetch existing comment, and validate:
-            # - comment belongs to the PR with number $PR_NUMBER
-            # - comment starts with the expected prefix ("QHelp previews")
-            # - comment author is github-actions[bot]
-            FILTER='select(.issue_url | endswith($repo+"/issues/"+$pr))
-                  | select(.body | startswith($prefix))
-                  | select(.user.login == $author)
-                  | .id'
-            COMMENT_ID=$(gh api "repos/${GITHUB_REPOSITORY}/issues/comments/${RAW_COMMENT_ID}" | jq --arg repo "${GITHUB_REPOSITORY}" --arg pr "${PR_NUMBER}" --arg prefix "${COMMENT_PREFIX}" --arg author "${COMMENT_AUTHOR}" "${FILTER}")
-            if [ $COMMENT_ID ]
-            then
-              # Update existing comment
-              jq --rawfile body comment_body.txt '{"body":$body}' -n | gh api "repos/${GITHUB_REPOSITORY}/issues/comments/${COMMENT_ID}" -X PATCH --input -
-            else
-              echo "Comment ${RAW_COMMENT_ID} did not pass validations: not editing." >&2
-              exit 1
-            fi
-          else
-            # Create new comment
-            jq --rawfile body comment_body.txt '{"body":$body}' -n | gh api "repos/${GITHUB_REPOSITORY}/issues/${PR_NUMBER}/comments" -X POST --input -
-          fi
-        env:
-          GITHUB_TOKEN: ${{ github.token }}

.github/workflows/qhelp-pr-preview.yml

@@ -1,102 +0,0 @@
-# This workflow checks for any changes in .qhelp files in pull requests.
-# For any changed files, it renders them to markdown in a file called `comment_body.txt`.
-# It then checks if there's an existing comment on the pull request generated by
-# this workflow, and writes the comment ID to `comment_id.txt`.
-# It also writes the PR number to `pr_number.txt`.
-# These three files are uploaded as an artifact.
-
-# When this workflow completes, the workflow "Post PR comment" runs.
-# It downloads the artifact and adds a comment to the PR with the rendered
-# QHelp.
-
-# The task is split like this because creating PR comments requires extra
-# permissions that we don't want to expose to PRs from external forks.
-
-# For more info see:
-# https://docs.github.com/en/actions/using-workflows/events-that-trigger-workflows#workflow_run
-# https://docs.github.com/en/actions/security-guides/automatic-token-authentication#permissions-for-the-github_token
-name: Render QHelp changes
-
-permissions:
-  contents: read
-  pull-requests: read
-
-on:
-  pull_request:
-    branches:
-      - main
-      - "rc/*"
-    paths:
-      - "ruby/**/*.qhelp"
-
-jobs:
-  qhelp:
-    runs-on: ubuntu-latest
-    steps:
-      - run: echo "${PR_NUMBER}" > pr_number.txt
-        env:
-          PR_NUMBER: ${{ github.event.number }}
-      - uses: actions/upload-artifact@v3
-        with:
-          name: comment
-          path: pr_number.txt
-          if-no-files-found: error
-          retention-days: 1
-
-      - uses: actions/checkout@v3
-        with:
-          fetch-depth: 2
-          persist-credentials: false
-      - uses: ./.github/actions/fetch-codeql
-      - name: Determine changed files
-        id: changes
-        run: |
-          (git diff -z --name-only --diff-filter=ACMRT HEAD~1 HEAD | grep -z '.qhelp$' | grep -z -v '.inc.qhelp';
-           git diff -z --name-only --diff-filter=ACMRT HEAD~1 HEAD | grep -z '.inc.qhelp$' | xargs --null -rn1 basename | xargs --null -rn1 git grep -z -l) |
-           grep -z '.qhelp$' | grep -z -v '^-' | sort -z -u > "${RUNNER_TEMP}/paths.txt"
-
-      - name: QHelp preview
-        run: |
-          EXIT_CODE=0
-          echo "QHelp previews:" > comment_body.txt
-          while read -r -d $'\0' path; do
-            if [ ! -f "${path}" ]; then
-               exit 1
-            fi
-            echo "<details> <summary>${path}</summary>"
-            echo
-            codeql generate query-help --format=markdown -- "./${path}" 2> errors.txt || EXIT_CODE="$?"
-            if [ -s errors.txt ]; then
-               echo "# errors/warnings:"
-               echo '```'
-               cat errors.txt
-               cat errors.txt 1>&2
-               echo '```'
-            fi
-            echo "</details>"
-          done < "${RUNNER_TEMP}/paths.txt" >> comment_body.txt
-          exit "${EXIT_CODE}"
-
-      - if: always()
-        uses: actions/upload-artifact@v3
-        with:
-          name: comment
-          path: comment_body.txt
-          if-no-files-found: error
-          retention-days: 1
-
-      - name: Save ID of existing QHelp comment (if it exists)
-        run: |
-          # Find the latest comment starting with "QHelp previews"
-          COMMENT_PREFIX="QHelp previews"
-          gh api "repos/${GITHUB_REPOSITORY}/issues/${PR_NUMBER}/comments" --paginate | jq --arg prefix "${COMMENT_PREFIX}" '[.[] | select(.body|startswith($prefix)) | .id] | max' > comment_id.txt
-        env:
-          GITHUB_TOKEN: ${{ github.token }}
-          PR_NUMBER: ${{ github.event.number }}
-
-      - uses: actions/upload-artifact@v3
-        with:
-          name: comment
-          path: comment_id.txt
-          if-no-files-found: error
-          retention-days: 1

.github/workflows/ql-for-ql-build.yml

@@ -1,188 +0,0 @@
-name: Run QL for QL
-
-on:
-  push:
-    branches: [main]
-  pull_request:
-    branches: [main]
-
-env:
-  CARGO_TERM_COLOR: always
-
-jobs:
-  analyze:
-    runs-on: ubuntu-latest-xl
-    steps:
-      ### Build the queries ###
-      - uses: actions/checkout@v3
-      - name: Find codeql
-        id: find-codeql
-        uses: github/codeql-action/init@aa93aea877e5fb8841bcb1193f672abf6e9f2980
-        with:
-          languages: javascript # does not matter
-      - name: Get CodeQL version
-        id: get-codeql-version
-        run: |
-          echo "::set-output name=version::$("${CODEQL}" --version | head -n 1 | rev | cut -d " " -f 1 | rev)"
-        shell: bash
-        env:
-          CODEQL: ${{ steps.find-codeql.outputs.codeql-path }}
-      - name: Cache queries
-        id: cache-queries
-        uses: actions/cache@v3
-        with:
-          path: ${{ runner.temp }}/query-pack.zip
-          key: queries-${{ hashFiles('ql/**/*.ql*') }}-${{ hashFiles('ql/**/qlpack.yml') }}-${{ hashFiles('ql/ql/src/ql.dbscheme*') }}-${{ steps.get-codeql-version.outputs.version }}
-      - name: Build query pack
-        if: steps.cache-queries.outputs.cache-hit != 'true'
-        run: |
-          cd ql/ql/src
-          "${CODEQL}" pack create
-          cd .codeql/pack/codeql/ql/0.0.0
-          zip "${PACKZIP}" -r .
-        env:
-          CODEQL: ${{ steps.find-codeql.outputs.codeql-path }}
-          PACKZIP: ${{ runner.temp }}/query-pack.zip
-      - name: Upload query pack
-        uses: actions/upload-artifact@v3
-        with:
-          name: query-pack-zip
-          path: ${{ runner.temp }}/query-pack.zip
-
-      ### Build the extractor ###
-      - name: Cache entire extractor
-        id: cache-extractor
-        uses: actions/cache@v3
-        with:
-          path: |
-            ql/target/release/ql-autobuilder
-            ql/target/release/ql-autobuilder.exe
-            ql/target/release/ql-extractor
-            ql/target/release/ql-extractor.exe
-          key: ${{ runner.os }}-extractor-${{ hashFiles('ql/**/Cargo.lock') }}-${{ hashFiles('ql/**/*.rs') }}
-      - name: Cache cargo
-        if: steps.cache-extractor.outputs.cache-hit != 'true'
-        uses: actions/cache@v3
-        with:
-          path: |
-            ~/.cargo/registry
-            ~/.cargo/git
-            ql/target
-          key: ${{ runner.os }}-rust-cargo-${{ hashFiles('ql/**/Cargo.lock') }}
-      - name: Check formatting
-        if: steps.cache-extractor.outputs.cache-hit != 'true'
-        run: cd ql; cargo fmt --all -- --check
-      - name: Build
-        if: steps.cache-extractor.outputs.cache-hit != 'true'
-        run: cd ql; cargo build --verbose
-      - name: Run tests
-        if: steps.cache-extractor.outputs.cache-hit != 'true'
-        run: cd ql; cargo test --verbose
-      - name: Release build
-        if: steps.cache-extractor.outputs.cache-hit != 'true'
-        run: cd ql; cargo build --release
-      - name: Generate dbscheme
-        if: steps.cache-extractor.outputs.cache-hit != 'true'
-        run: ql/target/release/ql-generator --dbscheme ql/ql/src/ql.dbscheme --library ql/ql/src/codeql_ql/ast/internal/TreeSitter.qll
-      - uses: actions/upload-artifact@v3
-        with:
-          name: extractor-ubuntu-latest
-          path: |
-            ql/target/release/ql-autobuilder
-            ql/target/release/ql-autobuilder.exe
-            ql/target/release/ql-extractor
-            ql/target/release/ql-extractor.exe
-          retention-days: 1
-
-      ### Package the queries and extractor ###
-      - uses: actions/download-artifact@v3
-        with:
-          name: query-pack-zip
-          path: query-pack-zip
-      - uses: actions/download-artifact@v3
-        with:
-          name: extractor-ubuntu-latest
-          path: linux64
-      - run: |
-          unzip query-pack-zip/*.zip -d pack
-          cp -r ql/codeql-extractor.yml ql/tools ql/ql/src/ql.dbscheme.stats pack/
-          mkdir -p pack/tools/linux64
-          if [[ -f linux64/ql-autobuilder ]]; then
-            cp linux64/ql-autobuilder pack/tools/linux64/autobuilder
-            chmod +x pack/tools/linux64/autobuilder
-          fi
-          if [[ -f linux64/ql-extractor ]]; then
-            cp linux64/ql-extractor pack/tools/linux64/extractor
-            chmod +x pack/tools/linux64/extractor
-          fi
-          cd pack
-          zip -rq ../codeql-ql.zip .
-      - uses: actions/upload-artifact@v3
-        with:
-          name: codeql-ql-pack
-          path: codeql-ql.zip
-          retention-days: 1
-
-      ### Run the analysis ###
-      - name: Download pack
-        uses: actions/download-artifact@v3
-        with:
-          name: codeql-ql-pack
-          path: ${{ runner.temp }}/codeql-ql-pack-artifact
-
-      - name: Prepare pack
-        run: |
-          unzip "${PACK_ARTIFACT}/*.zip" -d "${PACK}"
-        env:
-          PACK_ARTIFACT: ${{ runner.temp }}/codeql-ql-pack-artifact
-          PACK: ${{ runner.temp }}/pack
-      - name: Hack codeql-action options
-        run: |
-          JSON=$(jq -nc --arg pack "${PACK}" '.database."run-queries"=["--search-path", $pack] | .resolve.queries=["--search-path", $pack] | .resolve.extractor=["--search-path", $pack] | .database.init=["--search-path", $pack]')
-          echo "CODEQL_ACTION_EXTRA_OPTIONS=${JSON}" >> ${GITHUB_ENV}
-        env:
-          PACK: ${{ runner.temp }}/pack
-
-      - name: Create CodeQL config file
-        run: |
-          echo "paths-ignore:" >> ${CONF}
-          echo "  - ql/ql/test" >> ${CONF} 
-          echo "  - \"*/ql/lib/upgrades/\"" >> ${CONF} 
-          echo "disable-default-queries: true" >> ${CONF}
-          echo "packs:" >> ${CONF}
-          echo "  - codeql/ql" >> ${CONF}
-          echo "Config file: "
-          cat ${CONF}
-        env: 
-          CONF: ./ql-for-ql-config.yml
-      - name: Initialize CodeQL
-        uses: github/codeql-action/init@aa93aea877e5fb8841bcb1193f672abf6e9f2980
-        with:
-          languages: ql
-          db-location: ${{ runner.temp }}/db
-          config-file: ./ql-for-ql-config.yml
-
-      - name: Perform CodeQL Analysis
-        uses: github/codeql-action/analyze@aa93aea877e5fb8841bcb1193f672abf6e9f2980
-        with: 
-          category: "ql-for-ql"
-      - name: Copy sarif file to CWD
-        run: cp ../results/ql.sarif ./ql-for-ql.sarif
-      - name: Fixup the $scema in sarif  # Until https://github.com/microsoft/sarif-vscode-extension/pull/436/ is part in a stable release
-        run: |
-          sed -i 's/\$schema.*/\$schema": "https:\/\/raw.githubusercontent.com\/oasis-tcs\/sarif-spec\/master\/Schemata\/sarif-schema-2.1.0",/' ql-for-ql.sarif 
-      - name: Sarif as artifact
-        uses: actions/upload-artifact@v3
-        with:
-          name: ql-for-ql.sarif
-          path: ql-for-ql.sarif
-      - name: Split out the sarif file into langs
-        run: |
-          mkdir split-sarif
-          node ./ql/scripts/split-sarif.js ql-for-ql.sarif split-sarif
-      - name: Upload langs as artifacts
-        uses: actions/upload-artifact@v3
-        with:
-          name: ql-for-ql-langs
-          path: split-sarif
-          retention-days: 1

.github/workflows/ql-for-ql-dataset_measure.yml

@@ -1,83 +0,0 @@
-name: Collect database stats for QL for QL
-
-on:
-  push:
-    branches: [main]
-    paths:
-      - ql/ql/src/ql.dbscheme
-  pull_request:
-    branches: [main]
-    paths:
-      - ql/ql/src/ql.dbscheme
-  workflow_dispatch:
-
-jobs:
-  measure:
-    env:
-      CODEQL_THREADS: 4 # TODO: remove this once it's set by the CLI
-    strategy:
-      matrix:
-        repo:
-          - github/codeql
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-
-      - name: Find codeql
-        id: find-codeql
-        uses: github/codeql-action/init@aa93aea877e5fb8841bcb1193f672abf6e9f2980
-        with:
-          languages: javascript # does not matter
-      - uses: actions/cache@v3
-        with:
-          path: |
-            ~/.cargo/registry
-            ~/.cargo/git
-            ql/target
-          key: ${{ runner.os }}-qltest-cargo-${{ hashFiles('ql/**/Cargo.lock') }}
-      - name: Build Extractor
-        run: cd ql; env "PATH=$PATH:`dirname ${CODEQL}`" ./scripts/create-extractor-pack.sh
-        env:
-          CODEQL: ${{ steps.find-codeql.outputs.codeql-path }}
-      - name: Checkout ${{ matrix.repo }}
-        uses: actions/checkout@v3
-        with:
-          repository: ${{ matrix.repo }}
-          path: ${{ github.workspace }}/repo
-      - name: Create database
-        run: |
-          "${CODEQL}" database create \
-            --search-path "ql/extractor-pack" \
-            --threads 4 \
-            --language ql --source-root "${{ github.workspace }}/repo" \
-            "${{ runner.temp }}/database"
-        env:
-          CODEQL: ${{ steps.find-codeql.outputs.codeql-path }}
-      - name: Measure database
-        run: |
-          mkdir -p "stats/${{ matrix.repo }}"
-          "${CODEQL}" dataset measure --threads 4 --output "stats/${{ matrix.repo }}/stats.xml" "${{ runner.temp }}/database/db-ql"
-        env:
-          CODEQL: ${{ steps.find-codeql.outputs.codeql-path }}
-      - uses: actions/upload-artifact@v3
-        with:
-          name: measurements
-          path: stats
-          retention-days: 1
-
-  merge:
-    runs-on: ubuntu-latest
-    needs: measure
-    steps:
-      - uses: actions/checkout@v3
-      - uses: actions/download-artifact@v3
-        with:
-          name: measurements
-          path: stats
-      - run: |
-          python -m pip install --user lxml
-          find stats -name 'stats.xml' -print0 | sort -z | xargs -0 python ruby/scripts/merge_stats.py --output ql/ql/src/ql.dbscheme.stats --normalise ql_tokeninfo
-      - uses: actions/upload-artifact@v3
-        with:
-          name: ql.dbscheme.stats
-          path: ql/ql/src/ql.dbscheme.stats

.github/workflows/ql-for-ql-tests.yml

@@ -1,54 +0,0 @@
-name: Run QL for QL Tests
-
-on:
-  push:
-    branches: [main]
-    paths:
-      - "ql/**"
-      - codeql-workspace.yml
-  pull_request:
-    branches: [main]
-    paths:
-      - "ql/**"
-      - codeql-workspace.yml
-
-env:
-  CARGO_TERM_COLOR: always
-
-jobs:
-  qltest:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-      - name: Find codeql
-        id: find-codeql
-        uses: github/codeql-action/init@aa93aea877e5fb8841bcb1193f672abf6e9f2980
-        with:
-          languages: javascript # does not matter
-      - uses: actions/cache@v3
-        with:
-          path: |
-            ~/.cargo/registry
-            ~/.cargo/git
-            ql/target
-          key: ${{ runner.os }}-qltest-cargo-${{ hashFiles('ql/**/Cargo.lock') }}
-      - name: Build extractor
-        run: |
-          cd ql;
-          codeqlpath=$(dirname ${{ steps.find-codeql.outputs.codeql-path }});
-          env "PATH=$PATH:$codeqlpath" ./scripts/create-extractor-pack.sh
-      - name: Run QL tests
-        run: |
-          "${CODEQL}" test run --check-databases --check-unused-labels --check-repeated-labels --check-redefined-labels --check-use-before-definition --search-path "${{ github.workspace }}/ql/extractor-pack" --consistency-queries ql/ql/consistency-queries ql/ql/test
-        env:
-          CODEQL: ${{ steps.find-codeql.outputs.codeql-path }}
-      - name: Check QL formatting
-        run: |
-          find ql/ql "(" -name "*.ql" -or -name "*.qll" ")" -print0 | xargs -0 "${CODEQL}" query format --check-only
-        env:
-          CODEQL: ${{ steps.find-codeql.outputs.codeql-path }}
-      - name: Check QL compilation
-        run: |
-          "${CODEQL}" query compile --check-only --threads=4 --warnings=error --search-path "${{ github.workspace }}/ql/extractor-pack" "ql/ql/src" "ql/ql/examples"
-        env:
-          CODEQL: ${{ steps.find-codeql.outputs.codeql-path }}

.github/workflows/query-list.yml

@@ -5,12 +5,9 @@ on:
     branches:
      - main
      - 'rc/**'
-    tags:
-     - 'codeql-cli/*'
   pull_request:
     paths:
       - '.github/workflows/query-list.yml'
-      - '.github/actions/fetch-codeql/action.yml'
       - 'misc/scripts/generate-code-scanning-query-list.py'
 
 jobs:
@@ -20,21 +17,33 @@ jobs:
 
     steps:
     - name: Clone self (github/codeql)
-      uses: actions/checkout@v3
+      uses: actions/checkout@v2
       with:
         path: codeql 
+    - name: Clone github/codeql-go
+      uses: actions/checkout@v2
+      with:
+        repository: 'github/codeql-go'
+        path: codeql-go
     - name: Set up Python 3.8
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v2
       with:
         python-version: 3.8
     - name: Download CodeQL CLI
-      # Look under the `codeql` directory, as this is where we checked out the `github/codeql` repo
-      uses: ./codeql/.github/actions/fetch-codeql
+      uses: dsaltares/fetch-gh-release-asset@aa37ae5c44d3c9820bc12fe675e8670ecd93bd1c
+      with:
+        repo: "github/codeql-cli-binaries"
+        version: "latest"
+        file: "codeql-linux64.zip"
+        token: ${{ secrets.GITHUB_TOKEN }}
+    - name: Unzip CodeQL CLI
+      run: unzip -d codeql-cli codeql-linux64.zip
     - name: Build code scanning query list
       run: |
-        python codeql/misc/scripts/generate-code-scanning-query-list.py > code-scanning-query-list.csv
+        PATH="$PATH:codeql-cli/codeql" python codeql/misc/scripts/generate-code-scanning-query-list.py > code-scanning-query-list.csv
     - name: Upload code scanning query list
-      uses: actions/upload-artifact@v3
+      uses: actions/upload-artifact@v2
       with:
         name: code-scanning-query-list
         path: code-scanning-query-list.csv
+    

.github/workflows/ruby-build.yml

@@ -1,219 +0,0 @@
-name: "Ruby: Build"
-
-on:
-  push:
-    paths:
-      - "ruby/**"
-      - .github/workflows/ruby-build.yml
-      - .github/actions/fetch-codeql/action.yml
-      - codeql-workspace.yml
-    branches:
-      - main
-      - "rc/*"
-  pull_request:
-    paths:
-      - "ruby/**"
-      - .github/workflows/ruby-build.yml
-      - .github/actions/fetch-codeql/action.yml
-      - codeql-workspace.yml
-    branches:
-      - main
-      - "rc/*"
-  workflow_dispatch:
-    inputs:
-      tag:
-        description: "Version tag to create"
-        required: false
-
-env:
-  CARGO_TERM_COLOR: always
-
-defaults:
-  run:
-    working-directory: ruby
-
-jobs:
-  build:
-    strategy:
-      fail-fast: false
-      matrix:
-        os: [ubuntu-latest, macos-latest, windows-latest]
-
-    runs-on: ${{ matrix.os }}
-
-    steps:
-      - uses: actions/checkout@v3
-      - name: Install GNU tar
-        if: runner.os == 'macOS'
-        run: |
-          brew install gnu-tar
-          echo "/usr/local/opt/gnu-tar/libexec/gnubin" >> $GITHUB_PATH
-      - uses: actions/cache@v3
-        with:
-          path: |
-            ~/.cargo/registry
-            ~/.cargo/git
-            ruby/target
-          key: ${{ runner.os }}-ruby-rust-cargo-${{ hashFiles('ruby/rust-toolchain.toml', 'ruby/**/Cargo.lock') }}
-      - name: Check formatting
-        run: cargo fmt --all -- --check
-      - name: Build
-        run: cargo build --verbose
-      - name: Run tests
-        run: cargo test --verbose
-      - name: Release build
-        run: cargo build --release
-      - name: Generate dbscheme
-        if: ${{ matrix.os == 'ubuntu-latest' }}
-        run: target/release/ruby-generator --dbscheme ql/lib/ruby.dbscheme --library ql/lib/codeql/ruby/ast/internal/TreeSitter.qll
-      - uses: actions/upload-artifact@v3
-        if: ${{ matrix.os == 'ubuntu-latest' }}
-        with:
-          name: ruby.dbscheme
-          path: ruby/ql/lib/ruby.dbscheme
-      - uses: actions/upload-artifact@v3
-        if: ${{ matrix.os == 'ubuntu-latest' }}
-        with:
-          name: TreeSitter.qll
-          path: ruby/ql/lib/codeql/ruby/ast/internal/TreeSitter.qll
-      - uses: actions/upload-artifact@v3
-        with:
-          name: extractor-${{ matrix.os }}
-          path: |
-            ruby/target/release/ruby-autobuilder
-            ruby/target/release/ruby-autobuilder.exe
-            ruby/target/release/ruby-extractor
-            ruby/target/release/ruby-extractor.exe
-          retention-days: 1
-  compile-queries:
-    runs-on: ubuntu-latest
-    env:
-      CODEQL_THREADS: 4 # TODO: remove this once it's set by the CLI
-    steps:
-      - uses: actions/checkout@v3
-      - name: Fetch CodeQL
-        uses: ./.github/actions/fetch-codeql
-      - name: Build Query Pack
-        run: |
-          codeql pack create ql/lib --output target/packs
-          codeql pack install ql/src
-          codeql pack create ql/src --output target/packs
-          PACK_FOLDER=$(readlink -f target/packs/codeql/ruby-queries/*)
-          codeql generate query-help --format=sarifv2.1.0 --output="${PACK_FOLDER}/rules.sarif" ql/src
-          (cd ql/src; find queries \( -name '*.qhelp' -o -name '*.rb' -o -name '*.erb' \) -exec bash -c 'mkdir -p "'"${PACK_FOLDER}"'/$(dirname "{}")"' \; -exec cp "{}" "${PACK_FOLDER}/{}" \;)
-      - uses: actions/upload-artifact@v3
-        with:
-          name: codeql-ruby-queries
-          path: |
-            ruby/target/packs/*
-          retention-days: 1
-
-  package:
-    runs-on: ubuntu-latest
-    needs: [build, compile-queries]
-    steps:
-      - uses: actions/checkout@v3
-      - uses: actions/download-artifact@v3
-        with:
-          name: ruby.dbscheme
-          path: ruby/ruby
-      - uses: actions/download-artifact@v3
-        with:
-          name: extractor-ubuntu-latest
-          path: ruby/linux64
-      - uses: actions/download-artifact@v3
-        with:
-          name: extractor-windows-latest
-          path: ruby/win64
-      - uses: actions/download-artifact@v3
-        with:
-          name: extractor-macos-latest
-          path: ruby/osx64
-      - run: |
-          mkdir -p ruby
-          cp -r codeql-extractor.yml tools ql/lib/ruby.dbscheme.stats ruby/
-          mkdir -p ruby/tools/{linux64,osx64,win64}
-          cp linux64/ruby-autobuilder ruby/tools/linux64/autobuilder
-          cp osx64/ruby-autobuilder ruby/tools/osx64/autobuilder
-          cp win64/ruby-autobuilder.exe ruby/tools/win64/autobuilder.exe
-          cp linux64/ruby-extractor ruby/tools/linux64/extractor
-          cp osx64/ruby-extractor ruby/tools/osx64/extractor
-          cp win64/ruby-extractor.exe ruby/tools/win64/extractor.exe
-          chmod +x ruby/tools/{linux64,osx64}/{autobuilder,extractor}
-          zip -rq codeql-ruby.zip ruby
-      - uses: actions/upload-artifact@v3
-        with:
-          name: codeql-ruby-pack
-          path: ruby/codeql-ruby.zip
-          retention-days: 1
-      - uses: actions/download-artifact@v3
-        with:
-          name: codeql-ruby-queries
-          path: ruby/qlpacks
-      - run: |
-          echo '{
-            "provide": [
-            "ruby/codeql-extractor.yml",
-            "qlpacks/*/*/*/qlpack.yml"
-            ]
-          }' > .codeqlmanifest.json
-          zip -rq codeql-ruby-bundle.zip .codeqlmanifest.json ruby qlpacks
-      - uses: actions/upload-artifact@v3
-        with:
-          name: codeql-ruby-bundle
-          path: ruby/codeql-ruby-bundle.zip
-          retention-days: 1
-
-  test:
-    defaults:
-      run:
-        working-directory: ${{ github.workspace }}
-    strategy:
-      fail-fast: false
-      matrix:
-        os: [ubuntu-latest, macos-latest, windows-latest]
-
-    runs-on: ${{ matrix.os }}
-    needs: [package]
-    steps:
-      - uses: actions/checkout@v3
-      - name: Fetch CodeQL
-        uses: ./.github/actions/fetch-codeql
-
-      - uses: actions/checkout@v3
-        with:
-          repository: Shopify/example-ruby-app
-          ref: 67a0decc5eb550f3a9228eda53925c3afd40dfe9
-
-      - name: Download Ruby bundle
-        uses: actions/download-artifact@v3
-        with:
-          name: codeql-ruby-bundle
-          path: ${{ runner.temp }}
-      - name: Unzip Ruby bundle
-        shell: bash
-        run: unzip -q -d "${{ runner.temp }}/ruby-bundle" "${{ runner.temp }}/codeql-ruby-bundle.zip"
-      - name: Prepare test files
-        shell: bash
-        run: |
-          echo "import ruby select count(File f)" > "test.ql"
-          echo "| 4 |" > "test.expected"
-          echo 'name: sample-tests
-          version: 0.0.0
-          dependencies:
-            codeql/ruby-all: 0.0.1
-          extractor: ruby
-          tests: .
-          ' > qlpack.yml
-      - name: Run QL test
-        shell: bash
-        run: |
-          codeql test run --search-path "${{ runner.temp }}/ruby-bundle" --additional-packs "${{ runner.temp }}/ruby-bundle" .
-      - name: Create database
-        shell: bash
-        run: |
-          codeql database create --search-path "${{ runner.temp }}/ruby-bundle" --language ruby --source-root . ../database
-      - name: Analyze database
-        shell: bash
-        run: |
-          codeql database analyze --search-path "${{ runner.temp }}/ruby-bundle" --format=sarifv2.1.0 --output=out.sarif ../database ruby-code-scanning.qls

.github/workflows/ruby-dataset-measure.yml

@@ -1,73 +0,0 @@
-name: "Ruby: Collect database stats"
-
-on:
-  push:
-    branches:
-      - main
-      - "rc/*"
-    paths:
-      - ruby/ql/lib/ruby.dbscheme
-      - .github/workflows/ruby-dataset-measure.yml
-  pull_request:
-    branches:
-      - main
-      - "rc/*"
-    paths:
-      - ruby/ql/lib/ruby.dbscheme
-      - .github/workflows/ruby-dataset-measure.yml
-  workflow_dispatch:
-
-jobs:
-  measure:
-    env:
-      CODEQL_THREADS: 4 # TODO: remove this once it's set by the CLI
-    strategy:
-      fail-fast: false
-      matrix:
-        repo: [rails/rails, discourse/discourse, spree/spree, ruby/ruby]
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-
-      - uses: ./.github/actions/fetch-codeql
-
-      - uses: ./ruby/actions/create-extractor-pack
-
-      - name: Checkout ${{ matrix.repo }}
-        uses: actions/checkout@v3
-        with:
-          repository: ${{ matrix.repo }}
-          path: ${{ github.workspace }}/repo
-      - name: Create database
-        run: |
-          codeql database create \
-            --search-path "${{ github.workspace }}/ruby/extractor-pack" \
-            --threads 4 \
-            --language ruby --source-root "${{ github.workspace }}/repo" \
-            "${{ runner.temp }}/database"
-      - name: Measure database
-        run: |
-          mkdir -p "stats/${{ matrix.repo }}"
-          codeql dataset measure --threads 4 --output "stats/${{ matrix.repo }}/stats.xml" "${{ runner.temp }}/database/db-ruby"
-      - uses: actions/upload-artifact@v3
-        with:
-          name: measurements
-          path: stats
-          retention-days: 1
-
-  merge:
-    runs-on: ubuntu-latest
-    needs: measure
-    steps:
-      - uses: actions/checkout@v3
-      - uses: actions/download-artifact@v3
-        with:
-          name: measurements
-          path: stats
-      - run: |
-          python -m pip install --user lxml
-          find stats -name 'stats.xml' | sort | xargs python ruby/scripts/merge_stats.py --output ruby/ql/lib/ruby.dbscheme.stats --normalise ruby_tokeninfo
-      - uses: actions/upload-artifact@v3
-        with:
-          name: ruby.dbscheme.stats
-          path: ruby/ql/lib/ruby.dbscheme.stats

.github/workflows/ruby-qltest.yml

@@ -1,81 +0,0 @@
-name: "Ruby: Run QL Tests"
-
-on:
-  push:
-    paths:
-      - "ruby/**"
-      - .github/workflows/ruby-qltest.yml
-      - .github/actions/fetch-codeql/action.yml
-      - codeql-workspace.yml
-    branches:
-      - main
-      - "rc/*"
-  pull_request:
-    paths:
-      - "ruby/**"
-      - .github/workflows/ruby-qltest.yml
-      - .github/actions/fetch-codeql/action.yml
-      - codeql-workspace.yml
-    branches:
-      - main
-      - "rc/*"
-
-env:
-  CARGO_TERM_COLOR: always
-
-defaults:
-  run:
-    working-directory: ruby
-
-jobs:
-  qlformat:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-      - uses: ./.github/actions/fetch-codeql
-      - name: Check QL formatting
-        run: find ql "(" -name "*.ql" -or -name "*.qll" ")" -print0 | xargs -0 codeql query format --check-only
-  qlcompile:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-      - uses: ./.github/actions/fetch-codeql
-      - name: Check QL compilation
-        run: |
-          codeql query compile --check-only --threads=0 --ram 5000 --warnings=error "ql/src" "ql/examples"
-        env:
-          GITHUB_TOKEN: ${{ github.token }}
-  qlupgrade:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-      - uses: ./.github/actions/fetch-codeql
-      - name: Check DB upgrade scripts
-        run: |
-          echo >empty.trap
-          codeql dataset import -S ql/lib/upgrades/initial/ruby.dbscheme testdb empty.trap
-          codeql dataset upgrade testdb --additional-packs ql/lib
-          diff -q testdb/ruby.dbscheme ql/lib/ruby.dbscheme
-      - name: Check DB downgrade scripts
-        run: |
-          echo >empty.trap
-          rm -rf testdb; codeql dataset import -S ql/lib/ruby.dbscheme testdb empty.trap
-          codeql resolve upgrades --format=lines --allow-downgrades --additional-packs downgrades \
-           --dbscheme=ql/lib/ruby.dbscheme --target-dbscheme=downgrades/initial/ruby.dbscheme |
-           xargs codeql execute upgrades testdb
-          diff -q testdb/ruby.dbscheme downgrades/initial/ruby.dbscheme
-  qltest:
-    runs-on: ubuntu-latest
-    strategy:
-      fail-fast: false
-      matrix:
-        slice: ["1/2", "2/2"]
-    steps:
-      - uses: actions/checkout@v3
-      - uses: ./.github/actions/fetch-codeql
-      - uses: ./ruby/actions/create-extractor-pack
-      - name: Run QL tests
-        run: |
-          codeql test run --threads=0 --ram 5000 --slice ${{ matrix.slice }} --search-path "${{ github.workspace }}/ruby/extractor-pack" --check-databases --check-unused-labels --check-repeated-labels --check-redefined-labels --check-use-before-definition --consistency-queries ql/consistency-queries ql/test
-        env:
-          GITHUB_TOKEN: ${{ github.token }}

.github/workflows/swift-codegen.yml

@@ -1,37 +0,0 @@
-name: "Swift: Check code generation"
-
-on:
-  pull_request:
-    paths:
-      - "swift/**"
-      - .github/workflows/swift-codegen.yml
-      - .github/actions/fetch-codeql/action.yml
-    branches:
-      - main
-
-jobs:
-  codegen:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-      - uses: ./.github/actions/fetch-codeql
-      - uses: bazelbuild/setup-bazelisk@v2
-      - uses: actions/setup-python@v3
-      - uses: pre-commit/action@v3.0.0
-        name: Check that python code is properly formatted
-        with:
-          extra_args: autopep8 --all-files
-      - name: Run unit tests
-        run: |
-          bazel test //swift/codegen/test --test_output=errors
-      - uses: pre-commit/action@v3.0.0
-        name: Check that QL generated code was checked in
-        with:
-          extra_args: swift-codegen --all-files
-      - name: Generate C++ files
-        run: |
-          bazel run //swift/codegen:codegen -- --generate=trap,cpp --cpp-output=$PWD/swift-generated-cpp-files
-      - uses: actions/upload-artifact@v3
-        with:
-          name: swift-generated-cpp-files
-          path: swift-generated-cpp-files/**

.github/workflows/swift-integration-tests.yml

@@ -1,35 +0,0 @@
-name: "Swift: Run Integration Tests"
-
-on:
-  pull_request:
-    paths:
-      - "swift/**"
-      - .github/workflows/swift-integration-tests.yml
-      - .github/actions/fetch-codeql/action.yml
-      - codeql-workspace.yml
-    branches:
-      - main
-defaults:
-  run:
-    working-directory: swift
-
-jobs:
-  integration-tests:
-    runs-on: ${{ matrix.os }}
-    strategy:
-      fail-fast: false
-      matrix:
-        os:
-          - ubuntu-20.04
-#          - macos-latest  TODO
-    steps:
-      - uses: actions/checkout@v3
-      - uses: ./.github/actions/fetch-codeql
-      - uses: bazelbuild/setup-bazelisk@v2
-      - uses: actions/setup-python@v3
-      - name: Build Swift extractor
-        run: |
-          bazel run //swift:create-extractor-pack
-      - name: Run integration tests
-        run: |
-          python integration-tests/runner.py

.github/workflows/swift-qltest.yml

@@ -1,41 +0,0 @@
-name: "Swift: Run QL Tests"
-
-on:
-  pull_request:
-    paths:
-      - "swift/**"
-      - .github/workflows/swift-qltest.yml
-      - .github/actions/fetch-codeql/action.yml
-      - codeql-workspace.yml
-    branches:
-      - main
-defaults:
-  run:
-    working-directory: swift
-
-jobs:
-  qlformat:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-      - uses: ./.github/actions/fetch-codeql
-      - name: Check QL formatting
-        run: find ql "(" -name "*.ql" -or -name "*.qll" ")" -print0 | xargs -0 codeql query format --check-only
-  qltest:
-    runs-on: ${{ matrix.os }}
-    strategy:
-      fail-fast: false
-      matrix:
-        os : [ubuntu-20.04, macos-latest]
-    steps:
-      - uses: actions/checkout@v3
-      - uses: ./.github/actions/fetch-codeql
-      - uses: bazelbuild/setup-bazelisk@v2
-      - name: Build Swift extractor
-        run: |
-          bazel run //swift:create-extractor-pack
-      - name: Run QL tests
-        run: |
-          codeql test run --threads=0 --ram 5000 --search-path "${{ github.workspace }}/swift/extractor-pack" --check-databases --check-unused-labels --check-repeated-labels --check-redefined-labels --check-use-before-definition ql/test
-        env:
-          GITHUB_TOKEN: ${{ github.token }}

.github/workflows/sync-files.yml

@@ -1,20 +0,0 @@
-name: Check synchronized files
-
-on:
-  push:
-    branches:
-      - main
-      - 'rc/*'
-  pull_request:
-    branches:
-      - main
-      - 'rc/*'
-
-jobs:
-  sync:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-      - name: Check synchronized files
-        run: python config/sync-files.py
-

.github/workflows/validate-change-notes.yml

@@ -1,31 +0,0 @@
-name: Validate change notes
-
-on:
-  push:
-    paths:
-      - "*/ql/*/change-notes/**/*"
-      - ".github/workflows/validate-change-notes.yml"
-      - ".github/actions/fetch-codeql/action.yml"
-    branches:
-      - main
-      - "rc/*"
-  pull_request:
-    paths:
-      - "*/ql/*/change-notes/**/*"
-      - ".github/workflows/validate-change-notes.yml"
-      - ".github/actions/fetch-codeql/action.yml"
-
-jobs:
-  check-change-note:
-    runs-on: ubuntu-latest
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@v3
-
-      - name: Setup CodeQL
-        uses: ./.github/actions/fetch-codeql
-
-      - name: Fail if there are any errors with existing change notes
-
-        run: |
-          codeql pack release --groups cpp,csharp,java,javascript,python,ruby,-examples,-test,-experimental

.gitignore

@@ -9,7 +9,6 @@
 # qltest projects and artifacts
 */ql/test/**/*.testproj
 */ql/test/**/*.actual
-*/ql/test/**/go.sum
 
 # Visual studio temporaries, except a file used by QL4VS
 .vs/*
@@ -18,46 +17,10 @@
 # Byte-compiled python files
 *.pyc
 
-# python virtual environment folder
+# python virtual environment folder 
 .venv/
 
-# binary files created by pytest-cov
-.coverage
-
 # It's useful (though not required) to be able to unpack codeql in the ql checkout itself
 /codeql/
 
 csharp/extractor/Semmle.Extraction.CSharp.Driver/Properties/launchSettings.json
-
-# Avoid committing cached package components
-.codeql
-
-# Compiled class file
-*.class
-
-# links created by bazel
-/bazel-*
-
-# local bazel options
-/local.bazelrc
-
-# CLion project files
-/.clwb
-
-# Go build artifacts
-go/build/*
-
-# Go binaries
-go/tools/bin
-go/tools/linux64
-go/tools/osx64
-go/tools/win64
-go/tools/tokenizer.jar
-go/main
-
-# node_modules folders except in the JS test suite
-node_modules/
-!/javascript/ql/test/**/node_modules/
-
-# Temporary folders for working with generated models
-.model-temp

.lgtm.yml

@@ -6,7 +6,6 @@ path_classifiers:
   test:
   - csharp/ql/src
   - csharp/ql/test
-  - go/ql/test
   - javascript/extractor/parser-tests
   - javascript/extractor/tests
   - javascript/ql/src
@@ -14,9 +13,6 @@ path_classifiers:
   - python/ql/src
   - python/ql/test
 
-  example:
-  - go/ql/src
-
 queries:
   - include: "*"
 

.pre-commit-config.yaml

@@ -1,57 +0,0 @@
-# See https://pre-commit.com for more information
-# See https://pre-commit.com/hooks.html for more hooks
-repos:
-  - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v3.2.0
-    hooks:
-      - id: trailing-whitespace
-        exclude: /test/.*$(?<!\.ql)(?<!\.qll)(?<!\.qlref)
-      - id: end-of-file-fixer
-        exclude: /test/.*$(?<!\.ql)(?<!\.qll)(?<!\.qlref)
-
-  - repo: https://github.com/pre-commit/mirrors-clang-format
-    rev: v13.0.1
-    hooks:
-      - id: clang-format
-        files: ^swift/.*\.(h|c|cpp)$
-
-  - repo: https://github.com/pre-commit/mirrors-autopep8
-    rev: v1.6.0
-    hooks:
-      - id: autopep8
-        files: ^swift/codegen/.*\.py
-
-  - repo: local
-    hooks:
-      - id: codeql-format
-        name: Fix QL file formatting
-        files: \.qll?$
-        language: system
-        entry: codeql query format --in-place
-
-      - id: sync-files
-        name: Fix files required to be identical
-        files: \.(qll?|qhelp|swift)$
-        language: system
-        entry: python3 config/sync-files.py --latest
-        pass_filenames: false
-
-      - id: qhelp
-        name: Check query help generation
-        files: \.qhelp$
-        language: system
-        entry: python3 misc/scripts/check-qhelp.py
-
-      - id: swift-codegen
-        name: Run Swift checked in code generation
-        files: ^swift/(codegen/|.*/generated/|ql/lib/(swift\.dbscheme$|codeql/swift/elements))
-        language: system
-        entry: bazel run //swift/codegen -- --quiet
-        pass_filenames: false
-
-      - id: swift-codegen-unit-tests
-        name: Run Swift code generation unit tests
-        files: ^swift/codegen/.*\.py$
-        language: system
-        entry: bazel test //swift/codegen/test
-        pass_filenames: false

CODEOWNERS

@@ -1,16 +1,15 @@
 /cpp/ @github/codeql-c-analysis
 /csharp/ @github/codeql-csharp
-/go/ @github/codeql-go
 /java/ @github/codeql-java
 /javascript/ @github/codeql-javascript
 /python/ @github/codeql-python
-/ruby/ @github/codeql-ruby
-/swift/ @github/codeql-c
-/java/kotlin-extractor/ @github/codeql-kotlin
-/java/kotlin-explorer/ @github/codeql-kotlin
 
-# ML-powered queries
-/javascript/ql/experimental/adaptivethreatmodeling/ @github/codeql-ml-powered-queries-reviewers
+# Make @xcorail (GitHub Security Lab) a code owner for experimental queries so he gets pinged when we promote a query out of experimental
+/cpp/**/experimental/**/* @github/codeql-c-analysis @xcorail
+/csharp/**/experimental/**/* @github/codeql-csharp @xcorail
+/java/**/experimental/**/* @github/codeql-java @xcorail
+/javascript/**/experimental/**/* @github/codeql-javascript @xcorail
+/python/**/experimental/**/* @github/codeql-python @xcorail
 
 # Notify members of codeql-go about PRs to the shared data-flow library files
 /java/ql/src/semmle/code/java/dataflow/internal/DataFlowImpl.qll @github/codeql-java @github/codeql-go
@@ -18,28 +17,3 @@
 /java/ql/src/semmle/code/java/dataflow/internal/DataFlowImplCommon.qll @github/codeql-java @github/codeql-go
 /java/ql/src/semmle/code/java/dataflow/internal/tainttracking1/TaintTrackingImpl.qll @github/codeql-java @github/codeql-go
 /java/ql/src/semmle/code/java/dataflow/internal/tainttracking2/TaintTrackingImpl.qll @github/codeql-java @github/codeql-go
-
-# CodeQL tools and associated docs
-/docs/codeql-cli/ @github/codeql-cli-reviewers
-/docs/codeql-for-visual-studio-code/ @github/codeql-vscode-reviewers
-/docs/ql-language-reference/ @github/codeql-frontend-reviewers
-/docs/query-*-style-guide.md @github/codeql-analysis-reviewers
-
-# QL for QL reviewers
-/ql/ @github/codeql-ql-for-ql-reviewers
-
-# Bazel (excluding BUILD.bazel files)
-WORKSPACE.bazel @github/codeql-ci-reviewers
-**/*.bzl @github/codeql-ci-reviewers
-
-# Documentation etc
-/*.md @github/code-scanning-product
-/LICENSE @github/code-scanning-product
-
-# Workflows
-/.github/workflows/ @github/codeql-ci-reviewers
-/.github/workflows/go-* @github/codeql-go
-/.github/workflows/js-ml-tests.yml @github/codeql-ml-powered-queries-reviewers
-/.github/workflows/ql-for-ql-* @github/codeql-ql-for-ql-reviewers
-/.github/workflows/ruby-* @github/codeql-ruby
-/.github/workflows/swift-* @github/codeql-c

CONTRIBUTING.md

@@ -2,11 +2,8 @@
 
 We welcome contributions to our CodeQL libraries and queries. Got an idea for a new check, or how to improve an existing query? Then please go ahead and open a pull request! Contributions to this project are [released](https://help.github.com/articles/github-terms-of-service/#6-contributions-under-repository-license) to the public under the [project's open source license](LICENSE).
 
-There is lots of useful documentation to help you write queries, ranging from information about query file structure to tutorials for specific target languages. For more information on the documentation available, see [CodeQL queries](https://codeql.github.com/docs/writing-codeql-queries/codeql-queries) on [codeql.github.com](https://codeql.github.com).
+There is lots of useful documentation to help you write queries, ranging from information about query file structure to tutorials for specific target languages. For more information on the documentation available, see [CodeQL queries](https://help.semmle.com/QL/learn-ql/writing-queries/writing-queries.html) on [help.semmle.com](https://help.semmle.com).
 
-## Change notes
-
-Any nontrivial user-visible change to a query pack or library pack should have a change note. For details on how to add a change note for your change, see [this guide](docs/change-notes.md).
 
 ## Submitting a new experimental query
 
@@ -14,14 +11,13 @@ If you have an idea for a query that you would like to share with other CodeQL u
 
 1. **Directory structure**
 
-    There are six language-specific query directories in this repository:
+    There are five language-specific query directories in this repository:
 
       * C/C++: `cpp/ql/src`
       * C#: `csharp/ql/src`
       * Java: `java/ql/src`
       * JavaScript: `javascript/ql/src`
       * Python: `python/ql/src`
-      * Ruby: `ruby/ql/src`
 
     Each language-specific directory contains further subdirectories that group queries based on their `@tags` or purpose.
     - Experimental queries and libraries are stored in the `experimental` subdirectory within each language-specific directory in the [CodeQL repository](https://github.com/github/codeql). For example, experimental Java queries and libraries are stored in `java/ql/src/experimental` and any corresponding tests in `java/ql/test/experimental`.
@@ -36,17 +32,13 @@ If you have an idea for a query that you would like to share with other CodeQL u
 
     For details, see the [guide on query metadata](docs/query-metadata-style-guide.md).
 
-    Make sure the `select` statement is compatible with the query `@kind`. See [About CodeQL queries](https://codeql.github.com/docs/writing-codeql-queries/about-codeql-queries/#select-clause) on codeql.github.com.
+    Make sure the `select` statement is compatible with the query `@kind`. See [About CodeQL queries](https://help.semmle.com/QL/learn-ql/writing-queries/introduction-to-queries.html#select-clause) on help.semmle.com.
 
 3. **Formatting**
 
-    - The queries and libraries must be autoformatted, for example using the "Format Document" command in [CodeQL for Visual Studio Code](https://codeql.github.com/docs/codeql-for-visual-studio-code/about-codeql-for-visual-studio-code).
+    - The queries and libraries must be autoformatted, for example using the "Format Document" command in [CodeQL for Visual Studio Code](https://help.semmle.com/codeql/codeql-for-vscode/procedures/about-codeql-for-vscode.html).
 
-    If you prefer, you can either:
-    1. install the [pre-commit framework](https://pre-commit.com/) and install the configured hooks on this repo via `pre-commit install`, or
-    2. use this [pre-commit hook](misc/scripts/pre-commit) that automatically checks whether your files are correctly formatted.
-
-    See the [pre-commit hook installation guide](docs/pre-commit-hook-setup.md) for instructions on the two approaches.
+    If you prefer, you can use this [pre-commit hook](misc/scripts/pre-commit) that automatically checks whether your files are correctly formatted. See the [pre-commit hook installation guide](docs/pre-commit-hook-setup.md) for instructions on how to install the hook.
 
 4. **Compilation**
 
@@ -67,10 +59,6 @@ After the experimental query is merged, we welcome pull requests to improve it.
 
 ## Using your personal data
 
-If you contribute to this project, we will record your name and email address (as provided by you with your contributions) as part of the code repositories, which are public. We might also use this information to contact you in relation to your contributions, as well as in the normal course of software development. We also store records of CLA agreements signed in the past, but no longer require contributors to sign a CLA. Under GDPR legislation, we do this on the basis of our legitimate interest in creating the CodeQL product.
+If you contribute to this project, we will record your name and email address (as provided by you with your contributions) as part of the code repositories, which are public. We might also use this information to contact you in relation to your contributions, as well as in the normal course of software development. We also store records of CLA agreements signed in the past, but no longer require contributors to sign a CLA. Under GDPR legislation, we do this on the basis of our legitimate interest in creating the CodeQL product. 
 
 Please do get in touch (privacy@github.com) if you have any questions about this or our data protection policies.
-
-## Bazel
-Please notice that any bazel targets and definitions in this repository are currently experimental
-and for internal use only.

README.md

@@ -1,11 +1,11 @@
 # CodeQL
 
-This open source repository contains the standard CodeQL libraries and queries that power [GitHub Advanced Security](https://github.com/features/security/code) and the other application security products that [GitHub](https://github.com/features/security/) makes available to its customers worldwide.
+This open source repository contains the standard CodeQL libraries and queries that power [LGTM](https://lgtm.com) and the other CodeQL products that [GitHub](https://github.com) makes available to its customers worldwide. For the queries, libraries, and extractor that power Go analysis, visit the [CodeQL for Go repository](https://github.com/github/codeql-go).
 
 ## How do I learn CodeQL and run queries?
 
-There is [extensive documentation](https://codeql.github.com/docs/) on getting started with writing CodeQL.
-You can use the [CodeQL for Visual Studio Code](https://codeql.github.com/docs/codeql-for-visual-studio-code/) extension or the [interactive query console](https://lgtm.com/help/lgtm/using-query-console) on LGTM.com (Semmle Legacy product) to try out your queries on any open source project that's currently being analyzed.
+There is [extensive documentation](https://help.semmle.com/QL/learn-ql/) on getting started with writing CodeQL.
+You can use the [interactive query console](https://lgtm.com/help/lgtm/using-query-console) on LGTM.com or the [CodeQL for Visual Studio Code](https://help.semmle.com/codeql/codeql-for-vscode.html) extension to try out your queries on any open source project that's currently being analyzed.
 
 ## Contributing
 
@@ -15,8 +15,6 @@ We welcome contributions to our standard library and standard checks. Do you hav
 
 The code in this repository is licensed under the [MIT License](LICENSE) by [GitHub](https://github.com).
 
-The CodeQL CLI (including the CodeQL engine) is hosted in a [different repository](https://github.com/github/codeql-cli-binaries) and is [licensed separately](https://github.com/github/codeql-cli-binaries/blob/main/LICENSE.md). If you'd like to use the CodeQL CLI to analyze closed-source code, you will need a separate commercial license; please [contact us](https://github.com/enterprise/contact) for further help.
-
 ## Visual Studio Code integration
 
 If you use Visual Studio Code to work in this repository, there are a few integration features to make development easier.

WORKSPACE.bazel

@@ -1,12 +0,0 @@
-# Please notice that any bazel targets and definitions in this repository are currently experimental
-# and for internal use only.
-
-workspace(name = "codeql")
-
-load("//misc/bazel:workspace.bzl", "codeql_workspace")
-
-codeql_workspace()
-
-load("//misc/bazel:workspace_deps.bzl", "codeql_workspace_deps")
-
-codeql_workspace_deps()

codeql-workspace.yml

@@ -1,32 +0,0 @@
-provide:
-  - "*/ql/src/qlpack.yml"
-  - "*/ql/lib/qlpack.yml"
-  - "*/ql/test/qlpack.yml"
-  - "*/ql/examples/qlpack.yml"
-  - "*/ql/consistency-queries/qlpack.yml"
-  - "cpp/ql/test/query-tests/Security/CWE/CWE-190/semmle/tainted/qlpack.yml"
-  - "go/ql/config/legacy-support/qlpack.yml"
-  - "go/build/codeql-extractor-go/codeql-extractor.yml"
-  - "javascript/ql/experimental/adaptivethreatmodeling/lib/qlpack.yml"
-  # This pack is explicitly excluded from the workspace since most users
-  # will want to use a version of this pack from the package cache. Internal
-  # users can uncomment the following line and place a custom ML model
-  # in the corresponding pack to test a custom ML model within their local
-  # checkout.
-  # - "javascript/ql/experimental/adaptivethreatmodeling/model/qlpack.yml"
-  - "javascript/ql/experimental/adaptivethreatmodeling/modelbuilding/qlpack.yml"
-  - "javascript/ql/experimental/adaptivethreatmodeling/src/qlpack.yml"
-  - "csharp/ql/campaigns/Solorigate/lib/qlpack.yml"
-  - "csharp/ql/campaigns/Solorigate/src/qlpack.yml"
-  - "csharp/ql/campaigns/Solorigate/test/qlpack.yml"
-  - "misc/legacy-support/*/qlpack.yml"
-  - "misc/suite-helpers/qlpack.yml"
-  - "ruby/extractor-pack/codeql-extractor.yml"
-  - "swift/extractor-pack/codeql-extractor.yml"
-  - "ql/extractor-pack/codeql-extractor.ym"
-
-versionPolicies:
-  default:
-    requireChangeNotes: true
-    committedPrereleaseSuffix: dev
-    committedVersion: nextPatchRelease

config/blame-deprecations.mjs

@@ -1,58 +0,0 @@
-import fs from "fs";
-import path from "path";
-import cp from "child_process";
-function* walk(dir) {
-  for (const file of fs.readdirSync(dir)) {
-    const filePath = path.join(dir, file);
-    if (fs.statSync(filePath).isDirectory()) {
-      yield* walk(filePath);
-    } else {
-      yield filePath;
-    }
-  }
-}
-
-function* deprecatedFiles(dir) {
-  for (const file of walk(dir)) {
-    if (file.endsWith(".ql") || file.endsWith(".qll")) {
-      const contents = fs.readFileSync(file, "utf8");
-      if (/\sdeprecated\s/.test(contents)) {
-        yield file;
-      }
-    }
-  }
-}
-
-const blameRegExp =
-  /^(\^?\w+)\s.+\s+(\d{4}-\d{2}-\d{2} \d{2}:\d{2}:\d{2} (?:\+|-)\d{4})\s+(\d+)\).*$/;
-
-function* deprecationMessages(dir) {
-  for (const file of deprecatedFiles(dir)) {
-    const blame = cp.execFileSync("git", ["blame", "--", file]);
-    const lines = blame.toString().split("\n");
-    for (let i = 0; i < lines.length; i++) {
-      const line = lines[i];
-      if (line.includes(" deprecated ")) {
-        try {
-          const [_, sha, time, lineNumber] = line.match(blameRegExp);
-          const date = new Date(time);
-          // check if it's within the last 14 months (a year, plus 2 months for safety, in case a PR was delayed)
-          if (date.getTime() >= Date.now() - 14 * 31 * 24 * 60 * 60 * 1000) {
-            continue;
-          }
-          const message = `${file}:${lineNumber} was last updated on ${date.getFullYear()}-${date.getMonth()}-${date.getDate()}`;
-          yield [message, date];
-        } catch (e) {
-          console.log(e);
-          console.log("----");
-          console.log(line);
-          console.log("----");
-          process.exit(0);
-        }
-      }
-    }
-  }
-}
-[...deprecationMessages(".")]
-  .sort((a, b) => a[1].getTime() - b[1].getTime())
-  .forEach((msg) => console.log(msg[0]));

config/identical-files.json

@@ -1,353 +1,323 @@
 {
   "DataFlow Java/C++/C#/Python": [
-    "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl.qll",
-    "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl2.qll",
-    "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl3.qll",
-    "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl4.qll",
-    "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl5.qll",
-    "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl6.qll",
-    "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImplForSerializability.qll",
-    "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImplForOnActivityResult.qll",
-    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImpl.qll",
-    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImpl2.qll",
-    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImpl3.qll",
-    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImpl4.qll",
-    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImplLocal.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl2.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl3.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl4.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImpl.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImpl2.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImpl3.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImpl4.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImpl5.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImplForContentDataFlow.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/DataFlowImpl.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/DataFlowImpl2.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/DataFlowImpl3.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/DataFlowImpl4.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlowImpl.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlowImpl2.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlowImplForLibraries.qll",
-    "swift/ql/lib/codeql/swift/dataflow/internal/DataFlowImpl.qll"
+    "java/ql/src/semmle/code/java/dataflow/internal/DataFlowImpl.qll",
+    "java/ql/src/semmle/code/java/dataflow/internal/DataFlowImpl2.qll",
+    "java/ql/src/semmle/code/java/dataflow/internal/DataFlowImpl3.qll",
+    "java/ql/src/semmle/code/java/dataflow/internal/DataFlowImpl4.qll",
+    "java/ql/src/semmle/code/java/dataflow/internal/DataFlowImpl5.qll",
+    "cpp/ql/src/semmle/code/cpp/dataflow/internal/DataFlowImpl.qll",
+    "cpp/ql/src/semmle/code/cpp/dataflow/internal/DataFlowImpl2.qll",
+    "cpp/ql/src/semmle/code/cpp/dataflow/internal/DataFlowImpl3.qll",
+    "cpp/ql/src/semmle/code/cpp/dataflow/internal/DataFlowImpl4.qll",
+    "cpp/ql/src/semmle/code/cpp/dataflow/internal/DataFlowImplLocal.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl2.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl3.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl4.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/DataFlowImpl.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/DataFlowImpl2.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/DataFlowImpl3.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/DataFlowImpl4.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/DataFlowImpl5.qll",
+    "python/ql/src/semmle/python/dataflow/new/internal/DataFlowImpl.qll",
+    "python/ql/src/semmle/python/dataflow/new/internal/DataFlowImpl2.qll",
+    "python/ql/src/semmle/python/dataflow/new/internal/DataFlowImpl3.qll",
+    "python/ql/src/semmle/python/dataflow/new/internal/DataFlowImpl4.qll"
   ],
   "DataFlow Java/C++/C#/Python Common": [
-    "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImplCommon.qll",
-    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImplCommon.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlowImplCommon.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImplCommon.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/DataFlowImplCommon.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlowImplCommon.qll",
-    "swift/ql/lib/codeql/swift/dataflow/internal/DataFlowImplCommon.qll"
+    "java/ql/src/semmle/code/java/dataflow/internal/DataFlowImplCommon.qll",
+    "cpp/ql/src/semmle/code/cpp/dataflow/internal/DataFlowImplCommon.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/dataflow/internal/DataFlowImplCommon.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/DataFlowImplCommon.qll",
+    "python/ql/src/semmle/python/dataflow/new/internal/DataFlowImplCommon.qll"
   ],
   "TaintTracking::Configuration Java/C++/C#/Python": [
-    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/tainttracking1/TaintTrackingImpl.qll",
-    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/tainttracking2/TaintTrackingImpl.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/tainttracking1/TaintTrackingImpl.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/tainttracking2/TaintTrackingImpl.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/tainttracking3/TaintTrackingImpl.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/tainttracking1/TaintTrackingImpl.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/tainttracking2/TaintTrackingImpl.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/tainttracking3/TaintTrackingImpl.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/tainttracking4/TaintTrackingImpl.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/tainttracking5/TaintTrackingImpl.qll",
-    "java/ql/lib/semmle/code/java/dataflow/internal/tainttracking1/TaintTrackingImpl.qll",
-    "java/ql/lib/semmle/code/java/dataflow/internal/tainttracking2/TaintTrackingImpl.qll",
-    "java/ql/lib/semmle/code/java/dataflow/internal/tainttracking3/TaintTrackingImpl.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/tainttracking1/TaintTrackingImpl.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/tainttracking2/TaintTrackingImpl.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/tainttracking3/TaintTrackingImpl.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/tainttracking4/TaintTrackingImpl.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/tainttracking1/TaintTrackingImpl.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/tainttrackingforlibraries/TaintTrackingImpl.qll",
-    "swift/ql/lib/codeql/swift/dataflow/internal/tainttracking1/TaintTrackingImpl.qll"
+    "cpp/ql/src/semmle/code/cpp/dataflow/internal/tainttracking1/TaintTrackingImpl.qll",
+    "cpp/ql/src/semmle/code/cpp/dataflow/internal/tainttracking2/TaintTrackingImpl.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/dataflow/internal/tainttracking1/TaintTrackingImpl.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/dataflow/internal/tainttracking2/TaintTrackingImpl.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/dataflow/internal/tainttracking3/TaintTrackingImpl.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/tainttracking1/TaintTrackingImpl.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/tainttracking2/TaintTrackingImpl.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/tainttracking3/TaintTrackingImpl.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/tainttracking4/TaintTrackingImpl.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/tainttracking5/TaintTrackingImpl.qll",
+    "java/ql/src/semmle/code/java/dataflow/internal/tainttracking1/TaintTrackingImpl.qll",
+    "java/ql/src/semmle/code/java/dataflow/internal/tainttracking2/TaintTrackingImpl.qll",
+    "python/ql/src/semmle/python/dataflow/new/internal/tainttracking1/TaintTrackingImpl.qll",
+    "python/ql/src/semmle/python/dataflow/new/internal/tainttracking2/TaintTrackingImpl.qll",
+    "python/ql/src/semmle/python/dataflow/new/internal/tainttracking3/TaintTrackingImpl.qll",
+    "python/ql/src/semmle/python/dataflow/new/internal/tainttracking4/TaintTrackingImpl.qll"
   ],
   "DataFlow Java/C++/C#/Python Consistency checks": [
-    "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImplConsistency.qll",
-    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImplConsistency.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlowImplConsistency.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImplConsistency.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/DataFlowImplConsistency.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlowImplConsistency.qll",
-    "swift/ql/lib/codeql/swift/dataflow/internal/DataFlowImplConsistency.qll"
-  ],
-  "DataFlow Java/C# Flow Summaries": [
-    "java/ql/lib/semmle/code/java/dataflow/internal/FlowSummaryImpl.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/FlowSummaryImpl.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/FlowSummaryImpl.qll",
-    "swift/ql/lib/codeql/swift/dataflow/internal/FlowSummaryImpl.qll"
+    "java/ql/src/semmle/code/java/dataflow/internal/DataFlowImplConsistency.qll",
+    "cpp/ql/src/semmle/code/cpp/dataflow/internal/DataFlowImplConsistency.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/dataflow/internal/DataFlowImplConsistency.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/DataFlowImplConsistency.qll",
+    "python/ql/src/semmle/python/dataflow/new/internal/DataFlowImplConsistency.qll"
   ],
   "SsaReadPosition Java/C#": [
-    "java/ql/lib/semmle/code/java/dataflow/internal/rangeanalysis/SsaReadPositionCommon.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/rangeanalysis/SsaReadPositionCommon.qll"
-  ],
-  "Model as Data Generation Java/C# - CaptureModels": [
-    "java/ql/src/utils/model-generator/internal/CaptureModels.qll",
-    "csharp/ql/src/utils/model-generator/internal/CaptureModels.qll"
+    "java/ql/src/semmle/code/java/dataflow/internal/rangeanalysis/SsaReadPositionCommon.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/rangeanalysis/SsaReadPositionCommon.qll"
   ],
   "Sign Java/C#": [
-    "java/ql/lib/semmle/code/java/dataflow/internal/rangeanalysis/Sign.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/rangeanalysis/Sign.qll"
+    "java/ql/src/semmle/code/java/dataflow/internal/rangeanalysis/Sign.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/rangeanalysis/Sign.qll"
   ],
   "SignAnalysis Java/C#": [
-    "java/ql/lib/semmle/code/java/dataflow/internal/rangeanalysis/SignAnalysisCommon.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/rangeanalysis/SignAnalysisCommon.qll"
+    "java/ql/src/semmle/code/java/dataflow/internal/rangeanalysis/SignAnalysisCommon.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/rangeanalysis/SignAnalysisCommon.qll"
   ],
   "Bound Java/C#": [
-    "java/ql/lib/semmle/code/java/dataflow/Bound.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/Bound.qll"
+    "java/ql/src/semmle/code/java/dataflow/Bound.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/Bound.qll"
   ],
   "ModulusAnalysis Java/C#": [
-    "java/ql/lib/semmle/code/java/dataflow/ModulusAnalysis.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/ModulusAnalysis.qll"
+    "java/ql/src/semmle/code/java/dataflow/ModulusAnalysis.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/ModulusAnalysis.qll"
   ],
   "C++ SubBasicBlocks": [
-    "cpp/ql/lib/semmle/code/cpp/controlflow/SubBasicBlocks.qll",
-    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/SubBasicBlocks.qll"
+    "cpp/ql/src/semmle/code/cpp/controlflow/SubBasicBlocks.qll",
+    "cpp/ql/src/semmle/code/cpp/dataflow/internal/SubBasicBlocks.qll"
   ],
   "IR Instruction": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/Instruction.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/Instruction.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/Instruction.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/Instruction.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/Instruction.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/Instruction.qll",
     "csharp/ql/src/experimental/ir/implementation/raw/Instruction.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/Instruction.qll"
   ],
   "IR IRBlock": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/IRBlock.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/IRBlock.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/IRBlock.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/IRBlock.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/IRBlock.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/IRBlock.qll",
     "csharp/ql/src/experimental/ir/implementation/raw/IRBlock.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/IRBlock.qll"
   ],
   "IR IRVariable": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/IRVariable.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/IRVariable.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/IRVariable.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/IRVariable.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/IRVariable.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/IRVariable.qll",
     "csharp/ql/src/experimental/ir/implementation/raw/IRVariable.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/IRVariable.qll"
   ],
   "IR IRFunction": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/IRFunction.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/IRFunction.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/IRFunction.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/IRFunction.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/IRFunction.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/IRFunction.qll",
     "csharp/ql/src/experimental/ir/implementation/raw/IRFunction.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/IRFunction.qll"
   ],
   "IR Operand": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/Operand.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/Operand.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/Operand.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/Operand.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/Operand.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/Operand.qll",
     "csharp/ql/src/experimental/ir/implementation/raw/Operand.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/Operand.qll"
   ],
   "IR IRType": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/IRType.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/IRType.qll",
     "csharp/ql/src/experimental/ir/implementation/IRType.qll"
   ],
   "IR IRConfiguration": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/IRConfiguration.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/IRConfiguration.qll",
     "csharp/ql/src/experimental/ir/implementation/IRConfiguration.qll"
   ],
   "IR UseSoundEscapeAnalysis": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/UseSoundEscapeAnalysis.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/UseSoundEscapeAnalysis.qll",
     "csharp/ql/src/experimental/ir/implementation/UseSoundEscapeAnalysis.qll"
   ],
   "IR IRFunctionBase": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/internal/IRFunctionBase.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/internal/IRFunctionBase.qll",
     "csharp/ql/src/experimental/ir/implementation/internal/IRFunctionBase.qll"
   ],
   "IR Operand Tag": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/internal/OperandTag.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/internal/OperandTag.qll",
     "csharp/ql/src/experimental/ir/implementation/internal/OperandTag.qll"
   ],
   "IR TInstruction": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/internal/TInstruction.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/internal/TInstruction.qll",
     "csharp/ql/src/experimental/ir/implementation/internal/TInstruction.qll"
   ],
   "IR TIRVariable": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/internal/TIRVariable.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/internal/TIRVariable.qll",
     "csharp/ql/src/experimental/ir/implementation/internal/TIRVariable.qll"
   ],
   "IR IR": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/IR.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/IR.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/IR.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/IR.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/IR.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/IR.qll",
     "csharp/ql/src/experimental/ir/implementation/raw/IR.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/IR.qll"
   ],
   "IR IRConsistency": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/IRConsistency.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/IRConsistency.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/IRConsistency.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/IRConsistency.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/IRConsistency.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/IRConsistency.qll",
     "csharp/ql/src/experimental/ir/implementation/raw/IRConsistency.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/IRConsistency.qll"
   ],
   "IR PrintIR": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/PrintIR.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/PrintIR.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/PrintIR.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/PrintIR.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/PrintIR.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/PrintIR.qll",
     "csharp/ql/src/experimental/ir/implementation/raw/PrintIR.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/PrintIR.qll"
   ],
   "IR IntegerConstant": [
-    "cpp/ql/lib/semmle/code/cpp/ir/internal/IntegerConstant.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/internal/IntegerConstant.qll",
     "csharp/ql/src/experimental/ir/internal/IntegerConstant.qll"
   ],
   "IR IntegerInteval": [
-    "cpp/ql/lib/semmle/code/cpp/ir/internal/IntegerInterval.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/internal/IntegerInterval.qll",
     "csharp/ql/src/experimental/ir/internal/IntegerInterval.qll"
   ],
   "IR IntegerPartial": [
-    "cpp/ql/lib/semmle/code/cpp/ir/internal/IntegerPartial.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/internal/IntegerPartial.qll",
     "csharp/ql/src/experimental/ir/internal/IntegerPartial.qll"
   ],
   "IR Overlap": [
-    "cpp/ql/lib/semmle/code/cpp/ir/internal/Overlap.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/internal/Overlap.qll",
     "csharp/ql/src/experimental/ir/internal/Overlap.qll"
   ],
   "IR EdgeKind": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/EdgeKind.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/EdgeKind.qll",
     "csharp/ql/src/experimental/ir/implementation/EdgeKind.qll"
   ],
   "IR MemoryAccessKind": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/MemoryAccessKind.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/MemoryAccessKind.qll",
     "csharp/ql/src/experimental/ir/implementation/MemoryAccessKind.qll"
   ],
   "IR TempVariableTag": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/TempVariableTag.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/TempVariableTag.qll",
     "csharp/ql/src/experimental/ir/implementation/TempVariableTag.qll"
   ],
   "IR Opcode": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/Opcode.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/Opcode.qll",
     "csharp/ql/src/experimental/ir/implementation/Opcode.qll"
   ],
   "IR SSAConsistency": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/SSAConsistency.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/SSAConsistency.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/SSAConsistency.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/internal/SSAConsistency.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/internal/SSAConsistency.qll"
   ],
   "C++ IR InstructionImports": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/internal/InstructionImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/InstructionImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/InstructionImports.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/internal/InstructionImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/InstructionImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/internal/InstructionImports.qll"
   ],
   "C++ IR IRImports": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/internal/IRImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/IRImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/IRImports.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/internal/IRImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/IRImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/internal/IRImports.qll"
   ],
   "C++ IR IRBlockImports": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/internal/IRBlockImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/IRBlockImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/IRBlockImports.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/internal/IRBlockImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/IRBlockImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/internal/IRBlockImports.qll"
   ],
   "C++ IR IRFunctionImports": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/internal/IRFunctionImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/IRFunctionImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/IRFunctionImports.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/internal/IRFunctionImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/IRFunctionImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/internal/IRFunctionImports.qll"
   ],
   "C++ IR IRVariableImports": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/internal/IRVariableImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/IRVariableImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/IRVariableImports.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/internal/IRVariableImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/IRVariableImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/internal/IRVariableImports.qll"
   ],
   "C++ IR OperandImports": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/internal/OperandImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/OperandImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/OperandImports.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/internal/OperandImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/OperandImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/internal/OperandImports.qll"
   ],
   "C++ IR PrintIRImports": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/internal/PrintIRImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/PrintIRImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/PrintIRImports.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/internal/PrintIRImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/PrintIRImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/internal/PrintIRImports.qll"
   ],
   "C++ SSA SSAConstructionImports": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/SSAConstructionImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/SSAConstructionImports.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/SSAConstructionImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/internal/SSAConstructionImports.qll"
   ],
   "SSA AliasAnalysis": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/AliasAnalysis.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/AliasAnalysis.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/AliasAnalysis.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/internal/AliasAnalysis.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/internal/AliasAnalysis.qll"
   ],
-  "SSA PrintAliasAnalysis": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/PrintAliasAnalysis.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/PrintAliasAnalysis.qll"
-  ],
   "C++ SSA AliasAnalysisImports": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/AliasAnalysisImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/AliasAnalysisImports.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/AliasAnalysisImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/internal/AliasAnalysisImports.qll"
   ],
   "C++ IR ValueNumberingImports": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/gvn/internal/ValueNumberingImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/gvn/internal/ValueNumberingImports.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/gvn/internal/ValueNumberingImports.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/gvn/internal/ValueNumberingImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/gvn/internal/ValueNumberingImports.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/gvn/internal/ValueNumberingImports.qll"
   ],
   "IR SSA SimpleSSA": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/SimpleSSA.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/SimpleSSA.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/internal/SimpleSSA.qll"
   ],
   "IR AliasConfiguration (unaliased_ssa)": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/AliasConfiguration.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/AliasConfiguration.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/internal/AliasConfiguration.qll"
   ],
   "IR SSA SSAConstruction": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/SSAConstruction.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/SSAConstruction.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/SSAConstruction.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/internal/SSAConstruction.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/internal/SSAConstruction.qll"
   ],
   "IR SSA PrintSSA": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/PrintSSA.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/internal/PrintSSA.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/PrintSSA.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/internal/PrintSSA.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/internal/PrintSSA.qll"
   ],
   "IR ValueNumberInternal": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/gvn/internal/ValueNumberingInternal.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/gvn/internal/ValueNumberingInternal.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/gvn/internal/ValueNumberingInternal.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/gvn/internal/ValueNumberingInternal.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/gvn/internal/ValueNumberingInternal.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/gvn/internal/ValueNumberingInternal.qll",
     "csharp/ql/src/experimental/ir/implementation/raw/gvn/internal/ValueNumberingInternal.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/gvn/internal/ValueNumberingInternal.qll"
   ],
   "C++ IR ValueNumber": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/gvn/ValueNumbering.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/gvn/ValueNumbering.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/gvn/ValueNumbering.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/gvn/ValueNumbering.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/gvn/ValueNumbering.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/gvn/ValueNumbering.qll",
     "csharp/ql/src/experimental/ir/implementation/raw/gvn/ValueNumbering.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/gvn/ValueNumbering.qll"
   ],
   "C++ IR PrintValueNumbering": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/gvn/PrintValueNumbering.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/gvn/PrintValueNumbering.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/gvn/PrintValueNumbering.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/gvn/PrintValueNumbering.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/gvn/PrintValueNumbering.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/gvn/PrintValueNumbering.qll",
     "csharp/ql/src/experimental/ir/implementation/raw/gvn/PrintValueNumbering.qll",
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/gvn/PrintValueNumbering.qll"
   ],
   "C++ IR ConstantAnalysis": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/constant/ConstantAnalysis.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/constant/ConstantAnalysis.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/constant/ConstantAnalysis.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/constant/ConstantAnalysis.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/constant/ConstantAnalysis.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/constant/ConstantAnalysis.qll"
   ],
   "C++ IR PrintConstantAnalysis": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/constant/PrintConstantAnalysis.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/constant/PrintConstantAnalysis.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/aliased_ssa/constant/PrintConstantAnalysis.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/constant/PrintConstantAnalysis.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/constant/PrintConstantAnalysis.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/aliased_ssa/constant/PrintConstantAnalysis.qll"
   ],
   "C++ IR ReachableBlock": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/internal/reachability/ReachableBlock.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/reachability/ReachableBlock.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/internal/reachability/ReachableBlock.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/reachability/ReachableBlock.qll"
   ],
   "C++ IR PrintReachableBlock": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/internal/reachability/PrintReachableBlock.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/reachability/PrintReachableBlock.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/internal/reachability/PrintReachableBlock.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/reachability/PrintReachableBlock.qll"
   ],
   "C++ IR Dominance": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/internal/reachability/Dominance.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/reachability/Dominance.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/internal/reachability/Dominance.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/reachability/Dominance.qll"
   ],
   "C++ IR PrintDominance": [
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/raw/internal/reachability/PrintDominance.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/reachability/PrintDominance.qll"
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/raw/internal/reachability/PrintDominance.qll",
+    "cpp/ql/src/semmle/code/cpp/ir/implementation/unaliased_ssa/internal/reachability/PrintDominance.qll"
   ],
   "C# IR InstructionImports": [
     "csharp/ql/src/experimental/ir/implementation/raw/internal/InstructionImports.qll",
@@ -382,18 +352,13 @@
     "csharp/ql/src/experimental/ir/implementation/unaliased_ssa/gvn/internal/ValueNumberingImports.qll"
   ],
   "C# ControlFlowReachability": [
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/ControlFlowReachability.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/rangeanalysis/ControlFlowReachability.qll"
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/ControlFlowReachability.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/rangeanalysis/ControlFlowReachability.qll"
   ],
   "Inline Test Expectations": [
     "cpp/ql/test/TestUtilities/InlineExpectationsTest.qll",
-    "csharp/ql/test/TestUtilities/InlineExpectationsTest.qll",
     "java/ql/test/TestUtilities/InlineExpectationsTest.qll",
-    "python/ql/test/TestUtilities/InlineExpectationsTest.qll",
-    "ruby/ql/test/TestUtilities/InlineExpectationsTest.qll",
-    "ql/ql/test/TestUtilities/InlineExpectationsTest.qll",
-    "go/ql/test/TestUtilities/InlineExpectationsTest.qll",
-    "swift/ql/test/TestUtilities/InlineExpectationsTest.qll"
+    "python/ql/test/TestUtilities/InlineExpectationsTest.qll"
   ],
   "C++ ExternalAPIs": [
     "cpp/ql/src/Security/CWE/CWE-020/ExternalAPIs.qll",
@@ -404,11 +369,11 @@
     "cpp/ql/src/Security/CWE/CWE-020/ir/SafeExternalAPIFunction.qll"
   ],
   "XML": [
-    "cpp/ql/lib/semmle/code/cpp/XML.qll",
-    "csharp/ql/lib/semmle/code/csharp/XML.qll",
-    "java/ql/lib/semmle/code/xml/XML.qll",
-    "javascript/ql/lib/semmle/javascript/XML.qll",
-    "python/ql/lib/semmle/python/xml/XML.qll"
+    "cpp/ql/src/semmle/code/cpp/XML.qll",
+    "csharp/ql/src/semmle/code/csharp/XML.qll",
+    "java/ql/src/semmle/code/xml/XML.qll",
+    "javascript/ql/src/semmle/javascript/XML.qll",
+    "python/ql/src/semmle/python/xml/XML.qll"
   ],
   "DuplicationProblems.inc.qhelp": [
     "cpp/ql/src/Metrics/Files/DuplicationProblems.inc.qhelp",
@@ -442,6 +407,7 @@
     "python/ql/src/Lexical/CommentedOutCodeMetricOverview.inc.qhelp"
   ],
   "FLinesOfDuplicatedCodeCommon.inc.qhelp": [
+    "cpp/ql/src/Metrics/Files/FLinesOfDuplicatedCodeCommon.inc.qhelp",
     "java/ql/src/Metrics/Files/FLinesOfDuplicatedCodeCommon.inc.qhelp",
     "javascript/ql/src/Metrics/FLinesOfDuplicatedCodeCommon.inc.qhelp",
     "python/ql/src/Metrics/FLinesOfDuplicatedCodeCommon.inc.qhelp"
@@ -454,137 +420,20 @@
     "python/ql/src/Lexical/CommentedOutCodeReferences.inc.qhelp"
   ],
   "IDE Contextual Queries": [
-    "cpp/ql/lib/IDEContextual.qll",
-    "csharp/ql/lib/IDEContextual.qll",
-    "java/ql/lib/IDEContextual.qll",
-    "javascript/ql/lib/IDEContextual.qll",
-    "python/ql/lib/analysis/IDEContextual.qll"
+    "cpp/ql/src/IDEContextual.qll",
+    "csharp/ql/src/IDEContextual.qll",
+    "java/ql/src/IDEContextual.qll",
+    "javascript/ql/src/IDEContextual.qll",
+    "python/ql/src/analysis/IDEContextual.qll"
   ],
   "SSA C#": [
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/SsaImplCommon.qll",
-    "csharp/ql/lib/semmle/code/csharp/controlflow/internal/pressa/SsaImplCommon.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/basessa/SsaImplCommon.qll",
-    "csharp/ql/lib/semmle/code/cil/internal/SsaImplCommon.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/SsaImplCommon.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/SsaImplCommon.qll",
-    "swift/ql/lib/codeql/swift/dataflow/internal/SsaImplCommon.qll"
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/SsaImplCommon.qll",
+    "csharp/ql/src/semmle/code/csharp/controlflow/internal/pressa/SsaImplCommon.qll",
+    "csharp/ql/src/semmle/code/csharp/dataflow/internal/basessa/SsaImplCommon.qll",
+    "csharp/ql/src/semmle/code/cil/internal/SsaImplCommon.qll"
   ],
-  "CryptoAlgorithms Python/JS/Ruby": [
-    "javascript/ql/lib/semmle/javascript/security/CryptoAlgorithms.qll",
-    "python/ql/lib/semmle/python/concepts/CryptoAlgorithms.qll",
-    "ruby/ql/lib/codeql/ruby/security/CryptoAlgorithms.qll"
-  ],
-  "CryptoAlgorithmNames Python/JS/Ruby": [
-    "javascript/ql/lib/semmle/javascript/security/internal/CryptoAlgorithmNames.qll",
-    "python/ql/lib/semmle/python/concepts/internal/CryptoAlgorithmNames.qll",
-    "ruby/ql/lib/codeql/ruby/security/internal/CryptoAlgorithmNames.qll"
-  ],
-  "SensitiveDataHeuristics Python/JS": [
-    "javascript/ql/lib/semmle/javascript/security/internal/SensitiveDataHeuristics.qll",
-    "python/ql/lib/semmle/python/security/internal/SensitiveDataHeuristics.qll",
-    "ruby/ql/lib/codeql/ruby/security/internal/SensitiveDataHeuristics.qll"
-  ],
-  "ReDoS Util Python/JS/Ruby/Java": [
-    "javascript/ql/lib/semmle/javascript/security/performance/ReDoSUtil.qll",
-    "python/ql/lib/semmle/python/security/performance/ReDoSUtil.qll",
-    "ruby/ql/lib/codeql/ruby/security/performance/ReDoSUtil.qll",
-    "java/ql/lib/semmle/code/java/security/performance/ReDoSUtil.qll"
-  ],
-  "ReDoS Exponential Python/JS/Ruby/Java": [
-    "javascript/ql/lib/semmle/javascript/security/performance/ExponentialBackTracking.qll",
-    "python/ql/lib/semmle/python/security/performance/ExponentialBackTracking.qll",
-    "ruby/ql/lib/codeql/ruby/security/performance/ExponentialBackTracking.qll",
-    "java/ql/lib/semmle/code/java/security/performance/ExponentialBackTracking.qll"
-  ],
-  "ReDoS Polynomial Python/JS/Ruby/Java": [
-    "javascript/ql/lib/semmle/javascript/security/performance/SuperlinearBackTracking.qll",
-    "python/ql/lib/semmle/python/security/performance/SuperlinearBackTracking.qll",
-    "ruby/ql/lib/codeql/ruby/security/performance/SuperlinearBackTracking.qll",
-    "java/ql/lib/semmle/code/java/security/performance/SuperlinearBackTracking.qll"
-  ],
-  "BadTagFilterQuery Python/JS/Ruby": [
-    "javascript/ql/lib/semmle/javascript/security/BadTagFilterQuery.qll",
-    "python/ql/lib/semmle/python/security/BadTagFilterQuery.qll",
-    "ruby/ql/lib/codeql/ruby/security/BadTagFilterQuery.qll"
-  ],
-  "CFG": [
-    "csharp/ql/lib/semmle/code/csharp/controlflow/internal/ControlFlowGraphImplShared.qll",
-    "ruby/ql/lib/codeql/ruby/controlflow/internal/ControlFlowGraphImplShared.qll",
-    "swift/ql/lib/codeql/swift/controlflow/internal/ControlFlowGraphImplShared.qll"
-  ],
-  "TypeTracker": [
-    "python/ql/lib/semmle/python/dataflow/new/internal/TypeTracker.qll",
-    "ruby/ql/lib/codeql/ruby/typetracking/TypeTracker.qll"
-  ],
-  "CodeQL Tutorial": [
-    "cpp/ql/lib/tutorial.qll",
-    "csharp/ql/lib/tutorial.qll",
-    "java/ql/lib/tutorial.qll",
-    "javascript/ql/lib/tutorial.qll",
-    "python/ql/lib/tutorial.qll",
-    "ruby/ql/lib/tutorial.qll"
-  ],
-  "AccessPathSyntax": [
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/AccessPathSyntax.qll",
-    "java/ql/lib/semmle/code/java/dataflow/internal/AccessPathSyntax.qll",
-    "javascript/ql/lib/semmle/javascript/frameworks/data/internal/AccessPathSyntax.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/AccessPathSyntax.qll",
-    "python/ql/lib/semmle/python/frameworks/data/internal/AccessPathSyntax.qll",
-    "swift/ql/lib/codeql/swift/dataflow/internal/AccessPathSyntax.qll"
-  ],
-  "IncompleteUrlSubstringSanitization": [
-    "javascript/ql/src/Security/CWE-020/IncompleteUrlSubstringSanitization.qll",
-    "ruby/ql/src/queries/security/cwe-020/IncompleteUrlSubstringSanitization.qll"
-  ],
-  "Concepts Python/Ruby/JS": [
-    "python/ql/lib/semmle/python/internal/ConceptsShared.qll",
-    "ruby/ql/lib/codeql/ruby/internal/ConceptsShared.qll",
-    "javascript/ql/lib/semmle/javascript/internal/ConceptsShared.qll"
-  ],
-  "Hostname Regexp queries": [
-    "javascript/ql/src/Security/CWE-020/HostnameRegexpShared.qll",
-    "python/ql/src/Security/CWE-020/HostnameRegexpShared.qll",
-    "ruby/ql/src/queries/security/cwe-020/HostnameRegexpShared.qll"
-  ],
-  "ApiGraphModels": [
-    "javascript/ql/lib/semmle/javascript/frameworks/data/internal/ApiGraphModels.qll",
-    "ruby/ql/lib/codeql/ruby/frameworks/data/internal/ApiGraphModels.qll",
-    "python/ql/lib/semmle/python/frameworks/data/internal/ApiGraphModels.qll"
-  ],
-  "TaintedFormatStringQuery Ruby/JS": [
-    "javascript/ql/lib/semmle/javascript/security/dataflow/TaintedFormatStringQuery.qll",
-    "ruby/ql/lib/codeql/ruby/security/TaintedFormatStringQuery.qll"
-  ],
-  "TaintedFormatStringCustomizations Ruby/JS": [
-    "javascript/ql/lib/semmle/javascript/security/dataflow/TaintedFormatStringCustomizations.qll",
-    "ruby/ql/lib/codeql/ruby/security/TaintedFormatStringCustomizations.qll"
-  ],
-  "HttpToFileAccessQuery JS/Ruby": [
-    "javascript/ql/lib/semmle/javascript/security/dataflow/HttpToFileAccessQuery.qll",
-    "ruby/ql/lib/codeql/ruby/security/HttpToFileAccessQuery.qll"
-  ],
-  "HttpToFileAccessCustomizations JS/Ruby": [
-    "javascript/ql/lib/semmle/javascript/security/dataflow/HttpToFileAccessCustomizations.qll",
-    "ruby/ql/lib/codeql/ruby/security/HttpToFileAccessCustomizations.qll"
-  ],
-  "Typo database": [
-    "javascript/ql/src/Expressions/TypoDatabase.qll",
-    "ql/ql/src/codeql_ql/style/TypoDatabase.qll"
-  ],
-  "Swift declarations test file": [
-    "swift/ql/test/extractor-tests/declarations/declarations.swift",
-    "swift/ql/test/library-tests/parent/declarations.swift"
-  ],
-  "Swift statements test file": [
-    "swift/ql/test/extractor-tests/statements/statements.swift",
-    "swift/ql/test/library-tests/parent/statements.swift"
-  ],
-  "Swift expressions test file": [
-    "swift/ql/test/extractor-tests/expressions/expressions.swift",
-    "swift/ql/test/library-tests/parent/expressions.swift"
-  ],
-  "Swift patterns test file": [
-    "swift/ql/test/extractor-tests/patterns/patterns.swift",
-    "swift/ql/test/library-tests/parent/patterns.swift"
+  "CryptoAlgorithms Python/JS": [
+    "javascript/ql/src/semmle/javascript/security/CryptoAlgorithms.qll",
+    "python/ql/src/semmle/crypto/Crypto.qll"
   ]
-}
+}

conftest.py

@@ -1 +0,0 @@
-# this empty file adds the repo root to PYTHON_PATH when running pytest

cpp/BUILD.bazel

@@ -1,17 +0,0 @@
-package(default_visibility = ["//visibility:public"])
-
-load("@rules_pkg//:mappings.bzl", "pkg_filegroup")
-
-alias(
-    name = "dbscheme",
-    actual = "//cpp/ql/lib:dbscheme",
-)
-
-pkg_filegroup(
-    name = "db-files",
-    srcs = [
-        ":dbscheme",
-        "//cpp/downgrades",
-        "//cpp/ql/lib:dbscheme-stats",
-    ],
-)

cpp/autobuilder/Semmle.Autobuild.Cpp.Tests/Semmle.Autobuild.Cpp.Tests.csproj

@@ -2,7 +2,7 @@
 
   <PropertyGroup>
     <OutputType>Exe</OutputType>
-    <TargetFramework>net6.0</TargetFramework>
+    <TargetFramework>net5.0</TargetFramework>
     <GenerateAssemblyInfo>false</GenerateAssemblyInfo>
     <RuntimeIdentifiers>win-x64;linux-x64;osx-x64</RuntimeIdentifiers>
     <Nullable>enable</Nullable>

cpp/autobuilder/Semmle.Autobuild.Cpp/Semmle.Autobuild.Cpp.csproj

@@ -1,7 +1,7 @@
 <Project Sdk="Microsoft.NET.Sdk">
 
   <PropertyGroup>
-    <TargetFramework>net6.0</TargetFramework>
+    <TargetFramework>net5.0</TargetFramework>
     <AssemblyName>Semmle.Autobuild.Cpp</AssemblyName>
     <RootNamespace>Semmle.Autobuild.Cpp</RootNamespace>
     <ApplicationIcon />
@@ -17,7 +17,7 @@
   </ItemGroup>
 
   <ItemGroup>
-    <PackageReference Include="Microsoft.Build" Version="16.11.0" />
+    <PackageReference Include="Microsoft.Build" Version="16.9.0" />
   </ItemGroup>
 
   <ItemGroup>

cpp/config/suites/c/correctness

@@ -31,7 +31,6 @@
 + semmlecode-cpp-queries/Critical/NewArrayDeleteMismatch.ql: /Correctness/Common Errors
 + semmlecode-cpp-queries/Critical/NewDeleteArrayMismatch.ql: /Correctness/Common Errors
 + semmlecode-cpp-queries/Critical/NewFreeMismatch.ql: /Correctness/Common Errors
-+ semmlecode-cpp-queries/Likely Bugs/Memory Management/UsingExpiredStackAddress.ql: /Correctness/Common Errors
   # Use of Libraries
 + semmlecode-cpp-queries/Likely Bugs/Memory Management/SuspiciousCallToMemset.ql: /Correctness/Use of Libraries
 + semmlecode-cpp-queries/Likely Bugs/Memory Management/SuspiciousSizeof.ql: /Correctness/Use of Libraries

cpp/config/suites/cpp/correctness

@@ -34,7 +34,6 @@
 + semmlecode-cpp-queries/Critical/NewArrayDeleteMismatch.ql: /Correctness/Common Errors
 + semmlecode-cpp-queries/Critical/NewDeleteArrayMismatch.ql: /Correctness/Common Errors
 + semmlecode-cpp-queries/Critical/NewFreeMismatch.ql: /Correctness/Common Errors
-+ semmlecode-cpp-queries/Likely Bugs/Memory Management/UsingExpiredStackAddress.ql: /Correctness/Common Errors
   # Exceptions
 + semmlecode-cpp-queries/Best Practices/Exceptions/AccidentalRethrow.ql: /Correctness/Exceptions
 + semmlecode-cpp-queries/Best Practices/Exceptions/CatchingByValue.ql: /Correctness/Exceptions

cpp/config/suites/security/cwe-120

@@ -5,11 +5,9 @@
   @name Badly bounded write (CWE-120)
 + semmlecode-cpp-queries/Security/CWE/CWE-120/OverrunWrite.ql: /CWE/CWE-120
   @name Potentially overrunning write (CWE-120)
-+ semmlecode-cpp-queries/Security/CWE/CWE-120/VeryLikelyOverrunWrite.ql: /CWE/CWE-120
-  @name Likely overrunning write
 + semmlecode-cpp-queries/Security/CWE/CWE-120/OverrunWriteFloat.ql: /CWE/CWE-120
   @name Potentially overrunning write with float to string conversion (CWE-120)
 + semmlecode-cpp-queries/Best Practices/Likely Errors/OffsetUseBeforeRangeCheck.ql: /CWE/CWE-120
   @name Array offset used before range check (CWE-120)
 + semmlecode-cpp-queries/Likely Bugs/Memory Management/UnsafeUseOfStrcat.ql: /CWE/CWE-120
-  @name Potentially unsafe use of strcat (CWE-120)
+    @name Potentially unsafe use of strcat (CWE-120)

cpp/downgrades/19e31bf071f588bb7efd1e4d5a185ce4f6fbbd84/upgrade.properties

@@ -1,3 +0,0 @@
-description: Add relation for tracking C++ braced initializers
-compatibility: full
-braced_initialisers.rel: delete

cpp/downgrades/23f7cbb88a4eb29f30c3490363dc201bc054c5ff/exprs.ql

@@ -1,17 +0,0 @@
-class Expr extends @expr {
-  string toString() { none() }
-}
-
-class Location extends @location_expr {
-  string toString() { none() }
-}
-
-predicate isExprWithNewBuiltin(Expr expr) {
-  exists(int kind | exprs(expr, kind, _) | 330 <= kind and kind <= 334)
-}
-
-from Expr expr, int kind, int kind_new, Location location
-where
-  exprs(expr, kind, location) and
-  if isExprWithNewBuiltin(expr) then kind_new = 0 else kind_new = kind
-select expr, kind_new, location

cpp/downgrades/23f7cbb88a4eb29f30c3490363dc201bc054c5ff/upgrade.properties

@@ -1,3 +0,0 @@
-description: Add new builtin operations
-compatibility: partial
-exprs.rel: run exprs.qlo

cpp/downgrades/2cd420191e5f782589b4e4efb70127de265390dd/upgrade.properties

@@ -1,2 +0,0 @@
-description: Remove unused legacy relations
-compatibility: backwards

cpp/downgrades/34549c3b0937002f11037d01822ebe99442c1402/attribute_args.ql

@@ -1,17 +0,0 @@
-class AttributeArgument extends @attribute_arg {
-  string toString() { none() }
-}
-
-class Attribute extends @attribute {
-  string toString() { none() }
-}
-
-class LocationDefault extends @location_default {
-  string toString() { none() }
-}
-
-from AttributeArgument arg, int kind, Attribute attr, int index, LocationDefault location
-where
-  attribute_args(arg, kind, attr, index, location) and
-  not arg instanceof @attribute_arg_constant_expr
-select arg, kind, attr, index, location

cpp/downgrades/34549c3b0937002f11037d01822ebe99442c1402/upgrade.properties

@@ -1,4 +0,0 @@
-description: Support all constant attribute arguments
-compatibility: backwards
-attribute_arg_constant.rel: delete
-attribute_args.rel: run attribute_args.qlo

cpp/downgrades/BUILD.bazel

@@ -1,12 +0,0 @@
-load("@rules_pkg//:mappings.bzl", "pkg_files", "strip_prefix")
-
-pkg_files(
-    name = "downgrades",
-    srcs = glob(
-        ["**"],
-        exclude = ["BUILD.bazel"],
-    ),
-    prefix = "cpp/downgrades",
-    strip_prefix = strip_prefix.from_pkg(),
-    visibility = ["//cpp:__pkg__"],
-)

cpp/downgrades/bb0f279f2acd793105a347d589b5afc8715d94c4/upgrade.properties

@@ -1,3 +0,0 @@
-description: Add relation for tracking variables from structured binding declarations
-compatibility: full
-is_structured_binding.rel: delete

cpp/downgrades/cf72c8898d19eb1b3374432cf79d8276cb07ad43/exprparents.ql

@@ -1,21 +0,0 @@
-class Element extends @element {
-  string toString() { none() }
-}
-
-class Expr extends @expr {
-  string toString() { none() }
-}
-
-class Stmt extends @stmt {
-  string toString() { none() }
-}
-
-predicate isStmtWithInitializer(Stmt stmt) {
-  exists(int kind | stmts(stmt, kind, _) | kind = 2 or kind = 11 or kind = 35)
-}
-
-from Expr child, int index, int index_new, Element parent
-where
-  exprparents(child, index, parent) and
-  if isStmtWithInitializer(parent) then index_new = index - 1 else index_new = index
-select child, index_new, parent

cpp/downgrades/cf72c8898d19eb1b3374432cf79d8276cb07ad43/stmtparents.ql

@@ -1,22 +0,0 @@
-class Element extends @element {
-  string toString() { none() }
-}
-
-class Stmt extends @stmt {
-  string toString() { none() }
-}
-
-predicate isStmtWithInitializer(Stmt stmt) {
-  exists(int kind | stmts(stmt, kind, _) | kind = 2 or kind = 11 or kind = 35)
-}
-
-from Stmt child, int index, int index_new, Element parent
-where
-  stmtparents(child, index, parent) and
-  (
-    not isStmtWithInitializer(parent)
-    or
-    index > 0
-  ) and
-  if isStmtWithInitializer(parent) then index_new = index - 1 else index_new = index
-select child, index_new, parent

cpp/downgrades/cf72c8898d19eb1b3374432cf79d8276cb07ad43/upgrade.properties

@@ -1,6 +0,0 @@
-description: Support C++17 if and switch initializers
-compatibility: partial
-if_initialization.rel: delete
-switch_initialization.rel: delete
-exprparents.rel: run exprparents.qlo
-stmtparents.rel: run stmtparents.qlo