Docker definition imports and modifications from mrvacommander

.env.container

@@ -0,0 +1,12 @@
+MRVA_RABBITMQ_HOST=rabbitmq
+MRVA_RABBITMQ_PORT=5672
+MRVA_RABBITMQ_USER=user
+MRVA_RABBITMQ_PASSWORD=password
+MINIO_ROOT_USER=user
+MINIO_ROOT_PASSWORD=mmusty8432
+ARTIFACT_MINIO_ENDPOINT=artifactstore:9000
+ARTIFACT_MINIO_ID=${MINIO_ROOT_USER}
+ARTIFACT_MINIO_SECRET=${MINIO_ROOT_PASSWORD}
+QLDB_MINIO_ENDPOINT=dbstore:9000
+QLDB_MINIO_ID=${MINIO_ROOT_USER}
+QLDB_MINIO_SECRET=${MINIO_ROOT_PASSWORD}

.gitattributes

@@ -0,0 +1,3 @@
+*.zip filter=lfs diff=lfs merge=lfs -text
+*.blob filter=lfs diff=lfs merge=lfs -text
+*.tar filter=lfs diff=lfs merge=lfs -text

.gitignore

@@ -0,0 +1,45 @@
+# vscode project dir
+.vscode/
+
+# idea project dir
+.idea/
+
+# Scratch space
+scratch/
+
+#
+# Binaries for programs and plugins
+*.exe
+*.exe~
+*.dll
+*.so
+*.dylib
+
+# Test binary, built with `go test -c`
+*.test
+
+# Output of the go coverage tool, specifically when used with LiteIDE
+*.out
+
+# Go workspace file
+go.work
+go.work.sum
+
+# env file
+.env
+venv/
+venv-*/
+*.egg-info
+__pycache__
+README.html
+ChangeLog
+notes/*.html
+
+# Make timestamp files
+mk.*
+
+# temporaries
+*.tmp
+
+# Mac OS
+.DS_Store

LICENSE

@@ -0,0 +1,202 @@
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Makefile

@@ -0,0 +1,55 @@
+all: server agent
+
+.phony: view
+
+view: README.html
+	open $<
+
+html: README.html
+
+%.html: %.md
+	pandoc --toc=true --standalone $< --out $@
+
+# Build the qldbtools container image
+dbt: mk.client-qldbtools-container
+mk.client-qldbtools-container:
+	cd client/containers/qldbtools && \
+		docker build -t client-qldbtools-container:0.1.24 .
+	touch $@
+
+# Run a shell in the container with the qldbtools
+dbt-run: mk.client-qldbtools-container
+	docker run --rm -it client-qldbtools-container:0.1.24 /bin/bash
+
+# Run one of the scripts in the container as check
+dbt-check: mk.client-qldbtools-container
+	docker run --rm -it client-qldbtools-container:0.1.24 mc-db-initial-info
+
+dbt-push: mk.dbt-push
+mk.dbt-push: mk.client-qldbtools-container
+	docker tag client-qldbtools-container:0.1.24 ghcr.io/hohn/client-qldbtools-container:0.1.24 
+	docker push ghcr.io/hohn/client-qldbtools-container:0.1.24
+	touch $@
+
+server:
+	cd cmd/server && GOOS=linux GOARCH=arm64 go build
+
+agent:
+	cd cmd/agent && GOOS=linux GOARCH=arm64 go build
+
+fullbuild:
+	cd cmd/server && GOOS=linux GOARCH=arm64 go build -a
+
+sendsubmit:
+	cd tools && sh ./submit-request.curl
+
+# Requires
+#		go install github.com/golangci/golangci-lint/cmd/golangci-lint@latest
+lint:
+	golangci-lint run cmd/... pkg/...
+
+deps:
+	godepgraph -maxlevel 4 -nostdlib  -i github.com/minio/minio-go ./cmd/server | dot -Tpdf > deps-server.pdf && open deps-server.pdf
+
+depa:
+	godepgraph -maxlevel 4 -nostdlib  -i github.com/minio/minio-go ./cmd/agent | dot -Tpdf > deps-agent.pdf && open deps-agent.pdf

README.md

@@ -0,0 +1,192 @@
+# Overview
+
+TODO diagram
+
+TODO Style notes
+- NO package init() functions
+- Dynamic behaviour must be explicit
+ 
+
+## Client CodeQL Database Selector
+Separate from the server's downloading of databases, a client-side interface is needed to generate the `databases.json` file. This
+
+1.  must be usable from the shell
+2.  must be interactive (Python, Jupyter)
+3.  is session based to allow iterations on selection / narrowing
+4.  must be queryable. There is no need to reinvent sql / dataframes
+
+Python with dataframes is ideal for this; the project is in `client/`.
+
+## Reverse proxy
+For testing, replay flows using mitmweb.  This is faster and simpler than using
+gh-mrva or the VS Code plugin.
+
+-   Set up the virtual environment and install tools
+
+        python3.11 -m venv venv
+        source venv/bin/activate
+        pip install mitmproxy
+
+For intercepting requests:
+
+1.  Start mitmproxy to listen on port 8080 and forward requests to port 8081, with
+    web interface
+
+        mitmweb --mode reverse:http://localhost:8081 -p 8080
+
+1.  Change `server` ports in `docker-compose.yml` to 
+
+        ports:
+        - "8081:8080" # host:container
+
+1.  Start the containers.
+
+1.  Submit requests.
+
+3.  Save the flows for later replay.
+
+One such session is in `tools/mitmweb-flows`; it can be loaded to replay the
+requests:
+
+1.  start `mitmweb --mode reverse:http://localhost:8081 -p 8080`
+2.  `file` > `open` > `tools/mitmweb-flows`
+3.  replay at least the submit, status, and download requests
+
+## Cross-compile server on host, run it in container 
+These are simple steps using a single container.
+
+1.  build server on host
+
+        GOOS=linux GOARCH=arm64 go build
+
+2.  build docker image
+
+        cd cmd/server
+        docker build -t server-image .
+
+3.  Start container with shared directory
+
+    ```sh
+    docker run -it \
+           -v   /Users/hohn/work-gh/mrva/mrvacommander:/mrva/mrvacommander \
+           server-image
+    ```
+
+4.  Run server in container
+
+        cd /mrva/mrvacommander/cmd/server/ && ./server
+
+## Using docker-compose
+### Steps to build and run the server
+
+Steps to build and run the server in a multi-container environment set up by
+docker-compose. 
+
+1.  Built the server-image, above
+
+1.  Build server on host
+
+        cd ~/work-gh/mrva/mrvacommander/cmd/server/
+        GOOS=linux GOARCH=arm64 go build
+
+1.  Start the containers
+
+        cd ~/work-gh/mrva/mrvacommander/
+        docker-compose down
+        docker-compose up -d
+    
+4.  Run server in its container
+
+        cd ~/work-gh/mrva/mrvacommander/
+        docker exec -it server bash
+        cd /mrva/mrvacommander/cmd/server/ 
+        ./server -loglevel=debug -mode=container
+
+1.  Test server from the host via
+
+        cd ~/work-gh/mrva/mrvacommander/tools
+        sh ./request_16-Jun-2024_11-33-16.curl
+
+1.  Follow server logging via
+
+        cd ~/work-gh/mrva/mrvacommander
+        docker-compose up -d
+        docker-compose logs -f server
+
+1.  Completely rebuild all containers.  Useful when running into docker errors
+
+        cd ~/work-gh/mrva/mrvacommander
+        docker-compose up --build
+
+1.  Start the server containers and the desktop/demo containers
+
+        cd ~/work-gh/mrva/mrvacommander/
+        docker-compose down --remove-orphans
+        docker-compose -f docker-compose-demo.yml up -d
+
+1.  Test server via remote client by following the steps in [gh-mrva](https://github.com/hohn/gh-mrva/blob/connection-redirect/README.org#compacted-edit-run-debug-cycle)
+
+### Some general docker-compose commands
+
+2.  Get service status
+
+        docker-compose ps
+        
+3.  Stop services
+
+        docker-compose down
+        
+4.  View all logs
+
+        docker-compose logs
+
+5.  check containers from server container
+
+        docker exec -it server bash
+        curl -I http://rabbitmq:15672
+
+### Use the minio ql database db
+
+1.  Web access via
+
+        open http://localhost:9001/login
+
+    username / password are in `docker-compose.yml` for now.  The ql db listing 
+    will be at
+
+        http://localhost:9001/browser/qldb
+
+1.  Populate the database by running
+
+        ./populate-dbstore.sh
+        
+    from the host.
+
+1.  The names in the bucket use the `owner_repo` format for now,
+    e.g. `google_flatbuffers_db.zip`.
+    TODO This will be enhanced to include other data later
+
+1.  Test Go's access to the dbstore -- from the host -- via
+
+        cd ./test
+        go test -v
+
+    This should produce
+
+        === RUN   TestDBListing
+        dbstore_test.go:44: Object Key: google_flatbuffers_db.zip
+        dbstore_test.go:44: Object Key: psycopg_psycopg2_db.zip
+
+### Use the minio query pack db
+
+1.  Web access via
+
+        open http://localhost:19001/login
+
+    username / password are in `docker-compose.yml` for now.  The ql db listing 
+    will be at
+
+        http://localhost:19001/browser/qpstore
+
+    
+### To run Use the minio query pack db

README.org

@@ -0,0 +1,25 @@
+* containers
+  1. start the containers
+     #+BEGIN_SRC sh 
+       cd ~/work-gh/mrva/mrva-docker/
+       docker-compose down
+       docker ps
+       docker-compose -f docker-compose-demo.yml up -d 
+     #+END_SRC
+  2. View all logs
+     : docker-compose logs
+  3. follow all logs
+     : docker-compose logs -f
+  4. Follow server logging via
+     #+BEGIN_SRC sh 
+       cd ~/work-gh/mrva/mrvacommander
+       docker-compose up -d
+       docker-compose logs -f server
+     #+END_SRC
+  5. Use gh-mrva container to send request via cli
+     XX: [[file:~/work-gh/mrva/mrvacommander/notes/cli-end-to-end-detailed.org::*Run MRVA from command line][Run MRVA from command line]]
+     #+BEGIN_SRC sh 
+       docker exec -it mrva-docker-client-ghmrva-1 bash
+
+     #+END_SRC
+

containers/agent/Dockerfile

@@ -0,0 +1,56 @@
+FROM golang:1.22 AS builder
+
+# Set the working directory inside the container
+WORKDIR /app
+
+# Copy the host directory containing the git clone to the container
+COPY mrvaagent.tmp /app/mrvaagent
+
+# Set the environment variables for Go modules
+ENV GO111MODULE=on
+ENV CGO_ENABLED=0
+
+# Build the project
+WORKDIR /app/mrvaagent
+RUN go mod tidy && go build -o /app/mrvaagent-binary
+
+# # Download dependencies
+# RUN go mod download
+
+# Create a runtime container
+FROM ubuntu:24.10 as runner
+ENV DEBIAN_FRONTEND=noninteractive
+
+# Build argument for CodeQL version, defaulting to the latest release
+ARG CODEQL_VERSION=latest
+
+# Install packages
+RUN apt-get update && apt-get install --no-install-recommends --assume-yes \
+    unzip \
+    curl \
+    ca-certificates \
+    default-jdk
+
+# If the version is 'latest', lsget the latest release version from GitHub, unzip the bundle into /opt, and delete the archive
+RUN if [ "$CODEQL_VERSION" = "latest" ]; then \
+    CODEQL_VERSION=$(curl -s https://api.github.com/repos/github/codeql-cli-binaries/releases/latest | grep '"tag_name"' | sed -E 's/.*"([^"]+)".*/\1/'); \
+    fi && \
+    echo "Using CodeQL version $CODEQL_VERSION" && \
+    curl -L "https://github.com/github/codeql-cli-binaries/releases/download/$CODEQL_VERSION/codeql-linux64.zip" -o /tmp/codeql.zip && \
+    unzip /tmp/codeql.zip -d /opt && \
+    rm /tmp/codeql.zip && \
+    chmod -R +x /opt/codeql
+
+# Set environment variables for CodeQL
+ENV CODEQL_CLI_PATH=/opt/codeql/codeql
+
+# Set environment variable for CodeQL for `codeql database analyze` support on ARM
+# This env var has no functional effect on CodeQL when running on x86_64 linux
+ENV CODEQL_JAVA_HOME=/usr
+
+# Copy the built binary from the builder stage
+COPY --from=builder /app/mrvaagent-binary /usr/local/bin/mrvaagent
+
+# Run the agent with the default mode set to container
+ENTRYPOINT ["/usr/local/bin/mrvaagent"]
+

containers/agent/Makefile

@@ -0,0 +1,32 @@
+all: mk.mrvaagent
+
+mrvaagent.tmp:
+	rm -fR mrvaagent.tmp
+	cp -r  ../../../mrvaagent mrvaagent.tmp
+
+MAG_TARGET := mrva-agent:0.1.24
+mag: mk.mrvaagent
+mk.mrvaagent: mrvaagent.tmp
+	docker build --no-cache -t ${MAG_TARGET} .
+	touch $@
+
+magserve: mag
+	docker run --env-file ../../.env.container --rm -it ${MAG_TARGET} /bin/bash
+
+clean:
+	-docker rmi -f ${MAG_TARGET}
+	-rm mrvaagent
+
+mag-push: mk.mag-push
+mk.mag-push: mk.mrvaagent
+	docker tag ${MAG_TARGET} ghcr.io/hohn/${MAG_TARGET}
+	docker push ghcr.io/hohn/${MAG_TARGET}
+	touch $@
+
+mag-test:
+	docker pull ghcr.io/hohn/${MAG_TARGET}
+	docker run --env-file ../../.env.container \
+	--name test-mrva-agent \
+	--rm -it ghcr.io/hohn/${MAG_TARGET} \
+	sh
+

containers/agent/README.org

@@ -0,0 +1,25 @@
+* agent image setup
+  - build container
+    #+BEGIN_SRC sh 
+      # Build the container via
+      cd ~/work-gh/mrva/mrva-docker/containers/agent/
+      make mk.mrvaagent
+
+      # Run the container in standalone mode via
+      cd ~/work-gh/mrva/mrva-docker/containers/agent/
+      make magserve
+    #+END_SRC
+
+  - Push this container
+    #+BEGIN_SRC sh
+      # Push container
+      cd ~/work-gh/mrva/mrva-docker/containers/agent/
+      make mk.mag-push
+    #+END_SRC
+
+  - Test the registry image
+    #+BEGIN_SRC sh
+      # Test pushed container
+      make mag-test
+    #+END_SRC
+    

containers/dbsdata/Dockerfile

@@ -0,0 +1,7 @@
+# Use a minimal base image
+FROM busybox
+
+COPY dbsdata_backup.tar /
+
+# Just run sh if this container is ever started
+CMD ["sh"]

containers/dbsdata/README.org

@@ -0,0 +1,78 @@
+* MRVA cli tools container
+  These instructions are from the original mrvacommander.  This container will be
+  deprecated, so these instructions should be used in the mrvacommander context.
+
+  #+BEGIN_SRC sh 
+    # Run the raw container assembly
+    cd ~/work-gh/mrva/mrvacommander/
+    docker-compose -f docker-compose-demo-build.yml up -d
+
+    # Use the following commands to populate the mrvacommander database storage
+    cd ~/work-gh/mrva/mrvacommander/client/qldbtools 
+    mkdir -p scratch 
+    source venv/bin/activate
+
+    ./bin/mc-db-initial-info ~/work-gh/mrva/mrva-open-source-download > scratch/db-info-1.csv
+
+    ./bin/mc-db-refine-info < scratch/db-info-1.csv > scratch/db-info-2.csv
+
+    ./bin/mc-db-unique cpp < scratch/db-info-2.csv > scratch/db-info-3.csv
+
+    ./bin/mc-db-generate-selection -n 11 \
+                                   scratch/vscode-selection.json \
+                                   scratch/gh-mrva-selection.json \
+                                   < scratch/db-info-3.csv 
+
+    # Several seconds start-up time; fast db population
+    ./bin/mc-db-populate-minio -n 11 < scratch/db-info-3.csv
+
+    # While the containers are running, this will show minio's storage.  The zip files
+    # are split into part.* and xl.meta by minio.  Use the web interface to see real
+    # names. 
+    docker exec dbstore ls -R /data/mrvacommander/
+
+    # Open browser to see the file listing
+    open http://localhost:9001/browser/qldb
+
+    # list the volumes
+    docker volume ls |grep dbs
+    docker volume inspect mrvacommander_dbsdata
+
+    # Persist volume using container
+    cd ~/work-gh/mrva/mrvacommander/demo/containers/dbsdata
+    # Use mrvacommander_dbsdata to access the compose cluster
+    # EITHER
+    # Get the data as tar file from the image using container
+    rm -f dbsdata_backup.tar
+    docker run --rm \
+           -v mrvacommander_dbsdata:/data \
+           -v $(pwd):/backup \
+           busybox sh -c "tar cf /backup/dbsdata_backup.tar  /data"
+    # OR
+    # Use gnu tar on host.  The macos tar adds extended attributes
+    # brew install gnu-tar
+    rm -f dbsdata_backup.tar && gtar cf dbsdata_backup.tar data/
+
+    # Build container with the tarball
+    cd ~/work-gh/mrva/mrvacommander/demo/containers/dbsdata
+    docker build -t dbsdata-container:0.1.24 .
+    docker image ls | grep dbs
+
+    # check container contents
+    docker run -it dbsdata-container:0.1.24 /bin/sh
+    docker run -it dbsdata-container:0.1.24 ls data/qldb
+
+    # Tag the dbstore backing container
+    docker inspect dbsdata-container:0.1.24 |grep Id
+    docker tag dbsdata-container:0.1.24 ghcr.io/hohn/dbsdata-container:0.1.24
+
+    # Push the pre-populated image
+    docker push ghcr.io/hohn/dbsdata-container:0.1.24
+
+    # Check the tagged image
+    docker run -it ghcr.io/hohn/dbsdata-container:0.1.24 ls data/qldb
+
+    # Shut down the container assembly
+    docker-compose -f docker-compose-demo-build.yml down
+  #+END_SRC
+

containers/ghmrva/Dockerfile

@@ -0,0 +1,64 @@
+# ######################
+# Use an official Golang image as the base image
+FROM golang:1.22 AS builder
+
+# Set the working directory inside the container
+WORKDIR /work-gh/mrva/gh-mrva
+
+# Clone the repository
+RUN git clone https://github.com/hohn/gh-mrva.git . &&\
+    git checkout hohn-0.1.24-demo
+
+# Download dependencies
+RUN go mod download
+
+# Build the Go binary
+RUN go build .
+
+# ######################
+# Provide codeql and java
+# 
+FROM ubuntu:24.10 as runner
+ENV DEBIAN_FRONTEND=noninteractive
+
+# Build argument for CodeQL version, defaulting to the latest release
+ARG CODEQL_VERSION=latest
+
+# Install packages
+RUN apt-get update && apt-get install --no-install-recommends --assume-yes \
+    unzip \
+    curl \
+    ca-certificates \
+    default-jdk
+
+# If the version is 'latest', get the latest release version from GitHub, unzip
+# the bundle into /opt, and delete the archive
+RUN if [ "$CODEQL_VERSION" = "latest" ]; then \
+    CODEQL_VERSION=$(curl -s https://api.github.com/repos/github/codeql-cli-binaries/releases/latest | grep '"tag_name"' | sed -E 's/.*"([^"]+)".*/\1/'); \
+    fi && \
+    echo "Using CodeQL version $CODEQL_VERSION" && \
+    curl -L "https://github.com/github/codeql-cli-binaries/releases/download/$CODEQL_VERSION/codeql-linux64.zip" -o /tmp/codeql.zip && \
+    unzip /tmp/codeql.zip -d /opt && \
+    rm /tmp/codeql.zip && \
+    chmod -R +x /opt/codeql
+
+# Set environment variables for CodeQL
+ENV CODEQL_CLI_PATH=/opt/codeql/codeql
+
+# Set environment variable for CodeQL for `codeql database analyze` support on ARM
+# This env var has no functional effect on CodeQL when running on x86_64 linux
+ENV CODEQL_JAVA_HOME=/usr
+
+# ######################
+
+# Set the working directory inside the final image
+WORKDIR /app
+
+# Copy the binary from the builder stage
+COPY --from=builder /work-gh/mrva/gh-mrva/gh-mrva /usr/local/bin/gh-mrva
+
+# Put CodeQL on the PATH
+ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/codeql
+
+# Run forever
+CMD ["tail", "-f", "/dev/null"]

containers/ghmrva/Makefile

@@ -0,0 +1,13 @@
+ghm: mk.client-ghmrva-container
+mk.client-ghmrva-container:
+	docker build -t client-ghmrva-container:0.1.24 .
+	touch $@
+
+ghm-push: mk.ghm-push
+mk.ghm-push: mk.client-ghmrva-container
+	docker tag client-ghmrva-container:0.1.24 ghcr.io/hohn/client-ghmrva-container:0.1.24 
+	docker push ghcr.io/hohn/client-ghmrva-container:0.1.24 
+	touch $@
+
+ghm-run:
+	docker run --rm -it ghcr.io/hohn/client-ghmrva-container:0.1.24 /bin/bash

containers/ghmrva/README.org

@@ -0,0 +1,16 @@
+* MRVA cli tools container
+  Set up / run:
+  #+BEGIN_SRC sh 
+    # Build
+    cd ~/work-gh/mrva/mrvacommander/client/containers/ghmrva/
+    make ghm
+    # Run
+    docker run -ti  client-ghmrva-container:0.1.24 /bin/bash
+
+    # In the container
+    gh-mrva -h
+    codeql -h
+
+    # Push
+    make ghm-push
+  #+END_SRC

containers/hepc/Dockerfile

@@ -0,0 +1,30 @@
+# Use a Python 3.11 image as the base
+FROM python:3.11-slim
+
+# Install git
+RUN apt-get update && apt-get install -y git
+
+# Create the required directory structure
+RUN mkdir -p /work-gh/mrva/
+
+# Change to the directory and clone the repository
+WORKDIR /work-gh/mrva/
+RUN git clone https://github.com/hohn/mrvacommander.git && \
+    cd mrvacommander && \
+    git checkout hohn-0.1.24-demo
+
+# Change to the client directory
+WORKDIR /work-gh/mrva/mrvacommander/client/qldbtools/
+
+# We're in a container, so use pip globally -- no virtual env
+RUN pip install --upgrade pip
+
+# Install the required Python packages from requirements.txt
+RUN pip install --no-cache-dir -r requirements.txt
+
+# Install qldbtools
+RUN pip install .
+
+# Run forever
+CMD ["tail", "-f", "/dev/null"]
+

containers/hepc/codeql-dbs/db-collection-mixed/metadata.json

@@ -0,0 +1,23 @@
+{"git_branch": "HEAD", "git_commit_id": "2b41915dac8966e95f9e63638d30769b0d69ad68", "git_repo": "aircrack-ng", "ingestion_datetime_utc": "2024-06-07 16:57:47.683012+00:00", "result_url": "http://hepc/db-collection-py/aircrack-ng-aircrack-ng-ctsj-41ebbe.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.17.4", "projname": "aircrack-ng/aircrack-ng"}
+{"git_branch": "HEAD", "git_commit_id": "8b399e9f51701b34f2f3c9375e637e6fffc642b7", "git_repo": "Serial-Studio", "ingestion_datetime_utc": "2023-10-01T15:18:43.503672671Z", "result_url": "http://hepc/db-collection-py/Serial-Studio-Serial-Studio-ctsj-2b2721.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.12.0", "projname": "Serial-Studio/Serial-Studio"}
+{"git_branch": "HEAD", "git_commit_id": "9a9308fd5477d2a44f4e491d5a712546d4a2b3e4", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-07-22 13:30:21.681180+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-0189aa.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.18.0", "projname": "bulk-builder/bulk-builder"}
+{"git_branch": "HEAD", "git_commit_id": "34412555665923bc07d43ce970e9d81be3795de7", "git_repo": "UEFITool", "ingestion_datetime_utc": "2024-07-04 19:00:38.543297+00:00", "result_url": "http://hepc/db-collection-py/UEFITool-UEFITool-ctsj-ee2d3c.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.17.6", "projname": "UEFITool/UEFITool"}
+{"git_branch": "HEAD", "git_commit_id": "00aa56f5257060304d41f09651c6ab58ee6104d6", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-07-18 14:12:52.904410+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-0c6575.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-python", "tool_version": "2.18.0", "projname": "bulk-builder/bulk-builder"}
+{"git_branch": "HEAD", "git_commit_id": "e4bffa0a7450e1abd9f4df9565728ae18d86cfd2", "git_repo": "attrs", "ingestion_datetime_utc": "2024-07-18 22:34:57.795427+00:00", "result_url": "http://hepc/db-collection-py/attrs-attrs-ctsj-e2c939.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-python", "tool_version": "2.18.0", "projname": "attrs/attrs"}
+{"git_branch": "HEAD", "git_commit_id": "9620901afce56f720e856aca600951c9b61a9460", "git_repo": "apprise", "ingestion_datetime_utc": "2024-07-22 22:26:48.720348+00:00", "result_url": "http://hepc/db-collection-py/apprise-apprise-ctsj-3f4a4e.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-python", "tool_version": "2.18.0", "projname": "apprise/apprise"}
+{"git_branch": "HEAD", "git_commit_id": "c38e6c8cfba28980aea8f895c71b376e8a5155d5", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2022-04-16T12:45:56.739003883Z", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-0d6cf6.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.8.5", "projname": "bulk-builder/bulk-builder"}
+{"git_branch": "HEAD", "git_commit_id": "18f6be580b12dc406ef356b2cd65f47c24fce63e", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-07-19 05:46:23.392157+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-0d667f.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-python", "tool_version": "2.18.0", "projname": "bulk-builder/bulk-builder"}
+{"git_branch": "HEAD", "git_commit_id": "a587921bac074b1bd1b0a0a5536587660a9b954e", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-07-19 16:13:39.094478+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-0a6352.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-java", "tool_version": "2.18.0", "projname": "bulk-builder/bulk-builder"}
+{"git_branch": "HEAD", "git_commit_id": "9b361c7ff497d57651856650667aece8230fab6d", "git_repo": "BentoML", "ingestion_datetime_utc": "2024-07-24 02:17:07.095690+00:00", "result_url": "http://hepc/db-collection-py/BentoML-BentoML-ctsj-d6963d.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-python", "tool_version": "2.18.0", "projname": "BentoML/BentoML"}
+{"git_branch": "HEAD", "git_commit_id": "8b399e9f51701b34f2f3c9375e637e6fffc642b7", "git_repo": "Serial-Studio", "ingestion_datetime_utc": "2023-10-01T15:18:43.503672671Z", "result_url": "http://hepc/db-collection-py/Serial-Studio-Serial-Studio-ctsj-2b2721.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.12.0", "projname": "Serial-Studio/Serial-Studio"}
+{"git_branch": "HEAD", "git_commit_id": "53ad2da1a8e6e79e0986ddfa3a45e1db6fdd491c", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-05-14 02:24:19.208812+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-01864e.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-python", "tool_version": "2.17.0", "projname": "bulk-builder/bulk-builder"}
+{"git_branch": "HEAD", "git_commit_id": "db8f1a7930c6b5826357646746337dafc983f953", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2023-11-22 01:18:25.079473+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-099796.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-python", "tool_version": "2.15.2", "projname": "bulk-builder/bulk-builder"}
+{"git_branch": "HEAD", "git_commit_id": "f8df9dd749a549dec20aa286a7639ba04190faab", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-05-12 16:39:28.854142+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-0d7b69.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.17.0", "projname": "bulk-builder/bulk-builder"}
+{"git_branch": "HEAD", "git_commit_id": "b5274976cb0a792d05d541a749c0adcd9d20062d", "git_repo": "behave", "ingestion_datetime_utc": "2024-05-11 19:20:51.916333+00:00", "result_url": "http://hepc/db-collection-py/behave-behave-ctsj-b297b5.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-python", "tool_version": "2.17.2", "projname": "behave/behave"}
+{"git_branch": "HEAD", "git_commit_id": "4c825c198df470506b0f84da0b25b3b385150dcb", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-04-25 03:26:03.986270+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-035849.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.17.0", "projname": "bulk-builder/bulk-builder"}
+{"git_branch": "HEAD", "git_commit_id": "a8b8ff0acc6fcc629d08a3a9952f83be56a9a3c3", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-05-03 13:30:48.829134+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-051a5c.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-java", "tool_version": "2.17.0", "projname": "bulk-builder/bulk-builder"}
+{"git_branch": "HEAD", "git_commit_id": "9ef05731e7c6cbad2e897faa7c526558eed3ceaa", "git_repo": "aws-sam-cli", "ingestion_datetime_utc": "2024-05-14 01:03:18.130142+00:00", "result_url": "http://hepc/db-collection-py/aws-sam-cli-aws-sam-cli-ctsj-b7f561.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-python", "tool_version": "2.17.2", "projname": "aws-sam-cli/aws-sam-cli"}
+{"git_branch": "HEAD", "git_commit_id": "16865390a653ceaeabe354df1b37e4a775161a70", "git_repo": "aws-sdk-pandas", "ingestion_datetime_utc": "2024-05-13 15:13:31.853042+00:00", "result_url": "http://hepc/db-collection-py/aws-sdk-pandas-aws-sdk-pandas-ctsj-2b7750.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-python", "tool_version": "2.17.2", "projname": "aws-sdk-pandas/aws-sdk-pandas"}
+{"git_branch": "HEAD", "git_commit_id": "093856995af0811d3ebbe8c179b8febf4ae706f0", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-03-20 14:18:02.500590+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-103a8a.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-python", "tool_version": "2.16.4", "projname": "bulk-builder/bulk-builder"}
+{"git_branch": "HEAD", "git_commit_id": "0573e6f96637f08fb4cb85e0552f0622d36827d4", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-01-24 09:21:05.977294+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-0cdf2f.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-python", "tool_version": "2.15.5", "projname": "bulk-builder/bulk-builder"}
+{"git_branch": "HEAD", "git_commit_id": "93314995a5ee2217d58c3d9cbcbdef5df6c34566", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-05-09 05:29:25.243273+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-0a35a1.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.17.0", "projname": "bulk-builder/bulk-builder"}

containers/hepc/codeql-dbs/filter.py

@@ -0,0 +1,30 @@
+import os
+import json
+
+# Input and output file paths
+input_file = "metadata.json"
+output_file = "filtered_metadata.json"
+
+# Read the metadata file line by line
+with open(input_file, "r") as infile:
+    lines = infile.readlines()
+
+filtered_lines = []
+
+for line in lines:
+    try:
+        # Parse the line as JSON
+        data = json.loads(line.strip())
+        # Extract the tail of the result_url
+        result_url_tail = os.path.basename(data.get("result_url", ""))
+        # Check if a file with the same name exists in the current directory
+        if os.path.isfile(result_url_tail):
+            filtered_lines.append(line)
+    except json.JSONDecodeError:
+        print(f"Skipping invalid JSON line: {line.strip()}")
+
+# Write the filtered lines to the output file
+with open(output_file, "w") as outfile:
+    outfile.writelines(filtered_lines)
+
+print(f"Filtered metadata saved to {output_file}")

containers/hepc/codeql-dbs/metadata.json

@@ -0,0 +1,251 @@
+{"git_branch": "HEAD", "git_commit_id": "2b41915dac8966e95f9e63638d30769b0d69ad68", "git_repo": "aircrack-ng", "ingestion_datetime_utc": "2024-06-07 16:57:47.683012+00:00", "result_url": "http://hepc/db-collection-py/aircrack-ng-aircrack-ng-ctsj-41ebbe.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.17.4", "projname": "aircrack-ng/aircrack-ng"}
+{"git_branch": "HEAD", "git_commit_id": "b44d288f423ede0fc7cdbf92d07a7772cd727de4", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-07-12 01:41:01.162736+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-41932e.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.17.6", "projname": "bulk-builder/bulk-builder"}
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+{"git_branch": "HEAD", "git_commit_id": "93314995a5ee2217d58c3d9cbcbdef5df6c34566", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-05-09 05:29:25.243273+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-0a35a1.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.17.0", "projname": "bulk-builder/bulk-builder"}
+{"git_branch": "HEAD", "git_commit_id": "c89763a989745a5fa7e8ce74ccd80d533949eec5", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-05-07 15:52:50.923544+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-becd00.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.17.0", "projname": "bulk-builder/bulk-builder"}
+{"git_branch": "HEAD", "git_commit_id": "d5870bb7a5d512c17c92a4e4fe7e9a8e7c8c3528", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2023-09-01 23:32:45.559237+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-db35c4.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.14.2", "projname": "bulk-builder/bulk-builder"}
+{"git_branch": "HEAD", "git_commit_id": "9db6418230edb47f2032ea5474119bf4f96ea422", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-04-25 06:38:33.310978+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-cbabeb.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-python", "tool_version": "2.17.0", "projname": "bulk-builder/bulk-builder"}
+{"git_branch": "HEAD", "git_commit_id": "9733a08e93a23d36233f58981670355d27d55153", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-05-09 07:26:11.101135+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-b624cf.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.17.0", "projname": "bulk-builder/bulk-builder"}
+{"git_branch": "HEAD", "git_commit_id": "b274a950fcd05b19f0f3f4df295fb053d81d7f5c", "git_repo": "bulk-builder", "ingestion_datetime_utc": "2024-05-07 15:52:45.817045+00:00", "result_url": "http://hepc/db-collection-py/bulk-builder-bulk-builder-ctsj-d94ffd.zip", "tool_id": "9f2f9642-febb-4435-9204-fb50bbd43de4", "tool_name": "codeql-cpp", "tool_version": "2.17.0", "projname": "bulk-builder/bulk-builder"}

containers/qldbtools/Dockerfile

@@ -0,0 +1,30 @@
+# Use a Python 3.11 image as the base
+FROM python:3.11-slim
+
+# Install git
+RUN apt-get update && apt-get install -y git
+
+# Create the required directory structure
+RUN mkdir -p /work-gh/mrva/
+
+# Change to the directory and clone the repository
+WORKDIR /work-gh/mrva/
+RUN git clone https://github.com/hohn/mrvacommander.git && \
+    cd mrvacommander && \
+    git checkout hohn-0.1.24-demo
+
+# Change to the client directory
+WORKDIR /work-gh/mrva/mrvacommander/client/qldbtools/
+
+# We're in a container, so use pip globally -- no virtual env
+RUN pip install --upgrade pip
+
+# Install the required Python packages from requirements.txt
+RUN pip install --no-cache-dir -r requirements.txt
+
+# Install qldbtools
+RUN pip install .
+
+# Run forever
+CMD ["tail", "-f", "/dev/null"]
+

containers/qldbtools/Makefile

@@ -0,0 +1,25 @@
+DBT_TARGET := client-qldbtools-container:0.1.24
+
+# Build the qldbtools container image
+dbt: mk.client-qldbtools-container
+mk.client-qldbtools-container:
+	docker build -t ${DBT_TARGET} .
+	touch $@
+
+# Run a shell in the container with the qldbtools
+dbt-run: dbt
+	docker run --rm -it ${DBT_TARGET} /bin/bash
+
+# Run one of the scripts in the container as check.  Should exit with error. 
+dbt-check: dbt
+	docker run --rm -it ${DBT_TARGET} mc-db-initial-info
+
+dbt-push: mk.dbt-push
+mk.dbt-push: dbt
+	docker tag ${DBT_TARGET} ghcr.io/hohn/${DBT_TARGET} 
+	docker push ghcr.io/hohn/${DBT_TARGET}
+	touch $@
+
+dbt-test:
+	docker pull ghcr.io/hohn/${DBT_TARGET}
+	docker run --rm -it --name test-dbt-server ghcr.io/hohn/${DBT_TARGET} sh

containers/qldbtools/README.org

@@ -0,0 +1,13 @@
+* MRVA python tools container
+  Set up Docker image with python 3.11 and pip and the qldbtools.  The targets are
+  in the =Makefile=; most important are
+
+  #+BEGIN_SRC sh 
+    # Build
+    make dbt
+
+    # Check
+    make dbt-check
+
+  #+END_SRC
+  

containers/server/Dockerfile

@@ -0,0 +1,56 @@
+FROM golang:1.22 AS builder
+
+# Set the working directory inside the container
+WORKDIR /app
+
+# Copy the host directory containing the git clone to the container
+COPY mrvaserver.tmp /app/mrvaserver
+
+# Set the environment variables for Go modules
+ENV GO111MODULE=on
+ENV CGO_ENABLED=0
+
+# Build the project
+WORKDIR /app/mrvaserver
+RUN go mod tidy && go build -o /app/mrvaserver-binary
+
+# # Download dependencies
+# RUN go mod download
+
+# Create a runtime container
+FROM ubuntu:24.10 as runner
+ENV DEBIAN_FRONTEND=noninteractive
+
+# Build argument for CodeQL version, defaulting to the latest release
+ARG CODEQL_VERSION=latest
+
+# Install packages
+RUN apt-get update && apt-get install --no-install-recommends --assume-yes \
+    unzip \
+    curl \
+    ca-certificates \
+    default-jdk
+
+# If the version is 'latest', lsget the latest release version from GitHub, unzip the bundle into /opt, and delete the archive
+RUN if [ "$CODEQL_VERSION" = "latest" ]; then \
+    CODEQL_VERSION=$(curl -s https://api.github.com/repos/github/codeql-cli-binaries/releases/latest | grep '"tag_name"' | sed -E 's/.*"([^"]+)".*/\1/'); \
+    fi && \
+    echo "Using CodeQL version $CODEQL_VERSION" && \
+    curl -L "https://github.com/github/codeql-cli-binaries/releases/download/$CODEQL_VERSION/codeql-linux64.zip" -o /tmp/codeql.zip && \
+    unzip /tmp/codeql.zip -d /opt && \
+    rm /tmp/codeql.zip && \
+    chmod -R +x /opt/codeql
+
+# Set environment variables for CodeQL
+ENV CODEQL_CLI_PATH=/opt/codeql/codeql
+
+# Set environment variable for CodeQL for `codeql database analyze` support on ARM
+# This env var has no functional effect on CodeQL when running on x86_64 linux
+ENV CODEQL_JAVA_HOME=/usr
+
+# Copy the built binary from the builder stage
+COPY --from=builder /app/mrvaserver-binary /usr/local/bin/mrvaserver
+
+# Run the server with the default mode set to container
+ENTRYPOINT ["/usr/local/bin/mrvaserver"]
+CMD ["--mode=container"]

containers/server/Makefile

@@ -0,0 +1,29 @@
+all: mk.mrvaserver
+
+mrvaserver.tmp:
+	rm -fR mrvaserver.tmp
+	cp -r  ../../../mrvaserver mrvaserver.tmp
+
+MSER_TARGET := mrva-server:0.1.24
+mser: mk.mrvaserver
+mk.mrvaserver: mrvaserver.tmp
+	docker build -t ${MSER_TARGET} .
+	touch $@
+
+mserserve: mser
+	docker run --env-file ../../.env.container --rm -it ${MSER_TARGET} /bin/bash
+
+clean:
+	-docker rmi -f ${MSER_TARGET}
+	-rm mrvaserver
+
+mser-push: mk.mser-push
+mk.mser-push: mk.mrvaserver
+	docker tag ${MSER_TARGET} ghcr.io/hohn/${MSER_TARGET}
+	docker push ghcr.io/hohn/${MSER_TARGET}
+	touch $@
+
+mser-test:
+	docker pull ghcr.io/hohn/${MSER_TARGET}
+	docker run --rm -it --name test-mrva-server-codeql ghcr.io/hohn/${MSER_TARGET} sh
+

containers/server/README.org

@@ -0,0 +1,35 @@
+* server image setup
+  - build container
+    #+BEGIN_SRC sh 
+      # Build the container via
+      cd ~/work-gh/mrva/mrva-docker/containers/server/
+      docker build --no-cache -t mrva-server:0.1.24 .
+
+      # Run the container in standalone mode via
+      cd ~/work-gh/mrva/mrva-docker/containers/server/
+      docker run -d mrva-server:0.1.24
+
+      docker run --env-file ../../.env.container --rm -it             \
+             -it mrva-server:0.1.24 --mode=container --loglevel=debug \
+             /bin/bash
+    #+END_SRC
+
+  - Push this container
+    #+BEGIN_SRC sh
+      # Push container
+      docker tag mrva-server:0.1.24 ghcr.io/hohn/mrva-server:0.1.24
+      docker push ghcr.io/hohn/mrva-server:0.1.24
+    #+END_SRC
+
+  - Test the registry image
+    #+BEGIN_SRC sh
+      # Test pushed container
+      docker pull ghcr.io/hohn/mrva-server:0.1.24
+      docker run                                      \
+             --env-file ../../.env.container          \
+             --name test-mrva-server                  \
+             --rm -it ghcr.io/hohn/mrva-server:0.1.24 \
+             --mode=container --loglevel=debug        \
+             /bin/bash
+    #+END_SRC
+    

containers/server/README.org~

@@ -0,0 +1,2 @@
+* server image setup
+  

containers/server/mcconfig.toml

@@ -0,0 +1,6 @@
+[commander]
+[logger]
+[queue]
+[storage]
+StartingID = 54673
+[runner]

containers/vscode/Dockerfile

@@ -0,0 +1,67 @@
+FROM codercom/code-server:4.92.2-debian
+
+# ======================
+# Pre-install a custom JDK for this platform and redirect CodeQL to it
+
+USER root
+
+ENV DEBIAN_FRONTEND=noninteractive
+
+# Install packages
+RUN apt-get update && apt-get install --no-install-recommends --assume-yes \
+    ca-certificates                                 \
+    curl                                            \
+    default-jdk                                     \
+    git                                             \
+    libcurl4-openssl-dev                            \
+    libssl-dev                                      \
+    python3                                         \
+    python3-dev                                     \
+    unzip
+
+# Build argument for CodeQL version, defaulting to the latest release
+ARG CODEQL_VERSION=latest
+
+# If the version is 'latest', get the latest release version from GitHub, unzip
+# the bundle into /opt, and delete the archive
+RUN if [ "$CODEQL_VERSION" = "latest" ]; then \
+    CODEQL_VERSION=$(curl -s https://api.github.com/repos/github/codeql-cli-binaries/releases/latest | grep '"tag_name"' | sed -E 's/.*"([^"]+)".*/\1/'); \
+    fi && \
+    echo "Using CodeQL version $CODEQL_VERSION" && \
+    curl -L "https://github.com/github/codeql-cli-binaries/releases/download/$CODEQL_VERSION/codeql-linux64.zip" -o /tmp/codeql.zip && \
+    unzip /tmp/codeql.zip -d /opt && \
+    rm /tmp/codeql.zip && \
+    chmod -R +x /opt/codeql
+
+# ======================
+# Install code-server
+USER coder
+
+# Set environment variables
+ENV PASSWORD mrva
+
+# Install VS Code extensions as user root -- globally
+RUN code-server --install-extension ms-python.python \
+    && code-server --install-extension esbenp.prettier-vscode \
+    && code-server --install-extension GitHub.vscode-codeql
+
+# Expose the port that Code Server runs on
+EXPOSE 9080
+
+# Point CodeQL to the java binary for this platform
+ENV CODEQL_JAVA_HOME=/usr
+
+# Add
+#   codeQl.cli.executablePath
+# to user settings.
+# This is in addition to the environment variable CODEQL_JAVA_HOME which has no
+# effect on the plugin
+USER root
+COPY ./settings.json  /home/coder/.local/share/code-server/User/
+RUN chown -R coder:coder /home/coder/.local/share/code-server/
+
+# Start Code Server
+ENTRYPOINT ["dumb-init", "code-server", "--bind-addr", "0.0.0.0:9080", "."]
+
+# Run as the coder user
+USER coder

containers/vscode/README.org

@@ -0,0 +1,120 @@
+* MRVA VS Code server container
+  On the host:
+
+    #+BEGIN_SRC sh 
+      # Build the container via 
+      cd ~/work-gh/mrva/mrva-docker/containers/vscode/
+      docker build --no-cache -t code-server-initialized:0.1.24 .
+
+      # Run the container in standalone mode via 
+      cd ~/work-gh/mrva/mrva-docker/containers/vscode/
+      docker run -v ~/work-gh/mrva/vscode-codeql:/work-gh/mrva/vscode-codeql \
+             -d -p 9080:9080 code-server-initialized:0.1.24 
+    #+END_SRC
+
+  - Connect to it at http://localhost:9080/?folder=/home/coder, password is =mrva=.
+
+  Inside the container:
+
+  - Setup inside the container
+    #+BEGIN_SRC shell
+      cd 
+      export PATH=/opt/codeql:$PATH
+      codeql pack init qldemo
+      cd qldemo
+      codeql pack add codeql/python-all@1.0.6
+    #+END_SRC
+
+  - Create a new file =qldemo/simple.ql= with this query.  Open it in VS Code.
+    The plugin will download the CodeQL binaries (but never use them -- the
+    configuration redirects)
+    #+BEGIN_SRC sh 
+      cd
+      cat > qldemo/simple.ql <<eof
+      import python
+      select 42
+      eof
+    #+END_SRC
+
+  - Create database.
+    #+BEGIN_SRC sh 
+      cd ~/qldemo
+
+      cat > short.py <<EOF
+      print('hello world')
+      EOF
+      export PATH=/opt/codeql:$PATH  
+      codeql database create --language=python -s . -v short-db
+    #+END_SRC
+
+  - Set the database as default and run the query =simple.ql=
+
+  - Add the customized VS Code plugin
+    On the host
+    #+BEGIN_SRC sh 
+      cd ~/work-gh/mrva/vscode-codeql
+      git checkout mrva-standalone
+
+      # Install nvm
+      curl -o- https://raw.githubusercontent.com/nvm-sh/nvm/v0.39.7/install.sh | bash
+
+      # Install correct node version 
+      cd ./extensions/ql-vscode
+      nvm install
+
+      # Build the extension
+      cd ~/work-gh/mrva/vscode-codeql/extensions/ql-vscode
+      npm install
+      npm run build
+    #+END_SRC
+
+    In the container
+    #+BEGIN_SRC sh 
+      # Install extension
+      cd /work-gh/mrva/vscode-codeql/dist
+
+      /bin/code-server --force --install-extension vscode-codeql-*.vsix
+    #+END_SRC
+
+  - Capture the state of this container and create a new image from it.
+
+    #+BEGIN_SRC sh 
+      docker ps
+      # Check id column.  Use it below.
+      docker commit 2f3df413ae3b code-server-initialized:0.1.24
+      # Keep the sha
+      # sha256:1b382a721d8f3892ed22861701f19d3ed4b42a2db8d6d96b6f89fcb6e9c4161e
+      docker kill 2f3df413ae3b
+
+      # Make sure the image tag matches the sha
+      docker inspect code-server-initialized:0.1.24 |grep Id
+
+      # Run the image and check content
+      docker run --rm -d -p 9080:9080 --name test-code-server-codeql \
+             code-server-initialized:0.1.24
+    #+END_SRC
+    Again connect to it at http://localhost:9080/?folder=/home/coder, password is =mrva=.
+
+  - Push this container
+    #+BEGIN_SRC sh 
+      # Common
+      export CSI_TARGET=code-server-initialized:0.1.24
+
+      # Push container
+      docker tag ${CSI_TARGET} ghcr.io/hohn/${CSI_TARGET}
+      docker push ghcr.io/hohn/${CSI_TARGET}
+    #+END_SRC
+
+  - Test the registry image
+    #+BEGIN_SRC sh 
+      # Test pushed container
+      docker pull ghcr.io/hohn/${CSI_TARGET}
+      docker run --rm -d -p 9080:9080 --name test-code-server-codeql\
+             ghcr.io/hohn/${CSI_TARGET}
+    #+END_SRC
+    In the container, inside the running vs code:
+    - Check the plugin version number via the command
+       : codeql: copy version information
+    
+
+

containers/vscode/settings.json

@@ -0,0 +1,4 @@
+{
+    "codeQL.runningQueries.numberOfThreads": 2,
+    "codeQL.cli.executablePath": "/opt/codeql/codeql"
+}

docker-compose-demo-build.yml

@@ -0,0 +1,141 @@
+# This is the compose configuration used to build / prepopulate the containers for
+# a demo.
+services:
+    # XX: new container to add
+    # hepc:
+    #     ## image: ghcr.io/hohn/hepc-container:0.1.24
+    #     build:
+    #         context: .
+    #         dockerfile: ./containers/dbsdata/Dockerfile
+    #     container_name: dbssvc
+    #     volumes:
+    #         - dbsdata:/data/mrvacommander/dbstore-data
+    #     networks:
+    #         - backend
+
+    dbssvc:
+        ## image: ghcr.io/hohn/dbsdata-container:0.1.24
+        build:
+            context: ./containers/dbsdata
+            dockerfile: Dockerfile
+        container_name: dbssvc
+        volumes:
+            - dbsdata:/data/mrvacommander/dbstore-data
+        networks:
+            - backend
+            
+    dbstore:
+        image: minio/minio:RELEASE.2024-06-11T03-13-30Z
+        container_name: dbstore
+        ports:
+            - "9000:9000"
+            - "9001:9001"
+        env_file:
+            - path: .env.container
+              required: true
+        command: server /data/mrvacommander/dbstore-data --console-address ":9001"
+        depends_on:
+            - dbssvc
+        volumes:
+            - dbsdata:/data/mrvacommander/dbstore-data
+        networks:
+            - backend
+            
+    client-ghmrva:
+        ## image: ghcr.io/hohn/client-ghmrva-container:0.1.24 
+        build:
+            context: .
+            dockerfile: ./containers/ghmrva/Dockerfile
+        network_mode: "service:server" # Share the 'server' network namespace
+        environment:
+            - SERVER_URL=http://localhost:8080  # 'localhost' now refers to 'server'
+            
+    code-server:
+        ## image: ghcr.io/hohn/code-server-initialized:0.1.24
+        build:
+            context: ./containers/vscode
+            dockerfile: Dockerfile
+        ports:
+            - "9080:9080"
+        environment:
+            - PASSWORD=mrva
+     
+    rabbitmq:
+        image: rabbitmq:3-management
+        hostname: rabbitmq
+        container_name: rabbitmq
+        volumes:
+            - ./init/rabbitmq/rabbitmq.conf:/etc/rabbitmq/rabbitmq.conf:ro
+            - ./init/rabbitmq/definitions.json:/etc/rabbitmq/definitions.json:ro
+        ports:
+            - "5672:5672"
+            - "15672:15672"
+        healthcheck:
+            test: rabbitmq-diagnostics check_port_connectivity
+            interval: 30s
+            timeout: 30s
+            retries: 10
+        networks:
+            - backend
+     
+    server:
+        build:
+            context: .
+            dockerfile: ./containers/server/Dockerfile
+        command: [ '--mode=container', '--loglevel=debug' ]
+        container_name: server
+        stop_grace_period: 1s
+        ports:
+            # - "8081:8080" # host:container for proxy
+            - "8080:8080" # host:container
+        depends_on:
+            - rabbitmq
+            - dbstore
+            - artifactstore
+        env_file:
+            - path: ./.env.container
+              required: true
+        networks:
+            - backend
+     
+    artifactstore:
+        image: minio/minio:RELEASE.2024-06-11T03-13-30Z
+        container_name: artifactstore
+        ports:
+            - "19000:9000" # host:container
+            - "19001:9001"
+        env_file:
+            - path: ./.env.container
+              required: true
+        command: server /data --console-address ":9001"
+        volumes:
+            # The artifactstore is only populated at runtime so there is no need
+            # for Docker storage; a directory is fine.
+            - ./qpstore-data:/data
+        networks:
+            - backend
+     
+    agent:
+        ## image: ghcr.io/hohn/mrva-agent:0.1.24
+        build:
+          context: .
+          dockerfile: ./containers/agent/Dockerfile
+        command: [ '--loglevel=debug' ]
+        container_name: agent
+        depends_on:
+            - rabbitmq
+            - dbstore
+            - artifactstore
+        env_file:
+            - path: ./.env.container
+              required: true
+        networks:
+            - backend
+   
+networks:
+    backend:
+        driver: bridge
+
+volumes:
+  dbsdata:
+

docker-compose-demo.yml

@@ -0,0 +1,130 @@
+services:
+    dbssvc:
+        # ./containers/dbsdata/Dockerfile
+        image: ghcr.io/hohn/dbsdata-container:0.1.24
+        command: tail -f /dev/null # Keep the container running            
+        # volumes:
+        #     - /qldb  # Directory inside the container that contains the data
+        volumes:
+            - dbsdata:/data
+        container_name: dbssvc
+        networks:
+            - backend
+
+    dbstore:
+        image: minio/minio:RELEASE.2024-06-11T03-13-30Z
+        container_name: dbstore
+        ports:
+            - "9000:9000"
+            - "9001:9001"
+        env_file:
+            - path: .env.container
+              required: true
+        command: server /data/mrvacommander/dbstore-data --console-address ":9001"
+        depends_on:
+            - dbssvc            
+        # volumes_from:
+        #     - dbsdata  # Use the volumes from dbsdata container
+        volumes:
+            - dbsdata:/data/mrvacommander/dbstore-data
+        networks:
+            - backend
+     
+    client-ghmrva:
+        # ./containers/ghmrva/Dockerfile
+        image: ghcr.io/hohn/client-ghmrva-container:0.1.24 
+        network_mode: "service:server" # Share the 'server' network namespace
+        environment:
+            - SERVER_URL=http://localhost:8080  # 'localhost' now refers to 'server'
+            
+    code-server:
+        # ./containers/vscode/Dockerfile
+        image: ghcr.io/hohn/code-server-initialized:0.1.24
+        ports:
+            - "9080:9080"
+        # XX: Include codeql binary in code-server (if it's not there already)
+        environment:
+            - PASSWORD=mrva
+     
+    # XX: new container to add
+    # hepc:
+    #     # ./containers/hepc/Dockerfile
+    #     image: ghcr.io/hohn/hepc-container:0.1.24
+    #     container_name: hepc
+    #     command: hepc-serve /data-path --console-address ":9011"
+    #    
+    #     networks:
+    #         - backend
+
+    rabbitmq:
+        image: rabbitmq:3-management
+        hostname: rabbitmq
+        container_name: rabbitmq
+        volumes:
+            - ./init/rabbitmq/rabbitmq.conf:/etc/rabbitmq/rabbitmq.conf:ro
+            - ./init/rabbitmq/definitions.json:/etc/rabbitmq/definitions.json:ro
+        ports:
+            - "5672:5672"
+            - "15672:15672"
+        healthcheck:
+          test: rabbitmq-diagnostics check_port_connectivity
+          interval: 30s
+          timeout: 30s
+          retries: 10
+        networks:
+            - backend
+     
+    server:
+        # ./containers/server/Dockerfile
+        image: ghcr.io/hohn/mrva-server:0.1.24
+        command: [ '--mode=container', '--loglevel=debug' ]
+        container_name: server
+        stop_grace_period: 1s
+        depends_on:
+            - rabbitmq
+            - dbstore
+            - artifactstore
+        env_file:
+            - path: ./.env.container
+              required: true
+        networks:
+            - backend
+     
+    artifactstore:
+        image: minio/minio:RELEASE.2024-06-11T03-13-30Z
+        container_name: artifactstore
+        ports:
+            - "19000:9000" # host:container
+            - "19001:9001"
+        env_file:
+            - path: ./.env.container
+              required: true
+        command: server /data --console-address ":9001"
+        volumes:
+            # The artifactstore is only populated at runtime so there is no need
+            # for Docker storage; a directory is fine.
+            - ./qpstore-data:/data
+        networks:
+            - backend
+     
+    agent:
+        # ./containers/agent/Dockerfile
+        image: ghcr.io/hohn/mrva-agent:0.1.24
+        command: [ '--loglevel=debug' ]
+        container_name: agent
+        depends_on:
+            - rabbitmq
+            - dbstore
+            - artifactstore
+        env_file:
+            - path: ./.env.container
+              required: true
+        networks:
+            - backend
+   
+networks:
+    backend:
+        driver: bridge
+
+volumes:
+    dbsdata:

docker-compose.yml

@@ -0,0 +1,89 @@
+services:
+
+  rabbitmq:
+    image: rabbitmq:3-management
+    hostname: rabbitmq
+    container_name: rabbitmq
+    volumes:
+      - ./init/rabbitmq/rabbitmq.conf:/etc/rabbitmq/rabbitmq.conf:ro
+      - ./init/rabbitmq/definitions.json:/etc/rabbitmq/definitions.json:ro
+    ports:
+      - "5672:5672"
+      - "15672:15672"
+    networks:
+      - backend
+    healthcheck:
+      test: rabbitmq-diagnostics check_port_connectivity
+      interval: 30s
+      timeout: 30s
+      retries: 10
+
+  server:
+    build:
+      context: .
+      dockerfile: ./cmd/server/Dockerfile
+    command: [ '--mode=container', '--loglevel=debug' ]
+    container_name: server
+    stop_grace_period: 1s
+    ports:
+      # - "8081:8080" # host:container for proxy
+      - "8080:8080" # host:container
+    depends_on:
+      - rabbitmq
+      - dbstore
+      - artifactstore
+    networks:
+      - backend
+    env_file:
+      - path: ./.env.container
+        required: true
+
+  dbstore:
+    image: minio/minio:RELEASE.2024-06-11T03-13-30Z
+    container_name: dbstore
+    ports:
+      - "9000:9000"
+      - "9001:9001"
+    env_file:
+      - path: .env.container
+        required: true
+    command: server /data --console-address ":9001"
+    volumes:
+      - ./dbstore-data:/data
+    networks:
+      - backend
+
+  artifactstore:
+    image: minio/minio:RELEASE.2024-06-11T03-13-30Z
+    container_name: artifactstore
+    ports:
+      - "19000:9000" # host:container
+      - "19001:9001"
+    env_file:
+      - path: ./.env.container
+        required: true
+    command: server /data --console-address ":9001"
+    volumes:
+      - ./qpstore-data:/data
+    networks:
+      - backend
+
+  agent:
+    build:
+      context: .
+      dockerfile: ./cmd/agent/Dockerfile
+    command: [ '--loglevel=debug' ]
+    container_name: agent
+    depends_on:
+      - rabbitmq
+      - dbstore
+      - artifactstore
+    env_file:
+      - path: ./.env.container
+        required: true
+    networks:
+      - backend
+
+networks:
+  backend:
+    driver: bridge

init/rabbitmq/definitions.json

@@ -0,0 +1,43 @@
+{
+    "users": [
+        {
+            "name": "user",
+            "password": "password",
+            "tags": "administrator"
+        }
+    ],
+    "vhosts": [
+        {
+            "name": "/"
+        }
+    ],
+    "queues": [
+        {
+            "name": "tasks",
+            "vhost": "/",
+            "durable": false,
+            "persistent": false,
+            "arguments": {
+                "x-queue-type": "classic"
+            }
+        },
+        {
+            "name": "results",
+            "vhost": "/",
+            "durable": false,
+            "persistent": false,
+            "arguments": {
+                "x-queue-type": "classic"
+            }
+        }
+    ],
+    "permissions": [
+        {
+            "user": "user",
+            "vhost": "/",
+            "configure": ".*",
+            "write": ".*",
+            "read": ".*"
+        }
+    ]
+}

init/rabbitmq/rabbitmq.conf

@@ -0,0 +1 @@
+management.load_definitions = /etc/rabbitmq/definitions.json

populate-dbstore.sh

@@ -0,0 +1,31 @@
+#!/bin/bash
+
+# Configuration
+MINIO_ALIAS="qldbminio"
+MINIO_URL="http://localhost:9000"
+MINIO_ROOT_USER="user"
+MINIO_ROOT_PASSWORD="mmusty8432"
+QL_DB_BUCKET_NAME="qldb"
+
+# Check for MinIO client
+if ! command -v mc &> /dev/null
+then
+    echo "MinIO client (mc) not found."
+    exit 1
+fi
+
+# Configure MinIO client
+mc alias set $MINIO_ALIAS $MINIO_URL $MINIO_ROOT_USER $MINIO_ROOT_PASSWORD
+
+# Create qldb bucket
+mc mb $MINIO_ALIAS/$QL_DB_BUCKET_NAME
+
+# Upload the two sample DBs with new names
+mc cp cmd/server/codeql/dbs/google/flatbuffers/google_flatbuffers_db.zip \
+    $MINIO_ALIAS/$QL_DB_BUCKET_NAME/google\$flatbuffers.zip
+
+mc cp cmd/server/codeql/dbs/psycopg/psycopg2/psycopg_psycopg2_db.zip \
+    $MINIO_ALIAS/$QL_DB_BUCKET_NAME/psycopg\$psycopg2.zip
+
+# Check new disk use
+du -k dbstore-data

populate-qpstore.sh

@@ -0,0 +1,20 @@
+#!/bin/bash
+
+# Configuration
+MINIO_ALIAS="qpstore"
+MINIO_URL="http://localhost:19000"
+MINIO_ROOT_USER="user"
+MINIO_ROOT_PASSWORD="mmusty8432"
+BUCKET_NAME="qpstore"
+
+# Check for MinIO client
+if ! command -v mc &> /dev/null
+then
+    echo "MinIO client (mc) not found.  "
+fi
+
+# Configure MinIO client
+mc alias set $MINIO_ALIAS $MINIO_URL $MINIO_ROOT_USER $MINIO_ROOT_PASSWORD
+
+# Create ql db bucket
+mc mb $MINIO_ALIAS/$BUCKET_NAME

qpstore-data/.minio.sys/format.json

@@ -0,0 +1 @@
+{"version":"1","format":"xl-single","id":"58d5db34-d197-4f90-893d-33e81a3d2717","xl":{"version":"3","this":"c5bebf97-11c4-4ee9-af61-dc1f965737e3","sets":[["c5bebf97-11c4-4ee9-af61-dc1f965737e3"]],"distributionAlgo":"SIPMOD+PARITY"}}