One of the diffs look confusing but:
Previously parameter {2,3} where flagged, now parameter {1,2} are flagged.
Note that for command injection, the SystemCommandExecution is flagged
despite the test file claiming otherwise.
Some OK-style comments had to be moved to the following line, shifting line numbers.
In selected range also included the comments themselves.
Lastly, the result sets were reordered by the CLI in some cases.