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This commit ensures consistency among all of our qlpacks. Here are the
changes:
1. Ensure only modern references are used (codeql-{lang} is converted to
codeql/{lang}-all or codeql/{lang}-queries where appropriate).
2. Use consistent version numbers. All languages are at 0.0.2 except
javascript, which is 0.0.3.
3. Convert all `libraryPathDependencies` to `dependencies` with version
constraints
4. Dependencies from query packs to other packs are always `"*"` since
these dependencies are always from source and we should get the
latest.
5. Dependencies from codeql/{lang}-lib to codeql/{lang}-upgrades must
be strict since there is a tight connection between the libary
and its relevant upgrades.