michael hohn
8ebe4f8f92
1. bin/host-workflow-ui (58 lines) New executable launcher script: - Uses uv run python for execution - CLI application using plumbum - Takes --container-name argument (default: "mrva-ghmrva") - Launches GUI via create_gui() function 2. mrvahepc/host_workflow_ui.py (571 lines) Complete Tkinter GUI application for MRVA workflow management - 7-step workflow: Check tool, Setup config, Launch DB selector, Browse queries, Submit job, Check status, Download results - Configuration panel with editable paths (GH-MRVA Dir, HEPC Dir, Metadata DB, Selection JSON) - Step buttons with color-coded status (green=success, red=failure) - Session management with multi-line text field - Query file browser with 2-line display for long paths - Real-time output with command logging and file path highlighting Technical details: - All commands execute inside Docker container via docker exec - Auto-generates timestamped session numbers (format: mirva-session-YYYYMMDD-HHMMSS) - Creates sample CodeQL queries if missing (FlatBuffersFunc.ql, Fprintf.ql) - Handles file copying between host and container - Thread-safe execution with queue-based UI updates - Multi-line text widgets for better readability
59 lines
1.6 KiB
Python
Executable File
59 lines
1.6 KiB
Python
Executable File
#!/usr/bin/env -S uv run python
|
|
# -*- python -*-
|
|
"""
|
|
MRVA Host Workflow UI
|
|
|
|
A Tkinter-based interface for managing the complete MRVA workflow:
|
|
1. Check gh-mrva tool
|
|
2. Setup configuration
|
|
3. Launch DB selector GUI
|
|
4. Select query file
|
|
5. Submit MRVA job
|
|
6. Check job status
|
|
7. Download results
|
|
|
|
Provides visual feedback, command logging, and session management.
|
|
Runs on the host and executes commands in the container.
|
|
"""
|
|
|
|
import sys
|
|
from plumbum import cli
|
|
from mrvahepc.host_workflow_ui import create_gui
|
|
|
|
|
|
class WorkflowUIApp(cli.Application):
|
|
"""
|
|
Launch a GUI for managing the MRVA workflow end-to-end.
|
|
|
|
The workflow UI provides a step-by-step interface for:
|
|
- Validating the gh-mrva tool installation
|
|
- Configuring gh-mrva settings
|
|
- Selecting CodeQL databases via the db-selector-gui
|
|
- Choosing query files for analysis
|
|
- Submitting variant analysis jobs
|
|
- Monitoring job status
|
|
- Downloading results and databases
|
|
|
|
All steps execute commands inside the specified Docker container
|
|
and display real-time output with file path highlighting.
|
|
"""
|
|
|
|
container_name = cli.SwitchAttr(
|
|
"--container-name", str, default="mrva-ghmrva",
|
|
help="Name of the Docker container to execute commands in (default: mrva-ghmrva)"
|
|
)
|
|
|
|
def main(self):
|
|
"""Launch the workflow UI."""
|
|
try:
|
|
create_gui(self.container_name)
|
|
except Exception as e:
|
|
print(f"Error launching GUI: {e}", file=sys.stderr)
|
|
return 1
|
|
|
|
return 0
|
|
|
|
|
|
if __name__ == "__main__":
|
|
WorkflowUIApp.run()
|