Taus cac5a8236e Python: Fix CLI integration tests ...

Two issues:

- Tests relying on existing query machinery (i.e. `import python`) were not resolving
  correctly due to a bad `qlpack.yml` file.
- The diagnostics output tests needed an updated import to account for their new location.

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..

repo_dir

Python: Copy Python extractor to codeql repo

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diagnostics.expected

Python: Copy Python extractor to codeql repo

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make_test.py

Python: Copy Python extractor to codeql repo

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query.expected

Python: Copy Python extractor to codeql repo

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query.ql

Python: Copy Python extractor to codeql repo

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test_diagnostics_output.py

Python: Fix CLI integration tests

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test.sh

Python: Copy Python extractor to codeql repo

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