diff --git a/ql/src/queries/summary/NumberOfFilesExtractedWithErrors.ql b/ql/src/queries/summary/NumberOfFilesExtractedWithErrors.ql
index eb871a4086d..92ed5ca6684 100644
--- a/ql/src/queries/summary/NumberOfFilesExtractedWithErrors.ql
+++ b/ql/src/queries/summary/NumberOfFilesExtractedWithErrors.ql
@@ -10,4 +10,6 @@
 import ruby
 import codeql_ruby.Diagnostics
 
-select count(File f | exists(ExtractionError e | e.getLocation().getFile() = f))
+select count(File f |
+    exists(ExtractionError e | e.getLocation().getFile() = f) and exists(f.getRelativePath())
+  )
diff --git a/ql/src/queries/summary/NumberOfSuccessfullyExtractedFiles.ql b/ql/src/queries/summary/NumberOfSuccessfullyExtractedFiles.ql
index 36a584e2271..95049f9ef3c 100644
--- a/ql/src/queries/summary/NumberOfSuccessfullyExtractedFiles.ql
+++ b/ql/src/queries/summary/NumberOfSuccessfullyExtractedFiles.ql
@@ -10,4 +10,6 @@
 import ruby
 import codeql_ruby.Diagnostics
 
-select count(File f | not exists(ExtractionError e | e.getLocation().getFile() = f))
+select count(File f |
+    not exists(ExtractionError e | e.getLocation().getFile() = f) and exists(f.getRelativePath())
+  )