Overlay: Add overlay annotations to Java & shared libraries

shared/util/codeql/util/AlertFiltering.qll

@@ -2,6 +2,8 @@
  * Provides the `restrictAlertsTo` extensible predicate to restrict alerts to specific source
  * locations, and the `AlertFilteringImpl` parameterized module to apply the filtering.
  */
+overlay[local?]
+module;
 
 private import codeql.util.Location
 

shared/util/codeql/util/Boolean.qll

@@ -1,4 +1,6 @@
 /** Provides the `Boolean` class. */
+overlay[local?]
+module;
 
 /**
  * A utility class that is equivalent to `boolean`.

shared/util/codeql/util/DenseRank.qll

@@ -2,6 +2,8 @@
  * Provides modules for computing dense `rank`s. See the `DenseRank` module
  * below for a more detailed explanation.
  */
+overlay[local?]
+module;
 
 /** Provides the input to `DenseRank`. */
 signature module DenseRankInputSig {

shared/util/codeql/util/Either.qll

@@ -1,4 +1,6 @@
 /** Provides a module for constructing a union `Either` type. */
+overlay[local?]
+module;
 
 /** A type with `toString`. */
 private signature class TypeWithToString {

shared/util/codeql/util/FilePath.qll

@@ -1,4 +1,6 @@
 /** Provides a utility for normalizing filepaths. */
+overlay[local?]
+module;
 
 /**
  * A filepath that should be normalized.

shared/util/codeql/util/FileSystem.qll

@@ -1,4 +1,6 @@
 /** Provides classes for working with files and folders. */
+overlay[local?]
+module;
 
 /** Provides the input specification of the files and folders implementation. */
 signature module InputSig {

shared/util/codeql/util/Location.qll

@@ -1,4 +1,6 @@
 /** Provides classes for working with locations. */
+overlay[local?]
+module;
 
 /**
  * A location as given by a file, a start line, a start column,

shared/util/codeql/util/Numbers.qll

@@ -2,6 +2,8 @@
  * Provides predicates for working with numeric values and their string
  * representations.
  */
+overlay[local?]
+module;
 
 /**
  * Gets the integer value of `binary` when interpreted as binary. `binary` must

shared/util/codeql/util/Option.qll

@@ -1,4 +1,6 @@
 /** Provides a module for constructing optional versions of types. */
+overlay[local?]
+module;
 
 /** A type with `toString`. */
 private signature class TypeWithToString {

shared/util/codeql/util/ReportStats.qll

@@ -1,6 +1,7 @@
 /**
  * Provides the `ReportStats` module for reporting database quality statistics.
  */
+overlay[local?]
 module;
 
 signature module StatsSig {

shared/util/codeql/util/Strings.qll

@@ -1,3 +1,6 @@
+overlay[local?]
+module;
+
 private import Numbers
 
 /**

shared/util/codeql/util/Unit.qll

@@ -1,4 +1,6 @@
 /** Provides the `Unit` class. */
+overlay[local?]
+module;
 
 /** The unit type. */
 private newtype TUnit = TMkUnit()

shared/util/codeql/util/Void.qll

@@ -1,4 +1,6 @@
 /** Provides the empty `Void` class. */
+overlay[local?]
+module;
 
 /** The empty void type. */
 private newtype TVoid = TMkVoid() { none() }

shared/util/codeql/util/suppression/AlertSuppression.qll

@@ -1,3 +1,6 @@
+overlay[local?]
+module;
+
 signature class AstNode {
   predicate hasLocationInfo(
     string filepath, int startline, int startcolumn, int endline, int endcolumn

shared/util/codeql/util/test/ExternalLocationPostProcessing.qll

@@ -6,6 +6,7 @@
  * VS Code, but prevents the "Location is outside of test directory" warning
  * when executed through `codeql test run`.
  */
+overlay[local?]
 module;
 
 external private predicate queryResults(string relation, int row, int column, string data);