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Docker definition imports and modifications from mrvacommander

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Michael Hohn
2024-12-16 22:08:49 -08:00
committed by =Michael Hohn
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MRVA_RABBITMQ_HOST=rabbitmq
MRVA_RABBITMQ_PORT=5672
MRVA_RABBITMQ_USER=user
MRVA_RABBITMQ_PASSWORD=password
MINIO_ROOT_USER=user
MINIO_ROOT_PASSWORD=mmusty8432
ARTIFACT_MINIO_ENDPOINT=artifactstore:9000
ARTIFACT_MINIO_ID=${MINIO_ROOT_USER}
ARTIFACT_MINIO_SECRET=${MINIO_ROOT_PASSWORD}
QLDB_MINIO_ENDPOINT=dbstore:9000
QLDB_MINIO_ID=${MINIO_ROOT_USER}
QLDB_MINIO_SECRET=${MINIO_ROOT_PASSWORD}

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*.zip filter=lfs diff=lfs merge=lfs -text
*.blob filter=lfs diff=lfs merge=lfs -text
*.tar filter=lfs diff=lfs merge=lfs -text

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# vscode project dir
.vscode/
# idea project dir
.idea/
# Scratch space
scratch/
#
# Binaries for programs and plugins
*.exe
*.exe~
*.dll
*.so
*.dylib
# Test binary, built with `go test -c`
*.test
# Output of the go coverage tool, specifically when used with LiteIDE
*.out
# Go workspace file
go.work
go.work.sum
# env file
.env
venv/
venv-*/
*.egg-info
__pycache__
README.html
ChangeLog
notes/*.html
# Make timestamp files
mk.*
# temporaries
*.tmp
# Mac OS
.DS_Store

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all: server agent
.phony: view
view: README.html
open $<
html: README.html
%.html: %.md
pandoc --toc=true --standalone $< --out $@
# Build the qldbtools container image
dbt: mk.client-qldbtools-container
mk.client-qldbtools-container:
cd client/containers/qldbtools && \
docker build -t client-qldbtools-container:0.1.24 .
touch $@
# Run a shell in the container with the qldbtools
dbt-run: mk.client-qldbtools-container
docker run --rm -it client-qldbtools-container:0.1.24 /bin/bash
# Run one of the scripts in the container as check
dbt-check: mk.client-qldbtools-container
docker run --rm -it client-qldbtools-container:0.1.24 mc-db-initial-info
dbt-push: mk.dbt-push
mk.dbt-push: mk.client-qldbtools-container
docker tag client-qldbtools-container:0.1.24 ghcr.io/hohn/client-qldbtools-container:0.1.24
docker push ghcr.io/hohn/client-qldbtools-container:0.1.24
touch $@
server:
cd cmd/server && GOOS=linux GOARCH=arm64 go build
agent:
cd cmd/agent && GOOS=linux GOARCH=arm64 go build
fullbuild:
cd cmd/server && GOOS=linux GOARCH=arm64 go build -a
sendsubmit:
cd tools && sh ./submit-request.curl
# Requires
# go install github.com/golangci/golangci-lint/cmd/golangci-lint@latest
lint:
golangci-lint run cmd/... pkg/...
deps:
godepgraph -maxlevel 4 -nostdlib -i github.com/minio/minio-go ./cmd/server | dot -Tpdf > deps-server.pdf && open deps-server.pdf
depa:
godepgraph -maxlevel 4 -nostdlib -i github.com/minio/minio-go ./cmd/agent | dot -Tpdf > deps-agent.pdf && open deps-agent.pdf

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# Overview
TODO diagram
TODO Style notes
- NO package init() functions
- Dynamic behaviour must be explicit
## Client CodeQL Database Selector
Separate from the server's downloading of databases, a client-side interface is needed to generate the `databases.json` file. This
1. must be usable from the shell
2. must be interactive (Python, Jupyter)
3. is session based to allow iterations on selection / narrowing
4. must be queryable. There is no need to reinvent sql / dataframes
Python with dataframes is ideal for this; the project is in `client/`.
## Reverse proxy
For testing, replay flows using mitmweb. This is faster and simpler than using
gh-mrva or the VS Code plugin.
- Set up the virtual environment and install tools
python3.11 -m venv venv
source venv/bin/activate
pip install mitmproxy
For intercepting requests:
1. Start mitmproxy to listen on port 8080 and forward requests to port 8081, with
web interface
mitmweb --mode reverse:http://localhost:8081 -p 8080
1. Change `server` ports in `docker-compose.yml` to
ports:
- "8081:8080" # host:container
1. Start the containers.
1. Submit requests.
3. Save the flows for later replay.
One such session is in `tools/mitmweb-flows`; it can be loaded to replay the
requests:
1. start `mitmweb --mode reverse:http://localhost:8081 -p 8080`
2. `file` > `open` > `tools/mitmweb-flows`
3. replay at least the submit, status, and download requests
## Cross-compile server on host, run it in container
These are simple steps using a single container.
1. build server on host
GOOS=linux GOARCH=arm64 go build
2. build docker image
cd cmd/server
docker build -t server-image .
3. Start container with shared directory
```sh
docker run -it \
-v /Users/hohn/work-gh/mrva/mrvacommander:/mrva/mrvacommander \
server-image
```
4. Run server in container
cd /mrva/mrvacommander/cmd/server/ && ./server
## Using docker-compose
### Steps to build and run the server
Steps to build and run the server in a multi-container environment set up by
docker-compose.
1. Built the server-image, above
1. Build server on host
cd ~/work-gh/mrva/mrvacommander/cmd/server/
GOOS=linux GOARCH=arm64 go build
1. Start the containers
cd ~/work-gh/mrva/mrvacommander/
docker-compose down
docker-compose up -d
4. Run server in its container
cd ~/work-gh/mrva/mrvacommander/
docker exec -it server bash
cd /mrva/mrvacommander/cmd/server/
./server -loglevel=debug -mode=container
1. Test server from the host via
cd ~/work-gh/mrva/mrvacommander/tools
sh ./request_16-Jun-2024_11-33-16.curl
1. Follow server logging via
cd ~/work-gh/mrva/mrvacommander
docker-compose up -d
docker-compose logs -f server
1. Completely rebuild all containers. Useful when running into docker errors
cd ~/work-gh/mrva/mrvacommander
docker-compose up --build
1. Start the server containers and the desktop/demo containers
cd ~/work-gh/mrva/mrvacommander/
docker-compose down --remove-orphans
docker-compose -f docker-compose-demo.yml up -d
1. Test server via remote client by following the steps in [gh-mrva](https://github.com/hohn/gh-mrva/blob/connection-redirect/README.org#compacted-edit-run-debug-cycle)
### Some general docker-compose commands
2. Get service status
docker-compose ps
3. Stop services
docker-compose down
4. View all logs
docker-compose logs
5. check containers from server container
docker exec -it server bash
curl -I http://rabbitmq:15672
### Use the minio ql database db
1. Web access via
open http://localhost:9001/login
username / password are in `docker-compose.yml` for now. The ql db listing
will be at
http://localhost:9001/browser/qldb
1. Populate the database by running
./populate-dbstore.sh
from the host.
1. The names in the bucket use the `owner_repo` format for now,
e.g. `google_flatbuffers_db.zip`.
TODO This will be enhanced to include other data later
1. Test Go's access to the dbstore -- from the host -- via
cd ./test
go test -v
This should produce
=== RUN TestDBListing
dbstore_test.go:44: Object Key: google_flatbuffers_db.zip
dbstore_test.go:44: Object Key: psycopg_psycopg2_db.zip
### Use the minio query pack db
1. Web access via
open http://localhost:19001/login
username / password are in `docker-compose.yml` for now. The ql db listing
will be at
http://localhost:19001/browser/qpstore
### To run Use the minio query pack db

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* containers
1. start the containers
#+BEGIN_SRC sh
cd ~/work-gh/mrva/mrva-docker/
docker-compose down
docker ps
docker-compose -f docker-compose-demo.yml up -d
#+END_SRC
2. View all logs
: docker-compose logs
3. follow all logs
: docker-compose logs -f
4. Follow server logging via
#+BEGIN_SRC sh
cd ~/work-gh/mrva/mrvacommander
docker-compose up -d
docker-compose logs -f server
#+END_SRC
5. Use gh-mrva container to send request via cli
XX: [[file:~/work-gh/mrva/mrvacommander/notes/cli-end-to-end-detailed.org::*Run MRVA from command line][Run MRVA from command line]]
#+BEGIN_SRC sh
docker exec -it mrva-docker-client-ghmrva-1 bash
#+END_SRC

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FROM golang:1.22 AS builder
# Set the working directory inside the container
WORKDIR /app
# Copy the host directory containing the git clone to the container
COPY mrvaagent.tmp /app/mrvaagent
# Set the environment variables for Go modules
ENV GO111MODULE=on
ENV CGO_ENABLED=0
# Build the project
WORKDIR /app/mrvaagent
RUN go mod tidy && go build -o /app/mrvaagent-binary
# # Download dependencies
# RUN go mod download
# Create a runtime container
FROM ubuntu:24.10 as runner
ENV DEBIAN_FRONTEND=noninteractive
# Build argument for CodeQL version, defaulting to the latest release
ARG CODEQL_VERSION=latest
# Install packages
RUN apt-get update && apt-get install --no-install-recommends --assume-yes \
unzip \
curl \
ca-certificates \
default-jdk
# If the version is 'latest', lsget the latest release version from GitHub, unzip the bundle into /opt, and delete the archive
RUN if [ "$CODEQL_VERSION" = "latest" ]; then \
CODEQL_VERSION=$(curl -s https://api.github.com/repos/github/codeql-cli-binaries/releases/latest | grep '"tag_name"' | sed -E 's/.*"([^"]+)".*/\1/'); \
fi && \
echo "Using CodeQL version $CODEQL_VERSION" && \
curl -L "https://github.com/github/codeql-cli-binaries/releases/download/$CODEQL_VERSION/codeql-linux64.zip" -o /tmp/codeql.zip && \
unzip /tmp/codeql.zip -d /opt && \
rm /tmp/codeql.zip && \
chmod -R +x /opt/codeql
# Set environment variables for CodeQL
ENV CODEQL_CLI_PATH=/opt/codeql/codeql
# Set environment variable for CodeQL for `codeql database analyze` support on ARM
# This env var has no functional effect on CodeQL when running on x86_64 linux
ENV CODEQL_JAVA_HOME=/usr
# Copy the built binary from the builder stage
COPY --from=builder /app/mrvaagent-binary /usr/local/bin/mrvaagent
# Run the agent with the default mode set to container
ENTRYPOINT ["/usr/local/bin/mrvaagent"]

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all: mk.mrvaagent
mrvaagent.tmp:
rm -fR mrvaagent.tmp
cp -r ../../../mrvaagent mrvaagent.tmp
MAG_TARGET := mrva-agent:0.1.24
mag: mk.mrvaagent
mk.mrvaagent: mrvaagent.tmp
docker build --no-cache -t ${MAG_TARGET} .
touch $@
magserve: mag
docker run --env-file ../../.env.container --rm -it ${MAG_TARGET} /bin/bash
clean:
-docker rmi -f ${MAG_TARGET}
-rm mrvaagent
mag-push: mk.mag-push
mk.mag-push: mk.mrvaagent
docker tag ${MAG_TARGET} ghcr.io/hohn/${MAG_TARGET}
docker push ghcr.io/hohn/${MAG_TARGET}
touch $@
mag-test:
docker pull ghcr.io/hohn/${MAG_TARGET}
docker run --env-file ../../.env.container \
--name test-mrva-agent \
--rm -it ghcr.io/hohn/${MAG_TARGET} \
sh

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* agent image setup
- build container
#+BEGIN_SRC sh
# Build the container via
cd ~/work-gh/mrva/mrva-docker/containers/agent/
make mk.mrvaagent
# Run the container in standalone mode via
cd ~/work-gh/mrva/mrva-docker/containers/agent/
make magserve
#+END_SRC
- Push this container
#+BEGIN_SRC sh
# Push container
cd ~/work-gh/mrva/mrva-docker/containers/agent/
make mk.mag-push
#+END_SRC
- Test the registry image
#+BEGIN_SRC sh
# Test pushed container
make mag-test
#+END_SRC

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# Use a minimal base image
FROM busybox
COPY dbsdata_backup.tar /
# Just run sh if this container is ever started
CMD ["sh"]

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* MRVA cli tools container
These instructions are from the original mrvacommander. This container will be
deprecated, so these instructions should be used in the mrvacommander context.
#+BEGIN_SRC sh
# Run the raw container assembly
cd ~/work-gh/mrva/mrvacommander/
docker-compose -f docker-compose-demo-build.yml up -d
# Use the following commands to populate the mrvacommander database storage
cd ~/work-gh/mrva/mrvacommander/client/qldbtools
mkdir -p scratch
source venv/bin/activate
./bin/mc-db-initial-info ~/work-gh/mrva/mrva-open-source-download > scratch/db-info-1.csv
./bin/mc-db-refine-info < scratch/db-info-1.csv > scratch/db-info-2.csv
./bin/mc-db-unique cpp < scratch/db-info-2.csv > scratch/db-info-3.csv
./bin/mc-db-generate-selection -n 11 \
scratch/vscode-selection.json \
scratch/gh-mrva-selection.json \
< scratch/db-info-3.csv
# Several seconds start-up time; fast db population
./bin/mc-db-populate-minio -n 11 < scratch/db-info-3.csv
# While the containers are running, this will show minio's storage. The zip files
# are split into part.* and xl.meta by minio. Use the web interface to see real
# names.
docker exec dbstore ls -R /data/mrvacommander/
# Open browser to see the file listing
open http://localhost:9001/browser/qldb
# list the volumes
docker volume ls |grep dbs
docker volume inspect mrvacommander_dbsdata
# Persist volume using container
cd ~/work-gh/mrva/mrvacommander/demo/containers/dbsdata
# Use mrvacommander_dbsdata to access the compose cluster
# EITHER
# Get the data as tar file from the image using container
rm -f dbsdata_backup.tar
docker run --rm \
-v mrvacommander_dbsdata:/data \
-v $(pwd):/backup \
busybox sh -c "tar cf /backup/dbsdata_backup.tar /data"
# OR
# Use gnu tar on host. The macos tar adds extended attributes
# brew install gnu-tar
rm -f dbsdata_backup.tar && gtar cf dbsdata_backup.tar data/
# Build container with the tarball
cd ~/work-gh/mrva/mrvacommander/demo/containers/dbsdata
docker build -t dbsdata-container:0.1.24 .
docker image ls | grep dbs
# check container contents
docker run -it dbsdata-container:0.1.24 /bin/sh
docker run -it dbsdata-container:0.1.24 ls data/qldb
# Tag the dbstore backing container
docker inspect dbsdata-container:0.1.24 |grep Id
docker tag dbsdata-container:0.1.24 ghcr.io/hohn/dbsdata-container:0.1.24
# Push the pre-populated image
docker push ghcr.io/hohn/dbsdata-container:0.1.24
# Check the tagged image
docker run -it ghcr.io/hohn/dbsdata-container:0.1.24 ls data/qldb
# Shut down the container assembly
docker-compose -f docker-compose-demo-build.yml down
#+END_SRC

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# ######################
# Use an official Golang image as the base image
FROM golang:1.22 AS builder
# Set the working directory inside the container
WORKDIR /work-gh/mrva/gh-mrva
# Clone the repository
RUN git clone https://github.com/hohn/gh-mrva.git . &&\
git checkout hohn-0.1.24-demo
# Download dependencies
RUN go mod download
# Build the Go binary
RUN go build .
# ######################
# Provide codeql and java
#
FROM ubuntu:24.10 as runner
ENV DEBIAN_FRONTEND=noninteractive
# Build argument for CodeQL version, defaulting to the latest release
ARG CODEQL_VERSION=latest
# Install packages
RUN apt-get update && apt-get install --no-install-recommends --assume-yes \
unzip \
curl \
ca-certificates \
default-jdk
# If the version is 'latest', get the latest release version from GitHub, unzip
# the bundle into /opt, and delete the archive
RUN if [ "$CODEQL_VERSION" = "latest" ]; then \
CODEQL_VERSION=$(curl -s https://api.github.com/repos/github/codeql-cli-binaries/releases/latest | grep '"tag_name"' | sed -E 's/.*"([^"]+)".*/\1/'); \
fi && \
echo "Using CodeQL version $CODEQL_VERSION" && \
curl -L "https://github.com/github/codeql-cli-binaries/releases/download/$CODEQL_VERSION/codeql-linux64.zip" -o /tmp/codeql.zip && \
unzip /tmp/codeql.zip -d /opt && \
rm /tmp/codeql.zip && \
chmod -R +x /opt/codeql
# Set environment variables for CodeQL
ENV CODEQL_CLI_PATH=/opt/codeql/codeql
# Set environment variable for CodeQL for `codeql database analyze` support on ARM
# This env var has no functional effect on CodeQL when running on x86_64 linux
ENV CODEQL_JAVA_HOME=/usr
# ######################
# Set the working directory inside the final image
WORKDIR /app
# Copy the binary from the builder stage
COPY --from=builder /work-gh/mrva/gh-mrva/gh-mrva /usr/local/bin/gh-mrva
# Put CodeQL on the PATH
ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/codeql
# Run forever
CMD ["tail", "-f", "/dev/null"]

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ghm: mk.client-ghmrva-container
mk.client-ghmrva-container:
docker build -t client-ghmrva-container:0.1.24 .
touch $@
ghm-push: mk.ghm-push
mk.ghm-push: mk.client-ghmrva-container
docker tag client-ghmrva-container:0.1.24 ghcr.io/hohn/client-ghmrva-container:0.1.24
docker push ghcr.io/hohn/client-ghmrva-container:0.1.24
touch $@
ghm-run:
docker run --rm -it ghcr.io/hohn/client-ghmrva-container:0.1.24 /bin/bash

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* MRVA cli tools container
Set up / run:
#+BEGIN_SRC sh
# Build
cd ~/work-gh/mrva/mrvacommander/client/containers/ghmrva/
make ghm
# Run
docker run -ti client-ghmrva-container:0.1.24 /bin/bash
# In the container
gh-mrva -h
codeql -h
# Push
make ghm-push
#+END_SRC

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# Use a Python 3.11 image as the base
FROM python:3.11-slim
# Install git
RUN apt-get update && apt-get install -y git
# Create the required directory structure
RUN mkdir -p /work-gh/mrva/
# Change to the directory and clone the repository
WORKDIR /work-gh/mrva/
RUN git clone https://github.com/hohn/mrvacommander.git && \
cd mrvacommander && \
git checkout hohn-0.1.24-demo
# Change to the client directory
WORKDIR /work-gh/mrva/mrvacommander/client/qldbtools/
# We're in a container, so use pip globally -- no virtual env
RUN pip install --upgrade pip
# Install the required Python packages from requirements.txt
RUN pip install --no-cache-dir -r requirements.txt
# Install qldbtools
RUN pip install .
# Run forever
CMD ["tail", "-f", "/dev/null"]

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{"git_branch": "HEAD", "git_commit_id": "2b41915dac8966e95f9e63638d30769b0d69ad68", "git_repo": "aircrack-ng", "ingestion_datetime_utc": "2024-06-07 16:57:47.683012+00:00", "result_url": "http://hepc/db-collection-py/aircrack-ng-aircrack-ng-ctsj-41ebbe.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.17.4", "projname": "aircrack-ng/aircrack-ng"}
{"git_branch": "HEAD", "git_commit_id": "8b399e9f51701b34f2f3c9375e637e6fffc642b7", "git_repo": "Serial-Studio", "ingestion_datetime_utc": "2023-10-01T15:18:43.503672671Z", "result_url": "http://hepc/db-collection-py/Serial-Studio-Serial-Studio-ctsj-2b2721.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.12.0", "projname": "Serial-Studio/Serial-Studio"}
{"git_branch": "HEAD", "git_commit_id": "9a9308fd5477d2a44f4e491d5a712546d4a2b3e4", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-07-22 13:30:21.681180+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-0189aa.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.18.0", "projname": "bulk-builder/bulk-builder"}
{"git_branch": "HEAD", "git_commit_id": "34412555665923bc07d43ce970e9d81be3795de7", "git_repo": "UEFITool", "ingestion_datetime_utc": "2024-07-04 19:00:38.543297+00:00", "result_url": "http://hepc/db-collection-py/UEFITool-UEFITool-ctsj-ee2d3c.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.17.6", "projname": "UEFITool/UEFITool"}
{"git_branch": "HEAD", "git_commit_id": "00aa56f5257060304d41f09651c6ab58ee6104d6", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-07-18 14:12:52.904410+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-0c6575.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-python", "tool_version": "2.18.0", "projname": "bulk-builder/bulk-builder"}
{"git_branch": "HEAD", "git_commit_id": "e4bffa0a7450e1abd9f4df9565728ae18d86cfd2", "git_repo": "attrs", "ingestion_datetime_utc": "2024-07-18 22:34:57.795427+00:00", "result_url": "http://hepc/db-collection-py/attrs-attrs-ctsj-e2c939.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-python", "tool_version": "2.18.0", "projname": "attrs/attrs"}
{"git_branch": "HEAD", "git_commit_id": "9620901afce56f720e856aca600951c9b61a9460", "git_repo": "apprise", "ingestion_datetime_utc": "2024-07-22 22:26:48.720348+00:00", "result_url": "http://hepc/db-collection-py/apprise-apprise-ctsj-3f4a4e.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-python", "tool_version": "2.18.0", "projname": "apprise/apprise"}
{"git_branch": "HEAD", "git_commit_id": "c38e6c8cfba28980aea8f895c71b376e8a5155d5", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2022-04-16T12:45:56.739003883Z", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-0d6cf6.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.8.5", "projname": "bulk-builder/bulk-builder"}
{"git_branch": "HEAD", "git_commit_id": "18f6be580b12dc406ef356b2cd65f47c24fce63e", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-07-19 05:46:23.392157+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-0d667f.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-python", "tool_version": "2.18.0", "projname": "bulk-builder/bulk-builder"}
{"git_branch": "HEAD", "git_commit_id": "a587921bac074b1bd1b0a0a5536587660a9b954e", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-07-19 16:13:39.094478+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-0a6352.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-java", "tool_version": "2.18.0", "projname": "bulk-builder/bulk-builder"}
{"git_branch": "HEAD", "git_commit_id": "9b361c7ff497d57651856650667aece8230fab6d", "git_repo": "BentoML", "ingestion_datetime_utc": "2024-07-24 02:17:07.095690+00:00", "result_url": "http://hepc/db-collection-py/BentoML-BentoML-ctsj-d6963d.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-python", "tool_version": "2.18.0", "projname": "BentoML/BentoML"}
{"git_branch": "HEAD", "git_commit_id": "8b399e9f51701b34f2f3c9375e637e6fffc642b7", "git_repo": "Serial-Studio", "ingestion_datetime_utc": "2023-10-01T15:18:43.503672671Z", "result_url": "http://hepc/db-collection-py/Serial-Studio-Serial-Studio-ctsj-2b2721.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.12.0", "projname": "Serial-Studio/Serial-Studio"}
{"git_branch": "HEAD", "git_commit_id": "53ad2da1a8e6e79e0986ddfa3a45e1db6fdd491c", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-05-14 02:24:19.208812+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-01864e.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-python", "tool_version": "2.17.0", "projname": "bulk-builder/bulk-builder"}
{"git_branch": "HEAD", "git_commit_id": "db8f1a7930c6b5826357646746337dafc983f953", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2023-11-22 01:18:25.079473+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-099796.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-python", "tool_version": "2.15.2", "projname": "bulk-builder/bulk-builder"}
{"git_branch": "HEAD", "git_commit_id": "f8df9dd749a549dec20aa286a7639ba04190faab", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-05-12 16:39:28.854142+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-0d7b69.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.17.0", "projname": "bulk-builder/bulk-builder"}
{"git_branch": "HEAD", "git_commit_id": "b5274976cb0a792d05d541a749c0adcd9d20062d", "git_repo": "behave", "ingestion_datetime_utc": "2024-05-11 19:20:51.916333+00:00", "result_url": "http://hepc/db-collection-py/behave-behave-ctsj-b297b5.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-python", "tool_version": "2.17.2", "projname": "behave/behave"}
{"git_branch": "HEAD", "git_commit_id": "4c825c198df470506b0f84da0b25b3b385150dcb", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-04-25 03:26:03.986270+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-035849.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.17.0", "projname": "bulk-builder/bulk-builder"}
{"git_branch": "HEAD", "git_commit_id": "a8b8ff0acc6fcc629d08a3a9952f83be56a9a3c3", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-05-03 13:30:48.829134+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-051a5c.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-java", "tool_version": "2.17.0", "projname": "bulk-builder/bulk-builder"}
{"git_branch": "HEAD", "git_commit_id": "9ef05731e7c6cbad2e897faa7c526558eed3ceaa", "git_repo": "aws-sam-cli", "ingestion_datetime_utc": "2024-05-14 01:03:18.130142+00:00", "result_url": "http://hepc/db-collection-py/aws-sam-cli-aws-sam-cli-ctsj-b7f561.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-python", "tool_version": "2.17.2", "projname": "aws-sam-cli/aws-sam-cli"}
{"git_branch": "HEAD", "git_commit_id": "16865390a653ceaeabe354df1b37e4a775161a70", "git_repo": "aws-sdk-pandas", "ingestion_datetime_utc": "2024-05-13 15:13:31.853042+00:00", "result_url": "http://hepc/db-collection-py/aws-sdk-pandas-aws-sdk-pandas-ctsj-2b7750.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-python", "tool_version": "2.17.2", "projname": "aws-sdk-pandas/aws-sdk-pandas"}
{"git_branch": "HEAD", "git_commit_id": "093856995af0811d3ebbe8c179b8febf4ae706f0", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-03-20 14:18:02.500590+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-103a8a.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-python", "tool_version": "2.16.4", "projname": "bulk-builder/bulk-builder"}
{"git_branch": "HEAD", "git_commit_id": "0573e6f96637f08fb4cb85e0552f0622d36827d4", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-01-24 09:21:05.977294+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-0cdf2f.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-python", "tool_version": "2.15.5", "projname": "bulk-builder/bulk-builder"}
{"git_branch": "HEAD", "git_commit_id": "93314995a5ee2217d58c3d9cbcbdef5df6c34566", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-05-09 05:29:25.243273+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-0a35a1.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.17.0", "projname": "bulk-builder/bulk-builder"}

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import os
import json
# Input and output file paths
input_file = "metadata.json"
output_file = "filtered_metadata.json"
# Read the metadata file line by line
with open(input_file, "r") as infile:
lines = infile.readlines()
filtered_lines = []
for line in lines:
try:
# Parse the line as JSON
data = json.loads(line.strip())
# Extract the tail of the result_url
result_url_tail = os.path.basename(data.get("result_url", ""))
# Check if a file with the same name exists in the current directory
if os.path.isfile(result_url_tail):
filtered_lines.append(line)
except json.JSONDecodeError:
print(f"Skipping invalid JSON line: {line.strip()}")
# Write the filtered lines to the output file
with open(output_file, "w") as outfile:
outfile.writelines(filtered_lines)
print(f"Filtered metadata saved to {output_file}")

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{"git_branch": "HEAD", "git_commit_id": "2b41915dac8966e95f9e63638d30769b0d69ad68", "git_repo": "aircrack-ng", "ingestion_datetime_utc": "2024-06-07 16:57:47.683012+00:00", "result_url": "http://hepc/db-collection-py/aircrack-ng-aircrack-ng-ctsj-41ebbe.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.17.4", "projname": "aircrack-ng/aircrack-ng"}
{"git_branch": "HEAD", "git_commit_id": "b44d288f423ede0fc7cdbf92d07a7772cd727de4", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-07-12 01:41:01.162736+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-41932e.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.17.6", "projname": "bulk-builder/bulk-builder"}
{"git_branch": "HEAD", "git_commit_id": "8b399e9f51701b34f2f3c9375e637e6fffc642b7", "git_repo": "Serial-Studio", "ingestion_datetime_utc": "2023-10-01T15:18:43.503672671Z", "result_url": "http://hepc/db-collection-py/Serial-Studio-Serial-Studio-ctsj-2b2721.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.12.0", "projname": "Serial-Studio/Serial-Studio"}
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{"git_branch": "HEAD", "git_commit_id": "9733a08e93a23d36233f58981670355d27d55153", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-05-09 07:26:11.101135+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-b624cf.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.17.0", "projname": "bulk-builder/bulk-builder"}
{"git_branch": "HEAD", "git_commit_id": "b274a950fcd05b19f0f3f4df295fb053d81d7f5c", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-05-07 15:52:45.817045+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-d94ffd.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.17.0", "projname": "bulk-builder/bulk-builder"}

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# Use a Python 3.11 image as the base
FROM python:3.11-slim
# Install git
RUN apt-get update && apt-get install -y git
# Create the required directory structure
RUN mkdir -p /work-gh/mrva/
# Change to the directory and clone the repository
WORKDIR /work-gh/mrva/
RUN git clone https://github.com/hohn/mrvacommander.git && \
cd mrvacommander && \
git checkout hohn-0.1.24-demo
# Change to the client directory
WORKDIR /work-gh/mrva/mrvacommander/client/qldbtools/
# We're in a container, so use pip globally -- no virtual env
RUN pip install --upgrade pip
# Install the required Python packages from requirements.txt
RUN pip install --no-cache-dir -r requirements.txt
# Install qldbtools
RUN pip install .
# Run forever
CMD ["tail", "-f", "/dev/null"]

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DBT_TARGET := client-qldbtools-container:0.1.24
# Build the qldbtools container image
dbt: mk.client-qldbtools-container
mk.client-qldbtools-container:
docker build -t ${DBT_TARGET} .
touch $@
# Run a shell in the container with the qldbtools
dbt-run: dbt
docker run --rm -it ${DBT_TARGET} /bin/bash
# Run one of the scripts in the container as check. Should exit with error.
dbt-check: dbt
docker run --rm -it ${DBT_TARGET} mc-db-initial-info
dbt-push: mk.dbt-push
mk.dbt-push: dbt
docker tag ${DBT_TARGET} ghcr.io/hohn/${DBT_TARGET}
docker push ghcr.io/hohn/${DBT_TARGET}
touch $@
dbt-test:
docker pull ghcr.io/hohn/${DBT_TARGET}
docker run --rm -it --name test-dbt-server ghcr.io/hohn/${DBT_TARGET} sh

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* MRVA python tools container
Set up Docker image with python 3.11 and pip and the qldbtools. The targets are
in the =Makefile=; most important are
#+BEGIN_SRC sh
# Build
make dbt
# Check
make dbt-check
#+END_SRC

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FROM golang:1.22 AS builder
# Set the working directory inside the container
WORKDIR /app
# Copy the host directory containing the git clone to the container
COPY mrvaserver.tmp /app/mrvaserver
# Set the environment variables for Go modules
ENV GO111MODULE=on
ENV CGO_ENABLED=0
# Build the project
WORKDIR /app/mrvaserver
RUN go mod tidy && go build -o /app/mrvaserver-binary
# # Download dependencies
# RUN go mod download
# Create a runtime container
FROM ubuntu:24.10 as runner
ENV DEBIAN_FRONTEND=noninteractive
# Build argument for CodeQL version, defaulting to the latest release
ARG CODEQL_VERSION=latest
# Install packages
RUN apt-get update && apt-get install --no-install-recommends --assume-yes \
unzip \
curl \
ca-certificates \
default-jdk
# If the version is 'latest', lsget the latest release version from GitHub, unzip the bundle into /opt, and delete the archive
RUN if [ "$CODEQL_VERSION" = "latest" ]; then \
CODEQL_VERSION=$(curl -s https://api.github.com/repos/github/codeql-cli-binaries/releases/latest | grep '"tag_name"' | sed -E 's/.*"([^"]+)".*/\1/'); \
fi && \
echo "Using CodeQL version $CODEQL_VERSION" && \
curl -L "https://github.com/github/codeql-cli-binaries/releases/download/$CODEQL_VERSION/codeql-linux64.zip" -o /tmp/codeql.zip && \
unzip /tmp/codeql.zip -d /opt && \
rm /tmp/codeql.zip && \
chmod -R +x /opt/codeql
# Set environment variables for CodeQL
ENV CODEQL_CLI_PATH=/opt/codeql/codeql
# Set environment variable for CodeQL for `codeql database analyze` support on ARM
# This env var has no functional effect on CodeQL when running on x86_64 linux
ENV CODEQL_JAVA_HOME=/usr
# Copy the built binary from the builder stage
COPY --from=builder /app/mrvaserver-binary /usr/local/bin/mrvaserver
# Run the server with the default mode set to container
ENTRYPOINT ["/usr/local/bin/mrvaserver"]
CMD ["--mode=container"]

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all: mk.mrvaserver
mrvaserver.tmp:
rm -fR mrvaserver.tmp
cp -r ../../../mrvaserver mrvaserver.tmp
MSER_TARGET := mrva-server:0.1.24
mser: mk.mrvaserver
mk.mrvaserver: mrvaserver.tmp
docker build -t ${MSER_TARGET} .
touch $@
mserserve: mser
docker run --env-file ../../.env.container --rm -it ${MSER_TARGET} /bin/bash
clean:
-docker rmi -f ${MSER_TARGET}
-rm mrvaserver
mser-push: mk.mser-push
mk.mser-push: mk.mrvaserver
docker tag ${MSER_TARGET} ghcr.io/hohn/${MSER_TARGET}
docker push ghcr.io/hohn/${MSER_TARGET}
touch $@
mser-test:
docker pull ghcr.io/hohn/${MSER_TARGET}
docker run --rm -it --name test-mrva-server-codeql ghcr.io/hohn/${MSER_TARGET} sh

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* server image setup
- build container
#+BEGIN_SRC sh
# Build the container via
cd ~/work-gh/mrva/mrva-docker/containers/server/
docker build --no-cache -t mrva-server:0.1.24 .
# Run the container in standalone mode via
cd ~/work-gh/mrva/mrva-docker/containers/server/
docker run -d mrva-server:0.1.24
docker run --env-file ../../.env.container --rm -it \
-it mrva-server:0.1.24 --mode=container --loglevel=debug \
/bin/bash
#+END_SRC
- Push this container
#+BEGIN_SRC sh
# Push container
docker tag mrva-server:0.1.24 ghcr.io/hohn/mrva-server:0.1.24
docker push ghcr.io/hohn/mrva-server:0.1.24
#+END_SRC
- Test the registry image
#+BEGIN_SRC sh
# Test pushed container
docker pull ghcr.io/hohn/mrva-server:0.1.24
docker run \
--env-file ../../.env.container \
--name test-mrva-server \
--rm -it ghcr.io/hohn/mrva-server:0.1.24 \
--mode=container --loglevel=debug \
/bin/bash
#+END_SRC

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* server image setup

6
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[commander]
[logger]
[queue]
[storage]
StartingID = 54673
[runner]

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FROM codercom/code-server:4.92.2-debian
# ======================
# Pre-install a custom JDK for this platform and redirect CodeQL to it
USER root
ENV DEBIAN_FRONTEND=noninteractive
# Install packages
RUN apt-get update && apt-get install --no-install-recommends --assume-yes \
ca-certificates \
curl \
default-jdk \
git \
libcurl4-openssl-dev \
libssl-dev \
python3 \
python3-dev \
unzip
# Build argument for CodeQL version, defaulting to the latest release
ARG CODEQL_VERSION=latest
# If the version is 'latest', get the latest release version from GitHub, unzip
# the bundle into /opt, and delete the archive
RUN if [ "$CODEQL_VERSION" = "latest" ]; then \
CODEQL_VERSION=$(curl -s https://api.github.com/repos/github/codeql-cli-binaries/releases/latest | grep '"tag_name"' | sed -E 's/.*"([^"]+)".*/\1/'); \
fi && \
echo "Using CodeQL version $CODEQL_VERSION" && \
curl -L "https://github.com/github/codeql-cli-binaries/releases/download/$CODEQL_VERSION/codeql-linux64.zip" -o /tmp/codeql.zip && \
unzip /tmp/codeql.zip -d /opt && \
rm /tmp/codeql.zip && \
chmod -R +x /opt/codeql
# ======================
# Install code-server
USER coder
# Set environment variables
ENV PASSWORD mrva
# Install VS Code extensions as user root -- globally
RUN code-server --install-extension ms-python.python \
&& code-server --install-extension esbenp.prettier-vscode \
&& code-server --install-extension GitHub.vscode-codeql
# Expose the port that Code Server runs on
EXPOSE 9080
# Point CodeQL to the java binary for this platform
ENV CODEQL_JAVA_HOME=/usr
# Add
# codeQl.cli.executablePath
# to user settings.
# This is in addition to the environment variable CODEQL_JAVA_HOME which has no
# effect on the plugin
USER root
COPY ./settings.json /home/coder/.local/share/code-server/User/
RUN chown -R coder:coder /home/coder/.local/share/code-server/
# Start Code Server
ENTRYPOINT ["dumb-init", "code-server", "--bind-addr", "0.0.0.0:9080", "."]
# Run as the coder user
USER coder

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* MRVA VS Code server container
On the host:
#+BEGIN_SRC sh
# Build the container via
cd ~/work-gh/mrva/mrva-docker/containers/vscode/
docker build --no-cache -t code-server-initialized:0.1.24 .
# Run the container in standalone mode via
cd ~/work-gh/mrva/mrva-docker/containers/vscode/
docker run -v ~/work-gh/mrva/vscode-codeql:/work-gh/mrva/vscode-codeql \
-d -p 9080:9080 code-server-initialized:0.1.24
#+END_SRC
- Connect to it at http://localhost:9080/?folder=/home/coder, password is =mrva=.
Inside the container:
- Setup inside the container
#+BEGIN_SRC shell
cd
export PATH=/opt/codeql:$PATH
codeql pack init qldemo
cd qldemo
codeql pack add codeql/python-all@1.0.6
#+END_SRC
- Create a new file =qldemo/simple.ql= with this query. Open it in VS Code.
The plugin will download the CodeQL binaries (but never use them -- the
configuration redirects)
#+BEGIN_SRC sh
cd
cat > qldemo/simple.ql <<eof
import python
select 42
eof
#+END_SRC
- Create database.
#+BEGIN_SRC sh
cd ~/qldemo
cat > short.py <<EOF
print('hello world')
EOF
export PATH=/opt/codeql:$PATH
codeql database create --language=python -s . -v short-db
#+END_SRC
- Set the database as default and run the query =simple.ql=
- Add the customized VS Code plugin
On the host
#+BEGIN_SRC sh
cd ~/work-gh/mrva/vscode-codeql
git checkout mrva-standalone
# Install nvm
curl -o- https://raw.githubusercontent.com/nvm-sh/nvm/v0.39.7/install.sh | bash
# Install correct node version
cd ./extensions/ql-vscode
nvm install
# Build the extension
cd ~/work-gh/mrva/vscode-codeql/extensions/ql-vscode
npm install
npm run build
#+END_SRC
In the container
#+BEGIN_SRC sh
# Install extension
cd /work-gh/mrva/vscode-codeql/dist
/bin/code-server --force --install-extension vscode-codeql-*.vsix
#+END_SRC
- Capture the state of this container and create a new image from it.
#+BEGIN_SRC sh
docker ps
# Check id column. Use it below.
docker commit 2f3df413ae3b code-server-initialized:0.1.24
# Keep the sha
# sha256:1b382a721d8f3892ed22861701f19d3ed4b42a2db8d6d96b6f89fcb6e9c4161e
docker kill 2f3df413ae3b
# Make sure the image tag matches the sha
docker inspect code-server-initialized:0.1.24 |grep Id
# Run the image and check content
docker run --rm -d -p 9080:9080 --name test-code-server-codeql \
code-server-initialized:0.1.24
#+END_SRC
Again connect to it at http://localhost:9080/?folder=/home/coder, password is =mrva=.
- Push this container
#+BEGIN_SRC sh
# Common
export CSI_TARGET=code-server-initialized:0.1.24
# Push container
docker tag ${CSI_TARGET} ghcr.io/hohn/${CSI_TARGET}
docker push ghcr.io/hohn/${CSI_TARGET}
#+END_SRC
- Test the registry image
#+BEGIN_SRC sh
# Test pushed container
docker pull ghcr.io/hohn/${CSI_TARGET}
docker run --rm -d -p 9080:9080 --name test-code-server-codeql\
ghcr.io/hohn/${CSI_TARGET}
#+END_SRC
In the container, inside the running vs code:
- Check the plugin version number via the command
: codeql: copy version information

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{
"codeQL.runningQueries.numberOfThreads": 2,
"codeQL.cli.executablePath": "/opt/codeql/codeql"
}

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# This is the compose configuration used to build / prepopulate the containers for
# a demo.
services:
# XX: new container to add
# hepc:
# ## image: ghcr.io/hohn/hepc-container:0.1.24
# build:
# context: .
# dockerfile: ./containers/dbsdata/Dockerfile
# container_name: dbssvc
# volumes:
# - dbsdata:/data/mrvacommander/dbstore-data
# networks:
# - backend
dbssvc:
## image: ghcr.io/hohn/dbsdata-container:0.1.24
build:
context: ./containers/dbsdata
dockerfile: Dockerfile
container_name: dbssvc
volumes:
- dbsdata:/data/mrvacommander/dbstore-data
networks:
- backend
dbstore:
image: minio/minio:RELEASE.2024-06-11T03-13-30Z
container_name: dbstore
ports:
- "9000:9000"
- "9001:9001"
env_file:
- path: .env.container
required: true
command: server /data/mrvacommander/dbstore-data --console-address ":9001"
depends_on:
- dbssvc
volumes:
- dbsdata:/data/mrvacommander/dbstore-data
networks:
- backend
client-ghmrva:
## image: ghcr.io/hohn/client-ghmrva-container:0.1.24
build:
context: .
dockerfile: ./containers/ghmrva/Dockerfile
network_mode: "service:server" # Share the 'server' network namespace
environment:
- SERVER_URL=http://localhost:8080 # 'localhost' now refers to 'server'
code-server:
## image: ghcr.io/hohn/code-server-initialized:0.1.24
build:
context: ./containers/vscode
dockerfile: Dockerfile
ports:
- "9080:9080"
environment:
- PASSWORD=mrva
rabbitmq:
image: rabbitmq:3-management
hostname: rabbitmq
container_name: rabbitmq
volumes:
- ./init/rabbitmq/rabbitmq.conf:/etc/rabbitmq/rabbitmq.conf:ro
- ./init/rabbitmq/definitions.json:/etc/rabbitmq/definitions.json:ro
ports:
- "5672:5672"
- "15672:15672"
healthcheck:
test: rabbitmq-diagnostics check_port_connectivity
interval: 30s
timeout: 30s
retries: 10
networks:
- backend
server:
build:
context: .
dockerfile: ./containers/server/Dockerfile
command: [ '--mode=container', '--loglevel=debug' ]
container_name: server
stop_grace_period: 1s
ports:
# - "8081:8080" # host:container for proxy
- "8080:8080" # host:container
depends_on:
- rabbitmq
- dbstore
- artifactstore
env_file:
- path: ./.env.container
required: true
networks:
- backend
artifactstore:
image: minio/minio:RELEASE.2024-06-11T03-13-30Z
container_name: artifactstore
ports:
- "19000:9000" # host:container
- "19001:9001"
env_file:
- path: ./.env.container
required: true
command: server /data --console-address ":9001"
volumes:
# The artifactstore is only populated at runtime so there is no need
# for Docker storage; a directory is fine.
- ./qpstore-data:/data
networks:
- backend
agent:
## image: ghcr.io/hohn/mrva-agent:0.1.24
build:
context: .
dockerfile: ./containers/agent/Dockerfile
command: [ '--loglevel=debug' ]
container_name: agent
depends_on:
- rabbitmq
- dbstore
- artifactstore
env_file:
- path: ./.env.container
required: true
networks:
- backend
networks:
backend:
driver: bridge
volumes:
dbsdata:

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services:
dbssvc:
# ./containers/dbsdata/Dockerfile
image: ghcr.io/hohn/dbsdata-container:0.1.24
command: tail -f /dev/null # Keep the container running
# volumes:
# - /qldb # Directory inside the container that contains the data
volumes:
- dbsdata:/data
container_name: dbssvc
networks:
- backend
dbstore:
image: minio/minio:RELEASE.2024-06-11T03-13-30Z
container_name: dbstore
ports:
- "9000:9000"
- "9001:9001"
env_file:
- path: .env.container
required: true
command: server /data/mrvacommander/dbstore-data --console-address ":9001"
depends_on:
- dbssvc
# volumes_from:
# - dbsdata # Use the volumes from dbsdata container
volumes:
- dbsdata:/data/mrvacommander/dbstore-data
networks:
- backend
client-ghmrva:
# ./containers/ghmrva/Dockerfile
image: ghcr.io/hohn/client-ghmrva-container:0.1.24
network_mode: "service:server" # Share the 'server' network namespace
environment:
- SERVER_URL=http://localhost:8080 # 'localhost' now refers to 'server'
code-server:
# ./containers/vscode/Dockerfile
image: ghcr.io/hohn/code-server-initialized:0.1.24
ports:
- "9080:9080"
# XX: Include codeql binary in code-server (if it's not there already)
environment:
- PASSWORD=mrva
# XX: new container to add
# hepc:
# # ./containers/hepc/Dockerfile
# image: ghcr.io/hohn/hepc-container:0.1.24
# container_name: hepc
# command: hepc-serve /data-path --console-address ":9011"
#
# networks:
# - backend
rabbitmq:
image: rabbitmq:3-management
hostname: rabbitmq
container_name: rabbitmq
volumes:
- ./init/rabbitmq/rabbitmq.conf:/etc/rabbitmq/rabbitmq.conf:ro
- ./init/rabbitmq/definitions.json:/etc/rabbitmq/definitions.json:ro
ports:
- "5672:5672"
- "15672:15672"
healthcheck:
test: rabbitmq-diagnostics check_port_connectivity
interval: 30s
timeout: 30s
retries: 10
networks:
- backend
server:
# ./containers/server/Dockerfile
image: ghcr.io/hohn/mrva-server:0.1.24
command: [ '--mode=container', '--loglevel=debug' ]
container_name: server
stop_grace_period: 1s
depends_on:
- rabbitmq
- dbstore
- artifactstore
env_file:
- path: ./.env.container
required: true
networks:
- backend
artifactstore:
image: minio/minio:RELEASE.2024-06-11T03-13-30Z
container_name: artifactstore
ports:
- "19000:9000" # host:container
- "19001:9001"
env_file:
- path: ./.env.container
required: true
command: server /data --console-address ":9001"
volumes:
# The artifactstore is only populated at runtime so there is no need
# for Docker storage; a directory is fine.
- ./qpstore-data:/data
networks:
- backend
agent:
# ./containers/agent/Dockerfile
image: ghcr.io/hohn/mrva-agent:0.1.24
command: [ '--loglevel=debug' ]
container_name: agent
depends_on:
- rabbitmq
- dbstore
- artifactstore
env_file:
- path: ./.env.container
required: true
networks:
- backend
networks:
backend:
driver: bridge
volumes:
dbsdata:

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services:
rabbitmq:
image: rabbitmq:3-management
hostname: rabbitmq
container_name: rabbitmq
volumes:
- ./init/rabbitmq/rabbitmq.conf:/etc/rabbitmq/rabbitmq.conf:ro
- ./init/rabbitmq/definitions.json:/etc/rabbitmq/definitions.json:ro
ports:
- "5672:5672"
- "15672:15672"
networks:
- backend
healthcheck:
test: rabbitmq-diagnostics check_port_connectivity
interval: 30s
timeout: 30s
retries: 10
server:
build:
context: .
dockerfile: ./cmd/server/Dockerfile
command: [ '--mode=container', '--loglevel=debug' ]
container_name: server
stop_grace_period: 1s
ports:
# - "8081:8080" # host:container for proxy
- "8080:8080" # host:container
depends_on:
- rabbitmq
- dbstore
- artifactstore
networks:
- backend
env_file:
- path: ./.env.container
required: true
dbstore:
image: minio/minio:RELEASE.2024-06-11T03-13-30Z
container_name: dbstore
ports:
- "9000:9000"
- "9001:9001"
env_file:
- path: .env.container
required: true
command: server /data --console-address ":9001"
volumes:
- ./dbstore-data:/data
networks:
- backend
artifactstore:
image: minio/minio:RELEASE.2024-06-11T03-13-30Z
container_name: artifactstore
ports:
- "19000:9000" # host:container
- "19001:9001"
env_file:
- path: ./.env.container
required: true
command: server /data --console-address ":9001"
volumes:
- ./qpstore-data:/data
networks:
- backend
agent:
build:
context: .
dockerfile: ./cmd/agent/Dockerfile
command: [ '--loglevel=debug' ]
container_name: agent
depends_on:
- rabbitmq
- dbstore
- artifactstore
env_file:
- path: ./.env.container
required: true
networks:
- backend
networks:
backend:
driver: bridge

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{
"users": [
{
"name": "user",
"password": "password",
"tags": "administrator"
}
],
"vhosts": [
{
"name": "/"
}
],
"queues": [
{
"name": "tasks",
"vhost": "/",
"durable": false,
"persistent": false,
"arguments": {
"x-queue-type": "classic"
}
},
{
"name": "results",
"vhost": "/",
"durable": false,
"persistent": false,
"arguments": {
"x-queue-type": "classic"
}
}
],
"permissions": [
{
"user": "user",
"vhost": "/",
"configure": ".*",
"write": ".*",
"read": ".*"
}
]
}

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management.load_definitions = /etc/rabbitmq/definitions.json

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#!/bin/bash
# Configuration
MINIO_ALIAS="qldbminio"
MINIO_URL="http://localhost:9000"
MINIO_ROOT_USER="user"
MINIO_ROOT_PASSWORD="mmusty8432"
QL_DB_BUCKET_NAME="qldb"
# Check for MinIO client
if ! command -v mc &> /dev/null
then
echo "MinIO client (mc) not found."
exit 1
fi
# Configure MinIO client
mc alias set $MINIO_ALIAS $MINIO_URL $MINIO_ROOT_USER $MINIO_ROOT_PASSWORD
# Create qldb bucket
mc mb $MINIO_ALIAS/$QL_DB_BUCKET_NAME
# Upload the two sample DBs with new names
mc cp cmd/server/codeql/dbs/google/flatbuffers/google_flatbuffers_db.zip \
$MINIO_ALIAS/$QL_DB_BUCKET_NAME/google\$flatbuffers.zip
mc cp cmd/server/codeql/dbs/psycopg/psycopg2/psycopg_psycopg2_db.zip \
$MINIO_ALIAS/$QL_DB_BUCKET_NAME/psycopg\$psycopg2.zip
# Check new disk use
du -k dbstore-data

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#!/bin/bash
# Configuration
MINIO_ALIAS="qpstore"
MINIO_URL="http://localhost:19000"
MINIO_ROOT_USER="user"
MINIO_ROOT_PASSWORD="mmusty8432"
BUCKET_NAME="qpstore"
# Check for MinIO client
if ! command -v mc &> /dev/null
then
echo "MinIO client (mc) not found. "
fi
# Configure MinIO client
mc alias set $MINIO_ALIAS $MINIO_URL $MINIO_ROOT_USER $MINIO_ROOT_PASSWORD
# Create ql db bucket
mc mb $MINIO_ALIAS/$BUCKET_NAME

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{"version":"1","format":"xl-single","id":"58d5db34-d197-4f90-893d-33e81a3d2717","xl":{"version":"3","this":"c5bebf97-11c4-4ee9-af61-dc1f965737e3","sets":[["c5bebf97-11c4-4ee9-af61-dc1f965737e3"]],"distributionAlgo":"SIPMOD+PARITY"}}

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