diff --git a/Cargo.lock b/Cargo.lock
index 77be7b054ed..b6456c84106 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -84,9 +84,9 @@ dependencies = [
 
 [[package]]
 name = "anyhow"
-version = "1.0.99"
+version = "1.0.100"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b0674a1ddeecb70197781e945de4b3b8ffb61fa939a5597bcf48503737663100"
+checksum = "a23eb6b1614318a8071c9b2521f36b424b2c83db5eb3a0fead4a6c0809af6e61"
 
 [[package]]
 name = "argfile"
@@ -328,7 +328,7 @@ dependencies = [
  "chalk-derive 0.103.0",
  "chalk-ir 0.103.0",
  "ena",
- "indexmap 2.11.1",
+ "indexmap 2.11.4",
  "itertools 0.12.1",
  "petgraph",
  "rustc-hash 1.1.0",
@@ -351,9 +351,9 @@ dependencies = [
 
 [[package]]
 name = "clap"
-version = "4.5.47"
+version = "4.5.48"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7eac00902d9d136acd712710d71823fb8ac8004ca445a89e73a41d45aa712931"
+checksum = "e2134bb3ea021b78629caa971416385309e0131b351b25e01dc16fb54e1b5fae"
 dependencies = [
  "clap_builder",
  "clap_derive",
@@ -361,9 +361,9 @@ dependencies = [
 
 [[package]]
 name = "clap_builder"
-version = "4.5.47"
+version = "4.5.48"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "2ad9bbf750e73b5884fb8a211a9424a1906c1e156724260fdae972f31d70e1d6"
+checksum = "c2ba64afa3c0a6df7fa517765e31314e983f51dda798ffba27b988194fb65dc9"
 dependencies = [
  "anstream",
  "anstyle",
@@ -472,7 +472,7 @@ dependencies = [
  "serde",
  "serde_json",
  "serde_with",
- "toml 0.9.5",
+ "toml 0.9.7",
  "tracing",
  "tracing-flame",
  "tracing-subscriber",
@@ -557,9 +557,9 @@ checksum = "d0a5c400df2834b80a4c3327b3aad3a4c4cd4de0629063962b03235697506a28"
 
 [[package]]
 name = "darling"
-version = "0.20.11"
+version = "0.21.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fc7f46116c46ff9ab3eb1597a45688b6715c6e628b5c133e288e709a29bcb4ee"
+checksum = "9cdf337090841a411e2a7f3deb9187445851f91b309c0c0a29e05f74a00a48c0"
 dependencies = [
  "darling_core",
  "darling_macro",
@@ -567,9 +567,9 @@ dependencies = [
 
 [[package]]
 name = "darling_core"
-version = "0.20.11"
+version = "0.21.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0d00b9596d185e565c2207a0b01f8bd1a135483d02d9b7b0a54b11da8d53412e"
+checksum = "1247195ecd7e3c85f83c8d2a366e4210d588e802133e1e355180a9870b517ea4"
 dependencies = [
  "fnv",
  "ident_case",
@@ -581,9 +581,9 @@ dependencies = [
 
 [[package]]
 name = "darling_macro"
-version = "0.20.11"
+version = "0.21.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fc34b93ccb385b40dc71c6fceac4b2ad23662c7eeb248cf10d529b7e055b6ead"
+checksum = "d38308df82d1080de0afee5d069fa14b0326a88c14f15c5ccda35b4a6c414c81"
 dependencies = [
  "darling_core",
  "quote",
@@ -1059,13 +1059,14 @@ dependencies = [
 
 [[package]]
 name = "indexmap"
-version = "2.11.1"
+version = "2.11.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "206a8042aec68fa4a62e8d3f7aa4ceb508177d9324faf261e1959e495b7a1921"
+checksum = "4b0f83760fb341a774ed326568e19f5a863af4a952def8c39f9ab92fd95b88e5"
 dependencies = [
  "equivalent",
  "hashbrown 0.15.5",
  "serde",
+ "serde_core",
 ]
 
 [[package]]
@@ -1490,7 +1491,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "b4c5cc86750666a3ed20bdaf5ca2a0344f9c67674cae0515bec2da16fbaa47db"
 dependencies = [
  "fixedbitset",
- "indexmap 2.11.1",
+ "indexmap 2.11.4",
 ]
 
 [[package]]
@@ -1559,9 +1560,9 @@ dependencies = [
 
 [[package]]
 name = "quote"
-version = "1.0.40"
+version = "1.0.41"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1885c039570dc00dcb4ff087a89e185fd56bae234ddc7f056a945bf36467248d"
+checksum = "ce25767e7b499d1b604768e7cde645d14cc8584231ea6b295e9c9eb22c02e1d1"
 dependencies = [
  "proc-macro2",
 ]
@@ -1666,7 +1667,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "e876bb2c3e52a8d4e6684526a2d4e81f9d028b939ee4dc5dc775fe10deb44d59"
 dependencies = [
  "dashmap",
- "indexmap 2.11.1",
+ "indexmap 2.11.4",
  "la-arena",
  "ra_ap_cfg",
  "ra_ap_intern",
@@ -1708,7 +1709,7 @@ checksum = "ebffdc134eccabc17209d7760cfff7fd12ed18ab6e21188c5e084b97aa38504c"
 dependencies = [
  "arrayvec",
  "either",
- "indexmap 2.11.1",
+ "indexmap 2.11.4",
  "itertools 0.14.0",
  "ra_ap_base_db",
  "ra_ap_cfg",
@@ -1738,7 +1739,7 @@ dependencies = [
  "drop_bomb",
  "either",
  "fst",
- "indexmap 2.11.1",
+ "indexmap 2.11.4",
  "itertools 0.14.0",
  "la-arena",
  "ra-ap-rustc_abi",
@@ -1807,7 +1808,7 @@ dependencies = [
  "cov-mark",
  "either",
  "ena",
- "indexmap 2.11.1",
+ "indexmap 2.11.4",
  "itertools 0.14.0",
  "la-arena",
  "oorandom",
@@ -1845,7 +1846,7 @@ dependencies = [
  "crossbeam-channel",
  "either",
  "fst",
- "indexmap 2.11.1",
+ "indexmap 2.11.4",
  "itertools 0.14.0",
  "line-index",
  "memchr",
@@ -1947,7 +1948,7 @@ version = "0.0.301"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "45db9e2df587d56f0738afa89fb2c100ff7c1e9cbe49e07f6a8b62342832211b"
 dependencies = [
- "indexmap 2.11.1",
+ "indexmap 2.11.4",
  "ra_ap_intern",
  "ra_ap_paths",
  "ra_ap_span",
@@ -2106,7 +2107,7 @@ checksum = "6c174d6b9b7a7f54687df7e00c3e75ed6f082a7943a9afb1d54f33c0c12773de"
 dependencies = [
  "crossbeam-channel",
  "fst",
- "indexmap 2.11.1",
+ "indexmap 2.11.4",
  "nohash-hasher",
  "ra_ap_paths",
  "ra_ap_stdx",
@@ -2211,9 +2212,9 @@ dependencies = [
 
 [[package]]
 name = "regex"
-version = "1.11.2"
+version = "1.11.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "23d7fd106d8c02486a8d64e778353d1cffe08ce79ac2e82f540c86d0facf6912"
+checksum = "8b5288124840bee7b386bc413c487869b360b2b4ec421ea56425128692f2a82c"
 dependencies = [
  "aho-corasick",
  "memchr",
@@ -2223,9 +2224,9 @@ dependencies = [
 
 [[package]]
 name = "regex-automata"
-version = "0.4.10"
+version = "0.4.11"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6b9458fa0bfeeac22b5ca447c63aaf45f28439a709ccd244698632f9aa6394d6"
+checksum = "833eb9ce86d40ef33cb1306d8accf7bc8ec2bfea4355cbdebb3df68b40925cad"
 dependencies = [
  "aho-corasick",
  "memchr",
@@ -2316,7 +2317,7 @@ dependencies = [
  "crossbeam-utils",
  "hashbrown 0.15.5",
  "hashlink",
- "indexmap 2.11.1",
+ "indexmap 2.11.4",
  "intrusive-collections",
  "papaya",
  "parking_lot",
@@ -2414,10 +2415,11 @@ dependencies = [
 
 [[package]]
 name = "serde"
-version = "1.0.219"
+version = "1.0.228"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5f0e2c6ed6606019b4e29e69dbaba95b11854410e5347d525002456dbbb786b6"
+checksum = "9a8e94ea7f378bd32cbbd37198a4a91436180c5bb472411e48b5ec2e2124ae9e"
 dependencies = [
+ "serde_core",
  "serde_derive",
 ]
 
@@ -2443,10 +2445,19 @@ dependencies = [
 ]
 
 [[package]]
-name = "serde_derive"
-version = "1.0.219"
+name = "serde_core"
+version = "1.0.228"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5b0276cf7f2c73365f7157c8123c21cd9a50fbbd844757af28ca1f5925fc2a00"
+checksum = "41d385c7d4ca58e59fc732af25c3983b67ac852c1a25000afe1175de458b67ad"
+dependencies = [
+ "serde_derive",
+]
+
+[[package]]
+name = "serde_derive"
+version = "1.0.228"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "d540f220d3187173da220f885ab66608367b6574e925011a9353e4badda91d79"
 dependencies = [
  "proc-macro2",
  "quote",
@@ -2455,15 +2466,16 @@ dependencies = [
 
 [[package]]
 name = "serde_json"
-version = "1.0.143"
+version = "1.0.145"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d401abef1d108fbd9cbaebc3e46611f4b1021f714a0597a71f41ee463f5f4a5a"
+checksum = "402a6f66d8c709116cf22f558eab210f5a50187f702eb4d7e5ef38d9a7f1c79c"
 dependencies = [
- "indexmap 2.11.1",
+ "indexmap 2.11.4",
  "itoa",
  "memchr",
  "ryu",
  "serde",
+ "serde_core",
 ]
 
 [[package]]
@@ -2477,24 +2489,24 @@ dependencies = [
 
 [[package]]
 name = "serde_spanned"
-version = "1.0.0"
+version = "1.0.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "40734c41988f7306bb04f0ecf60ec0f3f1caa34290e4e8ea471dcd3346483b83"
+checksum = "5417783452c2be558477e104686f7de5dae53dba813c28435e0e70f82d9b04ee"
 dependencies = [
- "serde",
+ "serde_core",
 ]
 
 [[package]]
 name = "serde_with"
-version = "3.14.0"
+version = "3.14.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f2c45cd61fefa9db6f254525d46e392b852e0e61d9a1fd36e5bd183450a556d5"
+checksum = "c522100790450cf78eeac1507263d0a350d4d5b30df0c8e1fe051a10c22b376e"
 dependencies = [
  "base64",
  "chrono",
  "hex",
  "indexmap 1.9.3",
- "indexmap 2.11.1",
+ "indexmap 2.11.4",
  "schemars 0.9.0",
  "schemars 1.0.4",
  "serde",
@@ -2506,9 +2518,9 @@ dependencies = [
 
 [[package]]
 name = "serde_with_macros"
-version = "3.14.0"
+version = "3.14.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "de90945e6565ce0d9a25098082ed4ee4002e047cb59892c318d66821e14bb30f"
+checksum = "327ada00f7d64abaac1e55a6911e90cf665aa051b9a561c7006c157f4633135e"
 dependencies = [
  "darling",
  "proc-macro2",
@@ -2522,7 +2534,7 @@ version = "0.9.34+deprecated"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "6a8b1a1a2ebf674015cc02edccce75287f1a0130d394307b36743c2f5d504b47"
 dependencies = [
- "indexmap 2.11.1",
+ "indexmap 2.11.4",
  "itoa",
  "ryu",
  "serde",
@@ -2701,14 +2713,14 @@ dependencies = [
 
 [[package]]
 name = "toml"
-version = "0.9.5"
+version = "0.9.7"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "75129e1dc5000bfbaa9fee9d1b21f974f9fbad9daec557a521ee6e080825f6e8"
+checksum = "00e5e5d9bf2475ac9d4f0d9edab68cc573dc2fd644b0dba36b0c30a92dd9eaa0"
 dependencies = [
- "indexmap 2.11.1",
- "serde",
- "serde_spanned 1.0.0",
- "toml_datetime 0.7.0",
+ "indexmap 2.11.4",
+ "serde_core",
+ "serde_spanned 1.0.2",
+ "toml_datetime 0.7.2",
  "toml_parser",
  "toml_writer",
  "winnow",
@@ -2725,11 +2737,11 @@ dependencies = [
 
 [[package]]
 name = "toml_datetime"
-version = "0.7.0"
+version = "0.7.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "bade1c3e902f58d73d3f294cd7f20391c1cb2fbcb643b73566bc773971df91e3"
+checksum = "32f1085dec27c2b6632b04c80b3bb1b4300d6495d1e129693bdda7d91e72eec1"
 dependencies = [
- "serde",
+ "serde_core",
 ]
 
 [[package]]
@@ -2738,7 +2750,7 @@ version = "0.22.27"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "41fe8c660ae4257887cf66394862d21dbca4a6ddd26f04a3560410406a2f819a"
 dependencies = [
- "indexmap 2.11.1",
+ "indexmap 2.11.4",
  "serde",
  "serde_spanned 0.6.9",
  "toml_datetime 0.6.11",
@@ -2748,9 +2760,9 @@ dependencies = [
 
 [[package]]
 name = "toml_parser"
-version = "1.0.2"
+version = "1.0.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b551886f449aa90d4fe2bdaa9f4a2577ad2dde302c61ecf262d80b116db95c10"
+checksum = "4cf893c33be71572e0e9aa6dd15e6677937abd686b066eac3f8cd3531688a627"
 dependencies = [
  "winnow",
 ]
@@ -2763,9 +2775,9 @@ checksum = "5d99f8c9a7727884afe522e9bd5edbfc91a3312b36a77b5fb8926e4c31a41801"
 
 [[package]]
 name = "toml_writer"
-version = "1.0.2"
+version = "1.0.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fcc842091f2def52017664b53082ecbbeb5c7731092bad69d2c63050401dfd64"
+checksum = "d163a63c116ce562a22cda521fcc4d79152e7aba014456fb5eb442f6d6a10109"
 
 [[package]]
 name = "tracing"
@@ -2855,9 +2867,9 @@ dependencies = [
 
 [[package]]
 name = "tree-sitter-embedded-template"
-version = "0.23.2"
+version = "0.25.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "790063ef14e5b67556abc0b3be0ed863fb41d65ee791cf8c0b20eb42a1fa46af"
+checksum = "833d528e8fcb4e49ddb04d4d6450ddb8ac08f282a58fec94ce981c9c5dbf7e3a"
 dependencies = [
  "cc",
  "tree-sitter-language",
diff --git a/ruby/extractor/Cargo.toml b/ruby/extractor/Cargo.toml
index f4de37e8512..b6e1ae90119 100644
--- a/ruby/extractor/Cargo.toml
+++ b/ruby/extractor/Cargo.toml
@@ -8,15 +8,15 @@ edition = "2024"
 # When updating these dependencies, run `misc/bazel/3rdparty/update_cargo_deps.sh`
 [dependencies]
 tree-sitter = ">= 0.23.0"
-tree-sitter-embedded-template = "0.23.2"
+tree-sitter-embedded-template = "0.25.0"
 tree-sitter-ruby = "0.23.1"
 clap = { version = "4.5", features = ["derive"] }
 tracing = "0.1"
 tracing-subscriber = { version = "0.3.20", features = ["env-filter"] }
 rayon = "1.11.0"
-regex = "1.11.2"
+regex = "1.11.3"
 encoding = "0.2"
 lazy_static = "1.5.0"
-serde_json = "1.0.143"
+serde_json = "1.0.145"
 
 codeql-extractor = { path = "../../shared/tree-sitter-extractor" }
diff --git a/rust/ast-generator/Cargo.toml b/rust/ast-generator/Cargo.toml
index a5270923722..fcba71b696c 100644
--- a/rust/ast-generator/Cargo.toml
+++ b/rust/ast-generator/Cargo.toml
@@ -8,10 +8,10 @@ license = "MIT"
 [dependencies]
 ungrammar = "1.16.1"
 proc-macro2 = "1.0.101"
-quote = "1.0.40"
+quote = "1.0.41"
 either = "1.15.0"
 stdx = {package = "ra_ap_stdx", version = "0.0.301"}
 itertools = "0.14.0"
 mustache = "0.9.0"
-serde = { version = "1.0.219", features = ["derive"] }
-anyhow = "1.0.99"
+serde = { version = "1.0.228", features = ["derive"] }
+anyhow = "1.0.100"
diff --git a/rust/extractor/Cargo.toml b/rust/extractor/Cargo.toml
index 0f87bc22f9e..223d9dfc68c 100644
--- a/rust/extractor/Cargo.toml
+++ b/rust/extractor/Cargo.toml
@@ -6,8 +6,8 @@ license = "MIT"
 
 # When updating these dependencies, run `rust/update_cargo_deps.sh`
 [dependencies]
-anyhow = "1.0.99"
-clap = { version = "4.5.47", features = ["derive"] }
+anyhow = "1.0.100"
+clap = { version = "4.5.48", features = ["derive"] }
 figment = { version = "0.10.19", features = ["env", "yaml"] }
 num-traits = "0.2.19"
 ra_ap_base_db = "0.0.301"
@@ -25,8 +25,8 @@ ra_ap_parser = "0.0.301"
 ra_ap_span = "0.0.301"
 ra_ap_cfg = "0.0.301"
 ra_ap_intern = "0.0.301"
-serde = "1.0.219"
-serde_with = "3.14.0"
+serde = "1.0.228"
+serde_with = "3.14.1"
 triomphe = "0.1.14"
 argfile = "0.2.1"
 codeql-extractor = { path = "../../shared/tree-sitter-extractor" }
@@ -34,9 +34,9 @@ rust-extractor-macros = { path = "macros" }
 itertools = "0.14.0"
 glob = "0.3.3"
 chrono = { version = "0.4.42", features = ["serde"] }
-serde_json = "1.0.143"
+serde_json = "1.0.145"
 dunce = "1.0.5"
-toml = "0.9.5"
+toml = "0.9.7"
 tracing = "0.1.41"
 tracing-flame = "0.2.0"
 tracing-subscriber = "0.3.20"
diff --git a/rust/extractor/macros/Cargo.toml b/rust/extractor/macros/Cargo.toml
index 013ebd986b4..e2e51876ee7 100644
--- a/rust/extractor/macros/Cargo.toml
+++ b/rust/extractor/macros/Cargo.toml
@@ -9,5 +9,5 @@ proc-macro = true
 
 # When updating these dependencies, run `rust/update_cargo_deps.sh`
 [dependencies]
-quote = "1.0.40"
+quote = "1.0.41"
 syn = { version = "2.0.106", features = ["full"] }
diff --git a/shared/tree-sitter-extractor/Cargo.toml b/shared/tree-sitter-extractor/Cargo.toml
index 8e60be7274f..d02f02fd588 100644
--- a/shared/tree-sitter-extractor/Cargo.toml
+++ b/shared/tree-sitter-extractor/Cargo.toml
@@ -12,7 +12,7 @@ tree-sitter = ">= 0.23.0"
 tracing = "0.1"
 tracing-subscriber = { version = "0.3.20", features = ["env-filter"] }
 rayon = "1.11.0"
-regex = "1.11.2"
+regex = "1.11.3"
 encoding = "0.2"
 lazy_static = "1.5.0"
 serde = { version = "1.0", features = ["derive"] }